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Transcript Overview
Name | Vigun08g185000.1 |
Unique Name | Vigun08g185000.1_Vu_IT97K-499-35_v1.1 |
Type | mRNA |
Organism | Vigna unguiculata (cowpea) |
Sequence length | 2222 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun08g185000.1 | Vigun08g185000.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
Vigun08g185000.1_Vu_IT97K-499-35_v1.1 | Vigun08g185000.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun08g185000.1.v1.1.five_prime_UTR.2 | Vigun08g185000.1.v1.1.five_prime_UTR.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
Vigun08g185000.1.v1.1.five_prime_UTR.1 | Vigun08g185000.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun08g185000.1.v1.1.CDS.1 | Vigun08g185000.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun08g185000.1.v1.1.three_prime_UTR.1 | Vigun08g185000.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR000008 | C2 domain | SMART | SM00239 | C2_3c | coord: 35..138 e-value: 6.7E-6 score: 35.6 |
IPR000008 | C2 domain | PFAM | PF00168 | C2 | coord: 34..140 e-value: 2.5E-9 score: 37.4 |
IPR035892 | C2 domain superfamily | GENE3D | 2.60.40.150 | | coord: 31..169 e-value: 1.2E-12 score: 50.0 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 408..437 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 325..351 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 314..354 |
None | No IPR available | CDD | cd00030 | C2 | coord: 36..137 e-value: 1.57015E-8 score: 50.1431 |
None | No IPR available | SUPERFAMILY | 49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | coord: 32..162 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun08g185000.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g185000.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g185000.1; organism=Vigna unguiculata; type=mRNA; length=2222bp AAGTTGACCAACACTATTTATGTATTTAAACTCTAGGAGTTGTCTAAAAT GAGAGAAGAAAACACAGACAAGATTTGTGTTGTGTTATTTGATTATGAGA GACAGGGTAATTTATGTTGTCTGAATGGTGAGGGTAGCATGAAGTGAGTG ATAATGAAGATGGTGGGAAGTGGGTCCTGCAACAGCATTAGTGTGAGTGG AGGAAGTTGTGCACTAGAGATATATGGAAGCTGCATTGTCAAGCAAAGCA AACACCAAAAGAAAAGTGGCATCCAAACAAACATGTACATCATAACACTC TTCTCTGTTCATTTCCATGCCTTCATCCTTCAATTTTTTCACCTACTACC ACAATTTCTTTAAACCCCACTTCCATTCAATAAAGCAACCCACTTCATTC ACCTCCAAGTTTCTCTCTTTATCCATGCTTCTTCCTTAATCCATGGACTC ATTTCACAAATGTCTTCAACTACAACAACATTCTTATCTACCTTTCTCTT ACCATTCATTCTTCTAGGTGATCATTGATGATCCAAATATCTGCACCTAC TCTTTTTCTCTTGTGTTTCCTGATTTTGGAAACTTTTTGGAAGAGAAGCT CCAAGGCATAAGAGGGTTGGAATGGATTCATTCAATCAGAATTGTCAGAA TAGCAGCTTCAGATACAGTCCAAATTTGAACACTGGGACACATGCTGATG ATGAAGAAGATGAATTCTCAGGGATTCTTGATATCTTTGTCCATCATGCA AGAAATATTCATAACATATGCATCTATGACAACCAGGATGTGTATGCTAA GTTCTCTCTAACATACAACCCTGATGAGACCCTCTCCACCAGAATCATCA ATGGAGGTGGCAAAAACCCAACATTCAATGAAAACATGAGGATGAACATC ACCCAAATAGACGCTGTTCTGAAATGTGAAATTTGGATGTTTAGCAGGGC AAGGATTCACATGGAAGACCAGTTACTGGGATTTGCTTTGGTCCCAATTT CACAAGTTCTTGGCAAAGGAAAGGTAACTGAAGATTACAGTCTTTCCTCC ACTGATCTTTTCCACTCTCCTGCTGGAACTGTTCAATTGACACTGTCTTT AGACCCTTCTTTGGCGCTGAATTCCTCAGTGAATTTGATACCTGAATCAG CAAAGACTTCATCCATATCATCAGAAGTTATTTTTCTTGATAGAAAGATC TCAGAAGTTATGTTGGACCCAGTTGAGTATGCAAGAATTGAATTTCCTGA CATCAGTGTTGTGAAGGAGAACCAGAAAATGGTGTCTGAGTACTTCAATC TTGCAGCTACTTCAAGGTCCAACAATGGAAGATCACTACCATTTCTCCAC CTTGGTGCATCTCCTCAACTTGATGATCACGAGATGAGTATGAGTCCACC AGATGAGAATCATGTAGGGTCCCTTTCTCCAAACGAGAGCATTCAGAACT CATGCTTCCTAGGCTCCACCATCACAACCTTGAGTGATGACAGAAACTCA GCAGATTCAGTTGAGAAAAAGAACCACTTGAATTCTGTGACCGTGGAAGC TACTCAAAACTGTGGTGGTGCTTGTCCTGATACACCAACTTCTAAGAAAG AAGGTGAGGCCCCAGATGAAAAAGATGCAACCTTTTCGACAAGCAAAGAC AAGGAAAGCAAAATCAGTAGCAAGAACACAACAGAAGCTTCAAAGTTTGG TCAAGTTTTTTCAGCTCCTTTAGGGAACATCAATCTTGAGGCTGAGCAAG CTGCTATGCAGAAACAGATAGTGGACATGTATATGAGAAGCATGCAGCAG TTCACTGAGTCCTTGGCCAAAATGAAGCTCCCGATGGACCTTGACAAGCC TGAGAAAGTTGATCATGGCGATGGTGATGTGATTCAGAATCATGAAAACA GCAAGTTAGAAACTGACAAGAAGAAAAAAGATGGATCTCGTGTGTTTTAT GGTAGTCGAGCATTCTTCTAATCACCTCTTAGTGCTGAAAGTAGCAAGAA TGAGATTGTGAGAAATTAGTTATCGTAACATCAGGTACCTACCTTACCTC AATTTGATCAGTGATATTTGTTAAAGATTTTAGTTTTAGTCCTGGTTTGT TTGACCTCCACTTTAGGTGATCACAATAATCTTCTGTTTTAAATATCTTG TTCATTGATTAACTCATACCTGTGTAACCTCAAAAACACCTTCATCAGTA TGCAAGTTTTCATACCGTAATC back to topprotein sequence of Vigun08g185000.1_Vu_IT97K-499-35_v1.1 >Vigun08g185000.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g185000.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g185000.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=450bp MDSFNQNCQNSSFRYSPNLNTGTHADDEEDEFSGILDIFVHHARNIHNIC IYDNQDVYAKFSLTYNPDETLSTRIINGGGKNPTFNENMRMNITQIDAVL KCEIWMFSRARIHMEDQLLGFALVPISQVLGKGKVTEDYSLSSTDLFHSP AGTVQLTLSLDPSLALNSSVNLIPESAKTSSISSEVIFLDRKISEVMLDP VEYARIEFPDISVVKENQKMVSEYFNLAATSRSNNGRSLPFLHLGASPQL DDHEMSMSPPDENHVGSLSPNESIQNSCFLGSTITTLSDDRNSADSVEKK NHLNSVTVEATQNCGGACPDTPTSKKEGEAPDEKDATFSTSKDKESKISS KNTTEASKFGQVFSAPLGNINLEAEQAAMQKQIVDMYMRSMQQFTESLAK MKLPMDLDKPEKVDHGDGDVIQNHENSKLETDKKKKDGSRVFYGSRAFF* back to topmRNA from alignment at Vu08:35423891..35426221- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun08g185000.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g185000.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g185000.1; organism=Vigna unguiculata; type=mRNA; length=2331bp; location=Sequence derived from: Vu08:35423891..35426221- (Vigna unguiculata AAGTTGACCAACACTATTTATGTATTTAAACTCTAGGAGTTGTCTAAAAT
GAGAGAAGAAAACACAGACAAGATTTGTGTTGTGTTATTTGATTATGAGA
GACAGGGTAATTTATGTTGTCTGAATGGTGAGGGTAGCATGAAGTGAGTG
ATAATGAAGATGGTGGGAAGTGGGTCCTGCAACAGCATTAGTGTGAGTGG
AGGAAGTTGTGCACTAGAGATATATGGAAGCTGCATTGTCAAGCAAAGCA
AACACCAAAAGAAAAGTGGCATCCAAACAAACATGTACATCATAACACTC
TTCTCTGTTCATTTCCATGCCTTCATCCTTCAATTTTTTCACCTACTACC
ACAATTTCTTTAAACCCCACTTCCATTCAATAAAGCAACCCACTTCATTC
ACCTCCAAGTTTCTCTCTTTATCCATGCTTCTTCCTTAATCCATGGACTC
ATTTCACAAATGTCTTCAACTACAACAACATTCTTATCTACCTTTCTCTT
ACCATTCATTCTTCTAGGTGAGTAAAGAAAACCCTCTTCTTCTGCTGCTG
CTGCTGTTTAATCCTTTAAAAACTTCATCTTTTTGCCTACTTTCTTCCAC
TTATTTGTTTTTTATGTATCTGAAAGGTGATCATTGATGATCCAAATATC
TGCACCTACTCTTTTTCTCTTGTGTTTCCTGATTTTGGAAACTTTTTGGA
AGAGAAGCTCCAAGGCATAAGAGGGTTGGAATGGATTCATTCAATCAGAA
TTGTCAGAATAGCAGCTTCAGATACAGTCCAAATTTGAACACTGGGACAC
ATGCTGATGATGAAGAAGATGAATTCTCAGGGATTCTTGATATCTTTGTC
CATCATGCAAGAAATATTCATAACATATGCATCTATGACAACCAGGATGT
GTATGCTAAGTTCTCTCTAACATACAACCCTGATGAGACCCTCTCCACCA
GAATCATCAATGGAGGTGGCAAAAACCCAACATTCAATGAAAACATGAGG
ATGAACATCACCCAAATAGACGCTGTTCTGAAATGTGAAATTTGGATGTT
TAGCAGGGCAAGGATTCACATGGAAGACCAGTTACTGGGATTTGCTTTGG
TCCCAATTTCACAAGTTCTTGGCAAAGGAAAGGTAACTGAAGATTACAGT
CTTTCCTCCACTGATCTTTTCCACTCTCCTGCTGGAACTGTTCAATTGAC
ACTGTCTTTAGACCCTTCTTTGGCGCTGAATTCCTCAGTGAATTTGATAC
CTGAATCAGCAAAGACTTCATCCATATCATCAGAAGTTATTTTTCTTGAT
AGAAAGATCTCAGAAGTTATGTTGGACCCAGTTGAGTATGCAAGAATTGA
ATTTCCTGACATCAGTGTTGTGAAGGAGAACCAGAAAATGGTGTCTGAGT
ACTTCAATCTTGCAGCTACTTCAAGGTCCAACAATGGAAGATCACTACCA
TTTCTCCACCTTGGTGCATCTCCTCAACTTGATGATCACGAGATGAGTAT
GAGTCCACCAGATGAGAATCATGTAGGGTCCCTTTCTCCAAACGAGAGCA
TTCAGAACTCATGCTTCCTAGGCTCCACCATCACAACCTTGAGTGATGAC
AGAAACTCAGCAGATTCAGTTGAGAAAAAGAACCACTTGAATTCTGTGAC
CGTGGAAGCTACTCAAAACTGTGGTGGTGCTTGTCCTGATACACCAACTT
CTAAGAAAGAAGGTGAGGCCCCAGATGAAAAAGATGCAACCTTTTCGACA
AGCAAAGACAAGGAAAGCAAAATCAGTAGCAAGAACACAACAGAAGCTTC
AAAGTTTGGTCAAGTTTTTTCAGCTCCTTTAGGGAACATCAATCTTGAGG
CTGAGCAAGCTGCTATGCAGAAACAGATAGTGGACATGTATATGAGAAGC
ATGCAGCAGTTCACTGAGTCCTTGGCCAAAATGAAGCTCCCGATGGACCT
TGACAAGCCTGAGAAAGTTGATCATGGCGATGGTGATGTGATTCAGAATC
ATGAAAACAGCAAGTTAGAAACTGACAAGAAGAAAAAAGATGGATCTCGT
GTGTTTTATGGTAGTCGAGCATTCTTCTAATCACCTCTTAGTGCTGAAAG
TAGCAAGAATGAGATTGTGAGAAATTAGTTATCGTAACATCAGGTACCTA
CCTTACCTCAATTTGATCAGTGATATTTGTTAAAGATTTTAGTTTTAGTC
CTGGTTTGTTTGACCTCCACTTTAGGTGATCACAATAATCTTCTGTTTTA
AATATCTTGTTCATTGATTAACTCATACCTGTGTAACCTCAAAAACACCT
TCATCAGTATGCAAGTTTTCATACCGTAATC back to topCoding sequence (CDS) from alignment at Vu08:35423891..35426221- >Vigun08g185000.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g185000.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g185000.1; organism=Vigna unguiculata; type=CDS; length=1350bp; location=Sequence derived from: Vu08:35423891..35426221- (Vigna unguiculata ATGGATTCATTCAATCAGAATTGTCAGAATAGCAGCTTCAGATACAGTCC AAATTTGAACACTGGGACACATGCTGATGATGAAGAAGATGAATTCTCAG GGATTCTTGATATCTTTGTCCATCATGCAAGAAATATTCATAACATATGC ATCTATGACAACCAGGATGTGTATGCTAAGTTCTCTCTAACATACAACCC TGATGAGACCCTCTCCACCAGAATCATCAATGGAGGTGGCAAAAACCCAA CATTCAATGAAAACATGAGGATGAACATCACCCAAATAGACGCTGTTCTG AAATGTGAAATTTGGATGTTTAGCAGGGCAAGGATTCACATGGAAGACCA GTTACTGGGATTTGCTTTGGTCCCAATTTCACAAGTTCTTGGCAAAGGAA AGGTAACTGAAGATTACAGTCTTTCCTCCACTGATCTTTTCCACTCTCCT GCTGGAACTGTTCAATTGACACTGTCTTTAGACCCTTCTTTGGCGCTGAA TTCCTCAGTGAATTTGATACCTGAATCAGCAAAGACTTCATCCATATCAT CAGAAGTTATTTTTCTTGATAGAAAGATCTCAGAAGTTATGTTGGACCCA GTTGAGTATGCAAGAATTGAATTTCCTGACATCAGTGTTGTGAAGGAGAA CCAGAAAATGGTGTCTGAGTACTTCAATCTTGCAGCTACTTCAAGGTCCA ACAATGGAAGATCACTACCATTTCTCCACCTTGGTGCATCTCCTCAACTT GATGATCACGAGATGAGTATGAGTCCACCAGATGAGAATCATGTAGGGTC CCTTTCTCCAAACGAGAGCATTCAGAACTCATGCTTCCTAGGCTCCACCA TCACAACCTTGAGTGATGACAGAAACTCAGCAGATTCAGTTGAGAAAAAG AACCACTTGAATTCTGTGACCGTGGAAGCTACTCAAAACTGTGGTGGTGC TTGTCCTGATACACCAACTTCTAAGAAAGAAGGTGAGGCCCCAGATGAAA AAGATGCAACCTTTTCGACAAGCAAAGACAAGGAAAGCAAAATCAGTAGC AAGAACACAACAGAAGCTTCAAAGTTTGGTCAAGTTTTTTCAGCTCCTTT AGGGAACATCAATCTTGAGGCTGAGCAAGCTGCTATGCAGAAACAGATAG TGGACATGTATATGAGAAGCATGCAGCAGTTCACTGAGTCCTTGGCCAAA ATGAAGCTCCCGATGGACCTTGACAAGCCTGAGAAAGTTGATCATGGCGA TGGTGATGTGATTCAGAATCATGAAAACAGCAAGTTAGAAACTGACAAGA AGAAAAAAGATGGATCTCGTGTGTTTTATGGTAGTCGAGCATTCTTCTAA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
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