Vigun08g200700.1

Transcript Overview
NameVigun08g200700.1
Unique NameVigun08g200700.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length1341
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu08supercontigVu08:36524812..36526332 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuL345Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuL153Pisum sativum Cameor genome v1aPisum sativum
psvuL170Pisum sativum Cameor genome v1aPisum sativum
crvuL191Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL557Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL701Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL135Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuL0768Cajanus cajan Asha genome v1.0Cajanus cajan
ccvuL0958Cajanus cajan Asha genome v1.0Cajanus cajan
asvuL689Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR560Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR596Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL088Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL081Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL286Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL267Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL447Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL271Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL384Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR389Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR398Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL128Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL120Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL598Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL138Cicer arietinum
carvuL386Cicer arietinum
ccavuL423Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL658Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR678Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR693Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR689Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR736Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL287Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL438Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL301Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL459Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL481Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL616Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR445Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR456Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan07g023900Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Phvul.008G269400.2Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vfaba.Hedin2.R1.1g274920.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vum_03G00237.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigan.03G029300.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-KK1_006052Cajanus cajan Asha genome v1.0Cajanus cajan
rna-XM_014648750.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
jg12415.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Cc_v2.0_12570.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigst.03G020700.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
PvulFLAVERTChr08.1699Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vfaba.Tiffany.R1.1g222640.1Vicia faba cv. Tiffany genome v1.0Vicia faba
evm.model.Chr08.914Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-XM_004491356.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Va07G004100.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun08g200700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun08g200700Vigun08g200700_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g200700.1Vigun08g200700.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun08g200700.1_Vu_IT97K-499-35_v1.1Vigun08g200700.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g200700.1.v1.1.five_prime_UTR.1Vigun08g200700.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g200700.1.v1.1.CDS.1Vigun08g200700.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g200700.1.v1.1.CDS.2Vigun08g200700.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g200700.1.v1.1.three_prime_UTR.1Vigun08g200700.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Vigun08g200700.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun08g200700.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g200700.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g200700.1; organism=Vigna unguiculata; type=mRNA; length=1341bp
GACGTTTCAATGTTTTAAAAGGTTTTAATTTGATTCCAATTTTATTTAAA
ATGAATTTATGTGGTCACGTATGTTAAATTCATGTTTACCGCTGTACTAT
TACATTTAATCTGTGCTCAATACACCCACACTTTAAAGAAAATTTTGTGC
AAGCTGTGTGCCAAACGTGTTATTTGAGTTTGATAGAAGCGGTAAGTTAG
TTAGATTCGAGGATCAATCTTTATGTTTACGGCAATCCTAAATTTTGAAA
GCGGATCATGTTCAAAGGTCTTCAGTTATGAAGGGAAGGTTATAAGGGGT
GTGTTTAGGAAAACATTACTGTTAACATAATCCAAGATTTTTCCAACACA
CCCATATTATGTATACTTGCTTCTTTACTTTTCAATTTCGGTGCCTTGTT
TGCTCTTGTCAAAAGTTATTCTGAACCTCCTTCGATCTTGGAAAGAAAAG
CATGGCATAATTCTTTGCCCAATCTCACAAGTCTCCAGAACTAGCTTATA
ACCACATACTCTCAAAGTCAAAATCAAAACTTCATTTTTTTTTACCTGCT
CTCATCTTAAGTTCACCACACAAATCAAGGTTTAAGCAATTACCCAAAGA
TGATACAACCTTTATTCATGCTTTTGATTACCCAAATGACATTAATCTTA
GTATTATCTTTCGCAAATCCAATTCGAAAATTGGTGGTGAAGGGTCTAGA
CCTTTCGAAGCAGGGAAGGGGCCCCTTGGTCACAAAAACTGTGGCAGCAA
CCATGCTTGTGGTCTTCAGCTCCACCGTGTATACTATAACCGAAATTAAA
AAGCGTTTGAAGGATGCTGGCATAGTTAATCCAACTGATGAGGTTCTCAT
GGCACATCGTCTCTTGGAAGCATTTTTCTTGGGATTCTCTCTATTCCTTG
GATTGGTTATCGACAGACAACATTATTATATCAGAGAGATTAATTTACTG
AGGAGGAGCTTGGAAACAGCGAAAAAACAAAGCCTCAGTCCTGATTCCTC
AAAGAGAAGAGCAGCAGTGCCAGATAAATAGAATGTGAGACAGAGGTTGC
ACATAACCAATGTCCTGAATAGGAAAAATCTGAAAGAGACTATGAACTGT
CTTAAGAAAAAAAAAACTTGAAGATGTTATGTTGCGTGTCCTTGTAGGAG
TGTTCAACACTCAGAATTGAATTGAGTATACGTGTATAATTGTTCTAATT
GTGTCTGTAGTTCATATTAATTATTTATTTCACTTTTATGTAACAATAAT
TACTTAATATAAGCAAAAAGTTCCACATTTGAATATGTGAGTAGTGCTTC
CATGAATGAGAAAAGCATAACGCCAAGCAACAACAAAGGCG
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protein sequence of Vigun08g200700.1_Vu_IT97K-499-35_v1.1

>Vigun08g200700.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g200700.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g200700.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=144bp
MIQPLFMLLITQMTLILVLSFANPIRKLVVKGLDLSKQGRGPLVTKTVAA
TMLVVFSSTVYTITEIKKRLKDAGIVNPTDEVLMAHRLLEAFFLGFSLFL
GLVIDRQHYYIREINLLRRSLETAKKQSLSPDSSKRRAAVPDK*
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mRNA from alignment at Vu08:36524812..36526332+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun08g200700.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g200700.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g200700.1; organism=Vigna unguiculata; type=mRNA; length=1521bp; location=Sequence derived from: Vu08:36524812..36526332+ (Vigna unguiculata
GACGTTTCAATGTTTTAAAAGGTTTTAATTTGATTCCAATTTTATTTAAA
ATGAATTTATGTGGTCACGTATGTTAAATTCATGTTTACCGCTGTACTAT
TACATTTAATCTGTGCTCAATACACCCACACTTTAAAGAAAATTTTGTGC
AAGCTGTGTGCCAAACGTGTTATTTGAGTTTGATAGAAGCGGTAAGTTAG
TTAGATTCGAGGATCAATCTTTATGTTTACGGCAATCCTAAATTTTGAAA
GCGGATCATGTTCAAAGGTCTTCAGTTATGAAGGGAAGGTTATAAGGGGT
GTGTTTAGGAAAACATTACTGTTAACATAATCCAAGATTTTTCCAACACA
CCCATATTATGTATACTTGCTTCTTTACTTTTCAATTTCGGTGCCTTGTT
TGCTCTTGTCAAAAGTTATTCTGAACCTCCTTCGATCTTGGAAAGAAAAG
CATGGCATAATTCTTTGCCCAATCTCACAAGTCTCCAGAACTAGCTTATA
ACCACATACTCTCAAAGTCAAAATCAAAACTTCATTTTTTTTTACCTGCT
CTCATCTTAAGTTCACCACACAAATCAAGGTTTAAGCAATTACCCAAAGA
TGATACAACCTTTATTCATGCTTTTGATTACCCAAATGACATTAATCTTA
GTATTATCTTTCGCAAATCCAATTCGAAAATTGGTGGTGAAGGGTCTAGA
CCTTTCGAAGCAGGGAAGGGGCCCCTTGGTCACAAAAACTGTGGCAGCAA
CCATGCTTGTGGTCTTCAGCTCCACCGTGTATACTATAACCGAAATTAAA
AAGCGTTTGAAGGATGCTGGCATAGTTAATCCAACTGATGAGGTTCTCAT
GGCACATCGTCTCTTGGAAGCATTTTTCTTGGGTAATTACTCCAAAAATT
ATTTTCTTATTTGCTTACAATACCTGTTTTACTATTTTTGTTGCACTCAA
TAACTATGATTTGTTTAGTATCAACGAACATAGATTTTCCTTTTGCCATT
TCTTCTGGCATATCATGTGCAGAACATGTAAATTTAAACCCTATTTGATG
ATTATTGGGCAGGATTCTCTCTATTCCTTGGATTGGTTATCGACAGACAA
CATTATTATATCAGAGAGATTAATTTACTGAGGAGGAGCTTGGAAACAGC
GAAAAAACAAAGCCTCAGTCCTGATTCCTCAAAGAGAAGAGCAGCAGTGC
CAGATAAATAGAATGTGAGACAGAGGTTGCACATAACCAATGTCCTGAAT
AGGAAAAATCTGAAAGAGACTATGAACTGTCTTAAGAAAAAAAAAACTTG
AAGATGTTATGTTGCGTGTCCTTGTAGGAGTGTTCAACACTCAGAATTGA
ATTGAGTATACGTGTATAATTGTTCTAATTGTGTCTGTAGTTCATATTAA
TTATTTATTTCACTTTTATGTAACAATAATTACTTAATATAAGCAAAAAG
TTCCACATTTGAATATGTGAGTAGTGCTTCCATGAATGAGAAAAGCATAA
CGCCAAGCAACAACAAAGGCG
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Coding sequence (CDS) from alignment at Vu08:36524812..36526332+

>Vigun08g200700.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g200700.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g200700.1; organism=Vigna unguiculata; type=CDS; length=432bp; location=Sequence derived from: Vu08:36524812..36526332+ (Vigna unguiculata
ATGATACAACCTTTATTCATGCTTTTGATTACCCAAATGACATTAATCTT
AGTATTATCTTTCGCAAATCCAATTCGAAAATTGGTGGTGAAGGGTCTAG
ACCTTTCGAAGCAGGGAAGGGGCCCCTTGGTCACAAAAACTGTGGCAGCA
ACCATGCTTGTGGTCTTCAGCTCCACCGTGTATACTATAACCGAAATTAA
AAAGCGTTTGAAGGATGCTGGCATAGTTAATCCAACTGATGAGGTTCTCA
TGGCACATCGTCTCTTGGAAGCATTTTTCTTGGGATTCTCTCTATTCCTT
GGATTGGTTATCGACAGACAACATTATTATATCAGAGAGATTAATTTACT
GAGGAGGAGCTTGGAAACAGCGAAAAAACAAAGCCTCAGTCCTGATTCCT
CAAAGAGAAGAGCAGCAGTGCCAGATAAATAG
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