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Transcript Overview
| Name | Vigun08g056200.1 |
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| Unique Name | Vigun08g056200.1_Vu_IT97K-499-35_v1.1 |
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| Type | mRNA |
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| Organism | Vigna unguiculata (cowpea) |
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| Sequence length | 645 |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
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| Vigun08g056200.1 | Vigun08g056200.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
| Vigun08g056200.1_Vu_IT97K-499-35_v1.1 | Vigun08g056200.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun08g056200.1.v1.1.CDS.1 | Vigun08g056200.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | PRINTS | PR01217 | PRICHEXTENSN | coord: 15..31
score: 45.88
coord: 39..51
score: 52.31
coord: 60..81
score: 41.82 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 200..214 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 176..194 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 10..76 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 163..214 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..76 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun08g056200.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g056200.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g056200.1; organism=Vigna unguiculata; type=mRNA; length=645bp
ATGGCTTCAATTCAACCCAACAACTTTTTCTACCCACGTTTCccaccacc
accaccaccaccttcacaattctacaaccctccaccaccaccgtcgcatt
cattttctcctccaccatcaccaccatttagatcaccaccgccgccgcca
ccTCGTCCCATTGGTCCTTCTCCACCGCCACCACCTCGCCCGGTTCGTCC
TCCCCCTGCCCCTCTTCCACCTTCTCCCTCTCCGAGCAACCCCACAGTCA
TAATAGTGGTGGTTGTCTCTGTGGGTGGGCTCTTTCTCCTCTCGATGCTC
GCTTTTGCTCTATTCTGCTGCGTTCAGAGGACCACGAACAAGAAGAAGAC
GCAACAAGAAACCGATGTCGTTCACTTTCATGAACACAAAAGGGTGGAAG
AAACCATCGTACCTGGTCCTTTCGGACGTGACACAGTGGTGGTAACTGTT
GAAGATGACGTGCACATCGATGAAGAAATCAAAAAGAGTGAGAAAGTTGG
TCACCACAATTTGCATGCCAAATCATCTTCTCCACCTGAACCAGATCAAG
GTACTTCTACCAGCATTGTTCAGGTGGCAGCTACTCCTCCTTCTGCACCt
catcatcatgatgatcttcatcaccaGCTTGAAAACAAGCCATGA back to topprotein sequence of Vigun08g056200.1_Vu_IT97K-499-35_v1.1 >Vigun08g056200.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g056200.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g056200.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=215bp
MASIQPNNFFYPRFPPPPPPPSQFYNPPPPPSHSFSPPPSPPFRSPPPPP
PRPIGPSPPPPPRPVRPPPAPLPPSPSPSNPTVIIVVVVSVGGLFLLSML
AFALFCCVQRTTNKKKTQQETDVVHFHEHKRVEETIVPGPFGRDTVVVTV
EDDVHIDEEIKKSEKVGHHNLHAKSSSPPEPDQGTSTSIVQVAATPPSAP
HHHDDLHHQLENKP* back to topmRNA from alignment at Vu08:7010956..7011600- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun08g056200.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g056200.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g056200.1; organism=Vigna unguiculata; type=mRNA; length=645bp; location=Sequence derived from: Vu08:7010956..7011600- (Vigna unguiculata
ATGGCTTCAATTCAACCCAACAACTTTTTCTACCCACGTTTCCCACCACC
ACCACCACCACCTTCACAATTCTACAACCCTCCACCACCACCGTCGCATT
CATTTTCTCCTCCACCATCACCACCATTTAGATCACCACCGCCGCCGCCA
CCTCGTCCCATTGGTCCTTCTCCACCGCCACCACCTCGCCCGGTTCGTCC
TCCCCCTGCCCCTCTTCCACCTTCTCCCTCTCCGAGCAACCCCACAGTCA
TAATAGTGGTGGTTGTCTCTGTGGGTGGGCTCTTTCTCCTCTCGATGCTC
GCTTTTGCTCTATTCTGCTGCGTTCAGAGGACCACGAACAAGAAGAAGAC
GCAACAAGAAACCGATGTCGTTCACTTTCATGAACACAAAAGGGTGGAAG
AAACCATCGTACCTGGTCCTTTCGGACGTGACACAGTGGTGGTAACTGTT
GAAGATGACGTGCACATCGATGAAGAAATCAAAAAGAGTGAGAAAGTTGG
TCACCACAATTTGCATGCCAAATCATCTTCTCCACCTGAACCAGATCAAG
GTACTTCTACCAGCATTGTTCAGGTGGCAGCTACTCCTCCTTCTGCACCT
CATCATCATGATGATCTTCATCACCAGCTTGAAAACAAGCCATGA back to topCoding sequence (CDS) from alignment at Vu08:7010956..7011600- >Vigun08g056200.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g056200.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g056200.1; organism=Vigna unguiculata; type=CDS; length=645bp; location=Sequence derived from: Vu08:7010956..7011600- (Vigna unguiculata
ATGGCTTCAATTCAACCCAACAACTTTTTCTACCCACGTTTCCCACCACC
ACCACCACCACCTTCACAATTCTACAACCCTCCACCACCACCGTCGCATT
CATTTTCTCCTCCACCATCACCACCATTTAGATCACCACCGCCGCCGCCA
CCTCGTCCCATTGGTCCTTCTCCACCGCCACCACCTCGCCCGGTTCGTCC
TCCCCCTGCCCCTCTTCCACCTTCTCCCTCTCCGAGCAACCCCACAGTCA
TAATAGTGGTGGTTGTCTCTGTGGGTGGGCTCTTTCTCCTCTCGATGCTC
GCTTTTGCTCTATTCTGCTGCGTTCAGAGGACCACGAACAAGAAGAAGAC
GCAACAAGAAACCGATGTCGTTCACTTTCATGAACACAAAAGGGTGGAAG
AAACCATCGTACCTGGTCCTTTCGGACGTGACACAGTGGTGGTAACTGTT
GAAGATGACGTGCACATCGATGAAGAAATCAAAAAGAGTGAGAAAGTTGG
TCACCACAATTTGCATGCCAAATCATCTTCTCCACCTGAACCAGATCAAG
GTACTTCTACCAGCATTGTTCAGGTGGCAGCTACTCCTCCTTCTGCACCT
CATCATCATGATGATCTTCATCACCAGCTTGAAAACAAGCCATGA back to top
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