Vigun08g197500.1

Transcript Overview
NameVigun08g197500.1
Unique NameVigun08g197500.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length1173
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu08supercontigVu08:36313356..36314528 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuL345Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuL165Pisum sativum Cameor genome v1aPisum sativum
psvuL170Pisum sativum Cameor genome v1aPisum sativum
psvuL482Pisum sativum Cameor genome v1aPisum sativum
crvuL191Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL560Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL567Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL701Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL135Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caivuL0195Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivuL0221Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavuL415Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuL0768Cajanus cajan Asha genome v1.0Cajanus cajan
asvuL195Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL689Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR571Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR596Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL088Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL081Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL286Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL267Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL447Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL271Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL384Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR389Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR398Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
carvuL138Cicer arietinum
carvuL386Cicer arietinum
ccavuL423Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL658Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvvaR689Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR736Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL287Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL439Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvfvuL481Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL616Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR445Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR456Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vfaba.Hedin2.R1.1g272760.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
LR48_mrnaVigan07g021000Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Phvul.008G266200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Psat2g013360.1Pisum sativum Cameor genome v1aPisum sativum
XM_058886981.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Cc_v2.0_12537.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-KK1_006015Cajanus cajan Asha genome v1.0Cajanus cajan
PvulFLAVERTChr08.1681Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
jg12367.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Tiffany.R1.1g220560.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-XM_014649499.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
evm.model.Chr08.942Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigst.03G023600.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Psat02G0035900-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun08g197500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun08g197500Vigun08g197500_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g197500.1Vigun08g197500.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun08g197500.1_Vu_IT97K-499-35_v1.1Vigun08g197500.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g197500.1.v1.1.CDS.1Vigun08g197500.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


Homology
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BLAST of Vigun08g197500.1 vs. DB:Swiss
Match: DTWD2_MOUSE (DTW domain-containing protein 2 OS=Mus musculus OX=10090 GN=Dtwd2 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.647e-7
Identity = 37/124 (29.84%), Postives = 68/124 (54.84%), Query Frame = 1 
Query:  802 GSVLLFPSDKAVNISD--LDAIGFEVKNLIVLDGTWAKAKRIYSENPWLNVLPHVKLEVNEASLYSDVRHQPKAGYLSTIESIVFALKAVGENQEGLDGLLDTFESMVGDQ-RRCKEERLSKHF 1164
            G+++L+P  +A N+ +  LD+  +    +I++DGTW++AK I+ +N    +   V+L+ +  S Y  +R QP    LST+E    AL  + +N    + LL   +++   Q +   + RLSK +
Sbjct:  147 GTLILYPGAEATNLEEFILDSPVYP-STIILIDGTWSQAKDIFYKNSLFRLPKQVQLKTSVCSQYV-IRMQPTNRCLSTLECAAVALSILEKNNCIQETLLRPLQALCSFQLQHGAQIRLSKEY 268
[Close]
BLAST of Vigun08g197500.1 vs. DB:Swiss
Match: DTWD2_HUMAN (DTW domain-containing protein 2 OS=Homo sapiens OX=9606 GN=DTWD2 PE=1 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 5.981e-7
Identity = 38/128 (29.69%), Postives = 68/128 (53.12%), Query Frame = 1 
Query:  802 GSVLLFPSDKAVNISD--LDAIGFEVKNLIVLDGTWAKAKRIYSENPWLNVLPHVKLEVNEASLYSDVRHQPKAGYLSTIESIVFALKAVGENQEGLDGLLDTFESMV------GDQRRCKEERLSKH 1161
            G+++L+P  +A N+ +  LD+  +    +I++DGTW++AK I+ +N        V+L+ + +S Y  +R QP    LST+E    AL  + +N    + LL   +++       G Q R  +E L K+
Sbjct:  147 GTLILYPGAEAANLEEFILDSPVYP-STIIIIDGTWSQAKDIFYKNSLFRHPKQVQLKTSISSQYV-IRMQPTNRCLSTLECAAVALSILEKNNYIQETLLRPLQALCSFQLQHGAQIRLSKEHLLKN 272
[Close]
BLAST of Vigun08g197500.1 vs. DB:Swiss
Match: DTWD2_MACFA (DTW domain-containing protein 2 OS=Macaca fascicularis OX=9541 GN=DTWD2 PE=2 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 6.373e-7
Identity = 38/128 (29.69%), Postives = 68/128 (53.12%), Query Frame = 1 
Query:  802 GSVLLFPSDKAVNISD--LDAIGFEVKNLIVLDGTWAKAKRIYSENPWLNVLPHVKLEVNEASLYSDVRHQPKAGYLSTIESIVFALKAVGENQEGLDGLLDTFESMV------GDQRRCKEERLSKH 1161
            G+++L+P  +A N+ +  LD+  +    +I++DGTW++AK I+ +N        V+L+ + +S Y  +R QP    LST+E    AL  + +N    + LL   +++       G Q R  +E L K+
Sbjct:  147 GTLILYPGAEAANLEEFILDSPVYP-STIIIIDGTWSQAKDIFYKNSLFRHPKQVQLKTSISSQYV-IRMQPTNRCLSTLECAAVALSILEKNNYIQETLLRPLQALCSFQLQHGAQIRLSKEHLLKN 272
The following BLAST results are available for this feature:
BLAST of Vigun08g197500.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 3
Match NameE-valueIdentityDescription
DTWD2_MOUSE1.647e-729.84DTW domain-containing protein 2 OS=Mus musculus OX... [more]
DTWD2_HUMAN5.981e-729.69DTW domain-containing protein 2 OS=Homo sapiens OX... [more]
DTWD2_MACFA6.373e-729.69DTW domain-containing protein 2 OS=Macaca fascicul... [more]
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005636DTWSMARTSM01144DTW_2acoord: 9..381
e-value: 3.8E-34
score: 129.4
IPR005636DTWPFAMPF03942DTWcoord: 10..377
e-value: 1.1E-56
score: 191.7

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun08g197500.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g197500.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g197500.1; organism=Vigna unguiculata; type=mRNA; length=1173bp
ATGTCGACAATTCAGGGTAATTCTAAAAGACCCATTTGCCCGTCTTGTTC
CAAACCCACACGAACGTGTCTCTGCTCTCGAATCCTCACACCGTGTCTCC
AAAATTCCGTCCACGTAACCATTCTGCAGCACGCTCTTGAGCGTAAGCAC
CCCCTCAATTCTACCAGAATCGCTAGATTGGGCCTCAAGAATCTCACCGT
TGCAACTGTTTCTGATGTTAATTTCCACGCCCGGTTCCAGATTCGCTTGT
TGGATCCGAATTGCCAAACGGGTCGTGCTGGAAACGTCATGAATGTACTC
CTTTCTCGTCCGTATGGCGAATTTGGAGACACCCAGAAACTGTTTTCTGA
GAAAAGCTCTAACTTGAGCGATGTTGATGATGCCGAAAAATGTGGTTTGA
GAAGTGATCTTGGATGTTTTCTGGATTCTCCCACTCATTTTGAAGTTGGG
ACTCAAGTGAGTTCCACTGATGGTGCACTGGTGAATGATGAAGTTGAGAA
AAATGCTGTCTCTCCAAATTTTGGTTTAACTAGAGGTGTGCATGAACATA
ATGGTAGTCTTGCTATTAATGTTGCCATTGGCAAATATGGTGCCATTAGC
TCTCTGTCTCATATTTGGATAGCACAAGCACAAGCACAATGTGAATCCCC
CAAGTTAAGCTTTGACAATATTTTGGCTTATCCCGAAGCTTCTGAAGCAC
TCTCAGAAGGGTTTTTGGTGAAGAAGTTTCAAAGAAAGCCACCGAACAGG
GATGCAGACTTGGAAGAAGAATGTGAAGAATTTGAGCTGGAGGTTCGTCC
TGGATCAGTGCTACTATTTCCCTCTGATAAGGCTGTGAATATTAGTGACC
TAGATGCTATTGGTTTTGAGGTGAAGAACTTGATTGTTTTGGATGGAACA
TGGGCCAAGGCGAAAAGGATTTACAGTGAAAATCCTTGGTTGAATGTTTT
GCCCCATGTGAAGTTGGAAGTAAATGAGGCGAGCTTATATAGTGATGTGA
GACATCAGCCTAAAGCTGGTTACTTGTCTACCATTGAGAGTATTGTATTT
GCCTTGAAGGCAGTTGGGGAGAATCAAGAGGGTTTGGATGGTCTCTTGGA
TACTTTTGAGTCCATGGTTGGAGACCAGAGACGCTGTAAAGAAGAGAGAC
TGAGCAAACACTTCTCCAGTTGA
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protein sequence of Vigun08g197500.1_Vu_IT97K-499-35_v1.1

>Vigun08g197500.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g197500.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g197500.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=391bp
MSTIQGNSKRPICPSCSKPTRTCLCSRILTPCLQNSVHVTILQHALERKH
PLNSTRIARLGLKNLTVATVSDVNFHARFQIRLLDPNCQTGRAGNVMNVL
LSRPYGEFGDTQKLFSEKSSNLSDVDDAEKCGLRSDLGCFLDSPTHFEVG
TQVSSTDGALVNDEVEKNAVSPNFGLTRGVHEHNGSLAINVAIGKYGAIS
SLSHIWIAQAQAQCESPKLSFDNILAYPEASEALSEGFLVKKFQRKPPNR
DADLEEECEEFELEVRPGSVLLFPSDKAVNISDLDAIGFEVKNLIVLDGT
WAKAKRIYSENPWLNVLPHVKLEVNEASLYSDVRHQPKAGYLSTIESIVF
ALKAVGENQEGLDGLLDTFESMVGDQRRCKEERLSKHFSS*
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mRNA from alignment at Vu08:36313356..36314528+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun08g197500.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g197500.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g197500.1; organism=Vigna unguiculata; type=mRNA; length=1173bp; location=Sequence derived from: Vu08:36313356..36314528+ (Vigna unguiculata
ATGTCGACAATTCAGGGTAATTCTAAAAGACCCATTTGCCCGTCTTGTTC
CAAACCCACACGAACGTGTCTCTGCTCTCGAATCCTCACACCGTGTCTCC
AAAATTCCGTCCACGTAACCATTCTGCAGCACGCTCTTGAGCGTAAGCAC
CCCCTCAATTCTACCAGAATCGCTAGATTGGGCCTCAAGAATCTCACCGT
TGCAACTGTTTCTGATGTTAATTTCCACGCCCGGTTCCAGATTCGCTTGT
TGGATCCGAATTGCCAAACGGGTCGTGCTGGAAACGTCATGAATGTACTC
CTTTCTCGTCCGTATGGCGAATTTGGAGACACCCAGAAACTGTTTTCTGA
GAAAAGCTCTAACTTGAGCGATGTTGATGATGCCGAAAAATGTGGTTTGA
GAAGTGATCTTGGATGTTTTCTGGATTCTCCCACTCATTTTGAAGTTGGG
ACTCAAGTGAGTTCCACTGATGGTGCACTGGTGAATGATGAAGTTGAGAA
AAATGCTGTCTCTCCAAATTTTGGTTTAACTAGAGGTGTGCATGAACATA
ATGGTAGTCTTGCTATTAATGTTGCCATTGGCAAATATGGTGCCATTAGC
TCTCTGTCTCATATTTGGATAGCACAAGCACAAGCACAATGTGAATCCCC
CAAGTTAAGCTTTGACAATATTTTGGCTTATCCCGAAGCTTCTGAAGCAC
TCTCAGAAGGGTTTTTGGTGAAGAAGTTTCAAAGAAAGCCACCGAACAGG
GATGCAGACTTGGAAGAAGAATGTGAAGAATTTGAGCTGGAGGTTCGTCC
TGGATCAGTGCTACTATTTCCCTCTGATAAGGCTGTGAATATTAGTGACC
TAGATGCTATTGGTTTTGAGGTGAAGAACTTGATTGTTTTGGATGGAACA
TGGGCCAAGGCGAAAAGGATTTACAGTGAAAATCCTTGGTTGAATGTTTT
GCCCCATGTGAAGTTGGAAGTAAATGAGGCGAGCTTATATAGTGATGTGA
GACATCAGCCTAAAGCTGGTTACTTGTCTACCATTGAGAGTATTGTATTT
GCCTTGAAGGCAGTTGGGGAGAATCAAGAGGGTTTGGATGGTCTCTTGGA
TACTTTTGAGTCCATGGTTGGAGACCAGAGACGCTGTAAAGAAGAGAGAC
TGAGCAAACACTTCTCCAGTTGA
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Coding sequence (CDS) from alignment at Vu08:36313356..36314528+

>Vigun08g197500.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g197500.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g197500.1; organism=Vigna unguiculata; type=CDS; length=1173bp; location=Sequence derived from: Vu08:36313356..36314528+ (Vigna unguiculata
ATGTCGACAATTCAGGGTAATTCTAAAAGACCCATTTGCCCGTCTTGTTC
CAAACCCACACGAACGTGTCTCTGCTCTCGAATCCTCACACCGTGTCTCC
AAAATTCCGTCCACGTAACCATTCTGCAGCACGCTCTTGAGCGTAAGCAC
CCCCTCAATTCTACCAGAATCGCTAGATTGGGCCTCAAGAATCTCACCGT
TGCAACTGTTTCTGATGTTAATTTCCACGCCCGGTTCCAGATTCGCTTGT
TGGATCCGAATTGCCAAACGGGTCGTGCTGGAAACGTCATGAATGTACTC
CTTTCTCGTCCGTATGGCGAATTTGGAGACACCCAGAAACTGTTTTCTGA
GAAAAGCTCTAACTTGAGCGATGTTGATGATGCCGAAAAATGTGGTTTGA
GAAGTGATCTTGGATGTTTTCTGGATTCTCCCACTCATTTTGAAGTTGGG
ACTCAAGTGAGTTCCACTGATGGTGCACTGGTGAATGATGAAGTTGAGAA
AAATGCTGTCTCTCCAAATTTTGGTTTAACTAGAGGTGTGCATGAACATA
ATGGTAGTCTTGCTATTAATGTTGCCATTGGCAAATATGGTGCCATTAGC
TCTCTGTCTCATATTTGGATAGCACAAGCACAAGCACAATGTGAATCCCC
CAAGTTAAGCTTTGACAATATTTTGGCTTATCCCGAAGCTTCTGAAGCAC
TCTCAGAAGGGTTTTTGGTGAAGAAGTTTCAAAGAAAGCCACCGAACAGG
GATGCAGACTTGGAAGAAGAATGTGAAGAATTTGAGCTGGAGGTTCGTCC
TGGATCAGTGCTACTATTTCCCTCTGATAAGGCTGTGAATATTAGTGACC
TAGATGCTATTGGTTTTGAGGTGAAGAACTTGATTGTTTTGGATGGAACA
TGGGCCAAGGCGAAAAGGATTTACAGTGAAAATCCTTGGTTGAATGTTTT
GCCCCATGTGAAGTTGGAAGTAAATGAGGCGAGCTTATATAGTGATGTGA
GACATCAGCCTAAAGCTGGTTACTTGTCTACCATTGAGAGTATTGTATTT
GCCTTGAAGGCAGTTGGGGAGAATCAAGAGGGTTTGGATGGTCTCTTGGA
TACTTTTGAGTCCATGGTTGGAGACCAGAGACGCTGTAAAGAAGAGAGAC
TGAGCAAACACTTCTCCAGTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR005636DTW