Vigun08g210600.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun08g210600.1 vs. DB:Swiss
Match: RSMB_SYNY3 (Probable ribosomal RNA small subunit methyltransferase B OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rsmB PE=3 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 1.539e-55 Identity = 148/422 (35.07%), Postives = 212/422 (50.24%), Query Frame = 1 Query: 334 LSHHDLRLVTDIVGGTIRWRRYLDHLINSLCHDKDISSMEPLLLQILRIGFYEVVKLD-MPPYAVVDENVELAKVALRPGAGNMVNGILRKLVVLKENGTLPLPKVEGDDRAQARALATLHSHPVWMVRRWTKYLGQEEAIKLMIWNNSEPSFSLRANRASGFSRDDLVAQLNELKVPHKLSLYLDEFVRIKTGLQIVIHAGLLKKGLCSVQDESAGLVISVVDPQPGETIVDGCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRTLTDNGQLKS----DKVLLDAPCSGLGVLSKRADLRWNRXXXXXXXXXXXXXXXXXAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFRIDHVDRFVPPDFVTS--SGFFFSNPVKHSLDGSFAARL 1578 LS D R T++V G +R +R LD LI L D+ I P L +I+++G Y++ LD +P A V+ V+LAK G +VNG+LR+ +E G L + + +L +S P W++ + + G+ E L + N PS LR N SR ++ L EL + L + +R+ + +G +VQD SA V +++PQP ETI D CAAPGGKT ++A + QG+++A D + RL+ L T Q G +T+I LT G D+ LLD PCSGLG L + DLRW + + L LQ LL A + LVK GG LVYSTC+++P EN+ ++ FL H D+R + + P S SG P H DG F A L Sbjct: 35 LSPPDRRFCTELVYGVVRRQRTLDCLIEQL-GDRPIGKQPPDLRRIVQLGLYQLRYLDQVPASAAVNTGVDLAKANGLKGLSKVVNGMLRRYQRAEEQGKNILDQ-------EKISLGEQYSFPDWLMELFEQTWGKAETESLCAYFNQNPSLDLRINPLK-TSRVEVAQSLAELNLTTTAMAGLPQGLRLGGKTGAITQLPGFAEGWWTVQDASAQWVAQILNPQPEETIFDVCAAPGGKTTHIAELMGDQGQIYAGDRHGWRLQKLAVT---QQRLG-LTSIKIWEGDLTQPGVKPPVELVDRALLDVPCSGLGTLHRNPDLRWRQTPATIATLLPLQQALLKAIAPLVKSGGTLVYSTCTLNPAENEAQIERFLQDHEDWRSEPFEWTSPQGQTNSVTSGMLTILPHHHHQDGFFIANL 443
BLAST of Vigun08g210600.1 vs. DB:Swiss
Match: RSMB_BACSU (Probable ribosomal RNA small subunit methyltransferase B OS=Bacillus subtilis (strain 168) OX=224308 GN=rsmB PE=3 SV=2) HSP 1 Score: 195.667 bits (496), Expect = 2.127e-55 Identity = 131/428 (30.61%), Postives = 230/428 (53.74%), Query Frame = 1 Query: 319 FRTRELSHHDLRLVTDIVGGTIRWRRYLDHLINSLCHDKDISSMEPLLLQILRIGFYEVVKLD-MPPYAVVDENVELAKVALRPGAGNMVNGILRKLVVLKENGTLPLPKVEGDDRAQARALATLHSHPVWMVRRWTKYLGQEEAIKLMIWNNSEPSFSLRANRASGFSRDDLVAQLNELKVPHKLSLYLDEFVRIKTGLQIVIHAGLLKKGLCSVQDESAGLVISVVDPQPGETIVDGCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGV-ITAIHADLRTLTDNGQL----KSDKVLLDAPCSGLGVLSKRADLRWNRXXXXXXXXXXXXXXXXXAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFRID-HVDRFVP---------------PDFVTSSGFFFSN 1536 ++ ELS + L+T++V GT++ + LD+++ + ++P ++Q+LR+ Y++ L+ +P A + E VE+AK+ G + VNG+LR + + G +E R LAT SHP W+V+ W G E A K+ + P +LR N+ R +L+ Q+ + + ++ V++ G H + G S+QDES+ LV +DP+ ET++D CAAPGGK+ ++A + +G V ++D++ +++++KE A D + +T IHA+ G+ + D++L+DAPCSG GV+ ++ D+++ +K +D L ++Q +L + LVK GG LVYSTC++D END+ + AF+ HPDF D +++ +P P + + GFF + Sbjct: 32 IKSNELSDQNRGLLTELVYGTLQNKIALDYMLKPFINKP--QKVKPWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI---QREGVPSFDAIED----PVRRLATETSHPEWLVKEWADAYGFEAAEKICRIHLIPPKQTLRVNQMKA-DRAELLDQMAAEGIEVEKGDLAEDAVKLLKGTIAGTH--FFQNGEVSIQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKEAA-----DRLGLTIIHAETMDARKAGETFENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSARLAEIQLSILREIAPLVKKGGTLVYSTCTMDRTENDEVIHAFIQEHPDFEPDLSLEKRLPEKVRPFVRDGRLQILPHYFGTDGFFICS 442
BLAST of Vigun08g210600.1 vs. DB:Swiss
Match: RSMB_YERPG (Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis bv. Antiqua (strain Angola) OX=349746 GN=rsmB PE=3 SV=2) HSP 1 Score: 170.244 bits (430), Expect = 5.057e-46 Identity = 136/417 (32.61%), Postives = 214/417 (51.32%), Query Frame = 1 Query: 328 RELSHHDLRLVTDIVGGTIRWRRYLDHLINSLCHDKDISSMEPLLLQILRIGFYEVVKLDMPPYAVVDENVELAKVALRPGAGNMVNGILRKLVVLKENGTLPLPKVEGDDRAQARALATLHSHPVWMVRRWTK-YLGQEEAIKLMIWNNSEPSFSLRANRASGFSRDDLVAQLNELKV---PHKLSLYLDEFVRIKTGLQIVIHAGLLKKGLCSVQDESAGLVISVVDPQPGETIVDGCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRTL-TDNGQLKSDKVLLDAPCSGLGVLSKRADLRWNRXXXXXXXXXXXXXXXXXAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFRIDHVDRFVPPDFVT------SSGFFFSNPVK 1545 + +S D L+ ++ GT+R L+ I L + ++ + + ++ +G Y+++ +PP+A + E VE A V RP ++NG+LR+ ++ L V D + HP W++ R + Y Q + I + NN P LR NR SR + + L + + PH +Y D VR+ T V H + G +VQD SA + ++DPQ GE I+D CAAPGGKT ++ + + V AVD++ RL +KE + Q+ V+ D R T G + D++LLDAPCS GV+ + D++W R+ D+ EL +LQ E+++A +K GGVLVY+TCSI PEEN ++AAFL RHP+ ++ P GFF++ +K Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM-ARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQLKGLINGVLRQFQ--RQQVELLERAVNNDSH---------YLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVNR-QHHSRSEYLELLTQADINAEPH--PIYRDA-VRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
BLAST of Vigun08g210600.1 vs. DB:Swiss
Match: RSMB_YERPY (Ribosomal RNA small subunit methyltransferase B OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) OX=502800 GN=rsmB PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 7.925e-46 Identity = 136/417 (32.61%), Postives = 214/417 (51.32%), Query Frame = 1 Query: 328 RELSHHDLRLVTDIVGGTIRWRRYLDHLINSLCHDKDISSMEPLLLQILRIGFYEVVKLDMPPYAVVDENVELAKVALRPGAGNMVNGILRKLVVLKENGTLPLPKVEGDDRAQARALATLHSHPVWMVRRWTK-YLGQEEAIKLMIWNNSEPSFSLRANRASGFSRDDLVAQLNELKV---PHKLSLYLDEFVRIKTGLQIVIHAGLLKKGLCSVQDESAGLVISVVDPQPGETIVDGCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRTL-TDNGQLKSDKVLLDAPCSGLGVLSKRADLRWNRXXXXXXXXXXXXXXXXXAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFRIDHVDRFVPPDFVT------SSGFFFSNPVK 1545 + +S D L+ ++ GT+R L+ I L + ++ + + ++ +G Y+++ +PP+A + E VE A V RP ++NG+LR+ ++ L V D + HP W++ R + Y Q + I + NN P LR NR SR + + L + + PH +Y D VR+ T V H + G +VQD SA + ++DPQ GE I+D CAAPGGKT ++ + + V AVD++ RL +KE + Q+ V+ D R T G + D++LLDAPCS GV+ + D++W R+ D+ EL +LQ E+++A +K GGVLVY+TCSI PEEN ++AAFL RHP+ ++ P GFF++ +K Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM-ARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQLKGLINGVLRQFQ--RQQVELLERAVNNDSH---------YLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVNRLH-HSRSEYLELLTQADINAEPH--PIYRDA-VRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
BLAST of Vigun08g210600.1 vs. DB:Swiss
Match: RSMB_YERPS (Ribosomal RNA small subunit methyltransferase B OS=Yersinia pseudotuberculosis serotype I (strain IP32953) OX=273123 GN=rsmB PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 7.925e-46 Identity = 136/417 (32.61%), Postives = 214/417 (51.32%), Query Frame = 1 Query: 328 RELSHHDLRLVTDIVGGTIRWRRYLDHLINSLCHDKDISSMEPLLLQILRIGFYEVVKLDMPPYAVVDENVELAKVALRPGAGNMVNGILRKLVVLKENGTLPLPKVEGDDRAQARALATLHSHPVWMVRRWTK-YLGQEEAIKLMIWNNSEPSFSLRANRASGFSRDDLVAQLNELKV---PHKLSLYLDEFVRIKTGLQIVIHAGLLKKGLCSVQDESAGLVISVVDPQPGETIVDGCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRTL-TDNGQLKSDKVLLDAPCSGLGVLSKRADLRWNRXXXXXXXXXXXXXXXXXAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFRIDHVDRFVPPDFVT------SSGFFFSNPVK 1545 + +S D L+ ++ GT+R L+ I L + ++ + + ++ +G Y+++ +PP+A + E VE A V RP ++NG+LR+ ++ L V D + HP W++ R + Y Q + I + NN P LR NR SR + + L + + PH +Y D VR+ T V H + G +VQD SA + ++DPQ GE I+D CAAPGGKT ++ + + V AVD++ RL +KE + Q+ V+ D R T G + D++LLDAPCS GV+ + D++W R+ D+ EL +LQ E+++A +K GGVLVY+TCSI PEEN ++AAFL RHP+ ++ P GFF++ +K Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM-ARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQLKGLINGVLRQFQ--RQQVELLERAVNNDSH---------YLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVNRLH-HSRSEYLELLTQADINAEPH--PIYRDA-VRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
BLAST of Vigun08g210600.1 vs. DB:Swiss
Match: RSMB_YERPP (Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis (strain Pestoides F) OX=386656 GN=rsmB PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 7.925e-46 Identity = 136/417 (32.61%), Postives = 214/417 (51.32%), Query Frame = 1 Query: 328 RELSHHDLRLVTDIVGGTIRWRRYLDHLINSLCHDKDISSMEPLLLQILRIGFYEVVKLDMPPYAVVDENVELAKVALRPGAGNMVNGILRKLVVLKENGTLPLPKVEGDDRAQARALATLHSHPVWMVRRWTK-YLGQEEAIKLMIWNNSEPSFSLRANRASGFSRDDLVAQLNELKV---PHKLSLYLDEFVRIKTGLQIVIHAGLLKKGLCSVQDESAGLVISVVDPQPGETIVDGCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRTL-TDNGQLKSDKVLLDAPCSGLGVLSKRADLRWNRXXXXXXXXXXXXXXXXXAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFRIDHVDRFVPPDFVT------SSGFFFSNPVK 1545 + +S D L+ ++ GT+R L+ I L + ++ + + ++ +G Y+++ +PP+A + E VE A V RP ++NG+LR+ ++ L V D + HP W++ R + Y Q + I + NN P LR NR SR + + L + + PH +Y D VR+ T V H + G +VQD SA + ++DPQ GE I+D CAAPGGKT ++ + + V AVD++ RL +KE + Q+ V+ D R T G + D++LLDAPCS GV+ + D++W R+ D+ EL +LQ E+++A +K GGVLVY+TCSI PEEN ++AAFL RHP+ ++ P GFF++ +K Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM-ARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQLKGLINGVLRQFQ--RQQVELLERAVNNDSH---------YLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVNRLH-HSRSEYLELLTQADINAEPH--PIYRDA-VRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
BLAST of Vigun08g210600.1 vs. DB:Swiss
Match: RSMB_YERPN (Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis bv. Antiqua (strain Nepal516) OX=377628 GN=rsmB PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 7.925e-46 Identity = 136/417 (32.61%), Postives = 214/417 (51.32%), Query Frame = 1 Query: 328 RELSHHDLRLVTDIVGGTIRWRRYLDHLINSLCHDKDISSMEPLLLQILRIGFYEVVKLDMPPYAVVDENVELAKVALRPGAGNMVNGILRKLVVLKENGTLPLPKVEGDDRAQARALATLHSHPVWMVRRWTK-YLGQEEAIKLMIWNNSEPSFSLRANRASGFSRDDLVAQLNELKV---PHKLSLYLDEFVRIKTGLQIVIHAGLLKKGLCSVQDESAGLVISVVDPQPGETIVDGCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRTL-TDNGQLKSDKVLLDAPCSGLGVLSKRADLRWNRXXXXXXXXXXXXXXXXXAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFRIDHVDRFVPPDFVT------SSGFFFSNPVK 1545 + +S D L+ ++ GT+R L+ I L + ++ + + ++ +G Y+++ +PP+A + E VE A V RP ++NG+LR+ ++ L V D + HP W++ R + Y Q + I + NN P LR NR SR + + L + + PH +Y D VR+ T V H + G +VQD SA + ++DPQ GE I+D CAAPGGKT ++ + + V AVD++ RL +KE + Q+ V+ D R T G + D++LLDAPCS GV+ + D++W R+ D+ EL +LQ E+++A +K GGVLVY+TCSI PEEN ++AAFL RHP+ ++ P GFF++ +K Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM-ARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQLKGLINGVLRQFQ--RQQVELLERAVNNDSH---------YLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVNRLH-HSRSEYLELLTQADINAEPH--PIYRDA-VRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
BLAST of Vigun08g210600.1 vs. DB:Swiss
Match: RSMB_YERPE (Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis OX=632 GN=rsmB PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 7.925e-46 Identity = 136/417 (32.61%), Postives = 214/417 (51.32%), Query Frame = 1 Query: 328 RELSHHDLRLVTDIVGGTIRWRRYLDHLINSLCHDKDISSMEPLLLQILRIGFYEVVKLDMPPYAVVDENVELAKVALRPGAGNMVNGILRKLVVLKENGTLPLPKVEGDDRAQARALATLHSHPVWMVRRWTK-YLGQEEAIKLMIWNNSEPSFSLRANRASGFSRDDLVAQLNELKV---PHKLSLYLDEFVRIKTGLQIVIHAGLLKKGLCSVQDESAGLVISVVDPQPGETIVDGCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRTL-TDNGQLKSDKVLLDAPCSGLGVLSKRADLRWNRXXXXXXXXXXXXXXXXXAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFRIDHVDRFVPPDFVT------SSGFFFSNPVK 1545 + +S D L+ ++ GT+R L+ I L + ++ + + ++ +G Y+++ +PP+A + E VE A V RP ++NG+LR+ ++ L V D + HP W++ R + Y Q + I + NN P LR NR SR + + L + + PH +Y D VR+ T V H + G +VQD SA + ++DPQ GE I+D CAAPGGKT ++ + + V AVD++ RL +KE + Q+ V+ D R T G + D++LLDAPCS GV+ + D++W R+ D+ EL +LQ E+++A +K GGVLVY+TCSI PEEN ++AAFL RHP+ ++ P GFF++ +K Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM-ARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQLKGLINGVLRQFQ--RQQVELLERAVNNDSH---------YLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVNRLH-HSRSEYLELLTQADINAEPH--PIYRDA-VRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
BLAST of Vigun08g210600.1 vs. DB:Swiss
Match: RSMB_YERPB (Ribosomal RNA small subunit methyltransferase B OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) OX=502801 GN=rsmB PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 7.925e-46 Identity = 136/417 (32.61%), Postives = 214/417 (51.32%), Query Frame = 1 Query: 328 RELSHHDLRLVTDIVGGTIRWRRYLDHLINSLCHDKDISSMEPLLLQILRIGFYEVVKLDMPPYAVVDENVELAKVALRPGAGNMVNGILRKLVVLKENGTLPLPKVEGDDRAQARALATLHSHPVWMVRRWTK-YLGQEEAIKLMIWNNSEPSFSLRANRASGFSRDDLVAQLNELKV---PHKLSLYLDEFVRIKTGLQIVIHAGLLKKGLCSVQDESAGLVISVVDPQPGETIVDGCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRTL-TDNGQLKSDKVLLDAPCSGLGVLSKRADLRWNRXXXXXXXXXXXXXXXXXAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFRIDHVDRFVPPDFVT------SSGFFFSNPVK 1545 + +S D L+ ++ GT+R L+ I L + ++ + + ++ +G Y+++ +PP+A + E VE A V RP ++NG+LR+ ++ L V D + HP W++ R + Y Q + I + NN P LR NR SR + + L + + PH +Y D VR+ T V H + G +VQD SA + ++DPQ GE I+D CAAPGGKT ++ + + V AVD++ RL +KE + Q+ V+ D R T G + D++LLDAPCS GV+ + D++W R+ D+ EL +LQ E+++A +K GGVLVY+TCSI PEEN ++AAFL RHP+ ++ P GFF++ +K Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM-ARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQLKGLINGVLRQFQ--RQQVELLERAVNNDSH---------YLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVNRLH-HSRSEYLELLTQADINAEPH--PIYRDA-VRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
BLAST of Vigun08g210600.1 vs. DB:Swiss
Match: RSMB_YERPA (Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis bv. Antiqua (strain Antiqua) OX=360102 GN=rsmB PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 7.925e-46 Identity = 136/417 (32.61%), Postives = 214/417 (51.32%), Query Frame = 1 Query: 328 RELSHHDLRLVTDIVGGTIRWRRYLDHLINSLCHDKDISSMEPLLLQILRIGFYEVVKLDMPPYAVVDENVELAKVALRPGAGNMVNGILRKLVVLKENGTLPLPKVEGDDRAQARALATLHSHPVWMVRRWTK-YLGQEEAIKLMIWNNSEPSFSLRANRASGFSRDDLVAQLNELKV---PHKLSLYLDEFVRIKTGLQIVIHAGLLKKGLCSVQDESAGLVISVVDPQPGETIVDGCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRTL-TDNGQLKSDKVLLDAPCSGLGVLSKRADLRWNRXXXXXXXXXXXXXXXXXAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFRIDHVDRFVPPDFVT------SSGFFFSNPVK 1545 + +S D L+ ++ GT+R L+ I L + ++ + + ++ +G Y+++ +PP+A + E VE A V RP ++NG+LR+ ++ L V D + HP W++ R + Y Q + I + NN P LR NR SR + + L + + PH +Y D VR+ T V H + G +VQD SA + ++DPQ GE I+D CAAPGGKT ++ + + V AVD++ RL +KE + Q+ V+ D R T G + D++LLDAPCS GV+ + D++W R+ D+ EL +LQ E+++A +K GGVLVY+TCSI PEEN ++AAFL RHP+ ++ P GFF++ +K Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM-ARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQLKGLINGVLRQFQ--RQQVELLERAVNNDSH---------YLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVNRLH-HSRSEYLELLTQADINAEPH--PIYRDA-VRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428 The following BLAST results are available for this feature:
BLAST of Vigun08g210600.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun08g210600.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g210600.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g210600.1; organism=Vigna unguiculata; type=mRNA; length=2610bpback to top protein sequence of Vigun08g210600.1_Vu_IT97K-499-35_v1.1 >Vigun08g210600.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g210600.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g210600.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=531bpback to top mRNA from alignment at Vu08:37243333..37250852- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun08g210600.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g210600.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g210600.1; organism=Vigna unguiculata; type=mRNA; length=7520bp; location=Sequence derived from: Vu08:37243333..37250852- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu08:37243333..37250852- >Vigun08g210600.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g210600.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g210600.1; organism=Vigna unguiculata; type=CDS; length=1593bp; location=Sequence derived from: Vu08:37243333..37250852- (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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