Vigun08g210600.1

Transcript Overview
NameVigun08g210600.1
Unique NameVigun08g210600.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length2610
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu08supercontigVu08:37243333..37250852 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuL271Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvuL346Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuL166Pisum sativum Cameor genome v1aPisum sativum
crvuL191Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL557Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL701Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL135Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caivuL0194Cicer arietinum ICC 4958 genome v2Cicer arietinum
ccvuL0770Cajanus cajan Asha genome v1.0Cajanus cajan
ccvuL0814Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0195Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0636Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1011Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1203Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL071Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL199Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL706Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR570Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR596Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL088Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL081Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL286Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL267Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL081Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL447Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL383Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL825Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL828Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR389Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR398Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL128Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL120Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL598Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL138Cicer arietinum
carvuL386Cicer arietinum
ccavuL163Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL423Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL658Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR678Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR693Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR689Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR736Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL287Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL435Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL438Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL301Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL459Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL481Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL616Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR447Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR456Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
rna-TanjilR_29692Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Cc_v2.0_12650.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
LR48_mrnaVigan07g011300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Psat02G0018200-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigan.03G017900.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-XM_014649778.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Ca_03132.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Psat2g007080.1Pisum sativum Cameor genome v1aPisum sativum
Vum_03G00144.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Phvul.008G279400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-KK1_006104Cajanus cajan Asha genome v1.0Cajanus cajan
Va07G002470.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
jg233.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Cr_03260.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vfaba.Hedin2.R1.1g281240.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigst.03G012500.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Ca_09728Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
XM_058889025.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
rna-XM_014663666.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
PvulFLAVERTChr08.1001781Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vfaba.Tiffany.R1.1g227440.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-XM_004491461.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
evm.model.Chr08.829.1.62113171Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun08g210600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun08g210600Vigun08g210600_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g210600.1Vigun08g210600.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun08g210600.1_Vu_IT97K-499-35_v1.1Vigun08g210600.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g210600.1.v1.1.CDS.17Vigun08g210600.1.v1.1.CDS.17_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g210600.1.v1.1.CDS.16Vigun08g210600.1.v1.1.CDS.16_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g210600.1.v1.1.CDS.15Vigun08g210600.1.v1.1.CDS.15_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g210600.1.v1.1.CDS.14Vigun08g210600.1.v1.1.CDS.14_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g210600.1.v1.1.CDS.13Vigun08g210600.1.v1.1.CDS.13_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g210600.1.v1.1.CDS.12Vigun08g210600.1.v1.1.CDS.12_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g210600.1.v1.1.CDS.11Vigun08g210600.1.v1.1.CDS.11_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g210600.1.v1.1.CDS.10Vigun08g210600.1.v1.1.CDS.10_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g210600.1.v1.1.CDS.9Vigun08g210600.1.v1.1.CDS.9_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g210600.1.v1.1.CDS.8Vigun08g210600.1.v1.1.CDS.8_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g210600.1.v1.1.CDS.7Vigun08g210600.1.v1.1.CDS.7_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g210600.1.v1.1.CDS.6Vigun08g210600.1.v1.1.CDS.6_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g210600.1.v1.1.CDS.5Vigun08g210600.1.v1.1.CDS.5_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g210600.1.v1.1.CDS.4Vigun08g210600.1.v1.1.CDS.4_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g210600.1.v1.1.CDS.3Vigun08g210600.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g210600.1.v1.1.CDS.2Vigun08g210600.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g210600.1.v1.1.CDS.1Vigun08g210600.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g210600.1.v1.1.three_prime_UTR.1Vigun08g210600.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g210600.1.v1.1.five_prime_UTR.1Vigun08g210600.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


Homology
[Close]
BLAST of Vigun08g210600.1 vs. DB:Swiss
Match: RSMB_SYNY3 (Probable ribosomal RNA small subunit methyltransferase B OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rsmB PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.539e-55
Identity = 148/422 (35.07%), Postives = 212/422 (50.24%), Query Frame = 1 
Query:  334 LSHHDLRLVTDIVGGTIRWRRYLDHLINSLCHDKDISSMEPLLLQILRIGFYEVVKLD-MPPYAVVDENVELAKVALRPGAGNMVNGILRKLVVLKENGTLPLPKVEGDDRAQARALATLHSHPVWMVRRWTKYLGQEEAIKLMIWNNSEPSFSLRANRASGFSRDDLVAQLNELKVPHKLSLYLDEFVRIKTGLQIVIHAGLLKKGLCSVQDESAGLVISVVDPQPGETIVDGCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRTLTDNGQLKS----DKVLLDAPCSGLGVLSKRADLRWNRXXXXXXXXXXXXXXXXXAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFRIDHVDRFVPPDFVTS--SGFFFSNPVKHSLDGSFAARL 1578
            LS  D R  T++V G +R +R LD LI  L  D+ I    P L +I+++G Y++  LD +P  A V+  V+LAK     G   +VNG+LR+    +E G   L +       +  +L   +S P W++  + +  G+ E   L  + N  PS  LR N     SR ++   L EL +       L + +R+      +       +G  +VQD SA  V  +++PQP ETI D CAAPGGKT ++A  +  QG+++A D +  RL+ L  T    Q  G +T+I      LT  G        D+ LLD PCSGLG L +  DLRW +    +  L  LQ  LL A + LVK GG LVYSTC+++P EN+ ++  FL  H D+R +  +   P     S  SG     P  H  DG F A L
Sbjct:   35 LSPPDRRFCTELVYGVVRRQRTLDCLIEQL-GDRPIGKQPPDLRRIVQLGLYQLRYLDQVPASAAVNTGVDLAKANGLKGLSKVVNGMLRRYQRAEEQGKNILDQ-------EKISLGEQYSFPDWLMELFEQTWGKAETESLCAYFNQNPSLDLRINPLK-TSRVEVAQSLAELNLTTTAMAGLPQGLRLGGKTGAITQLPGFAEGWWTVQDASAQWVAQILNPQPEETIFDVCAAPGGKTTHIAELMGDQGQIYAGDRHGWRLQKLAVT---QQRLG-LTSIKIWEGDLTQPGVKPPVELVDRALLDVPCSGLGTLHRNPDLRWRQTPATIATLLPLQQALLKAIAPLVKSGGTLVYSTCTLNPAENEAQIERFLQDHEDWRSEPFEWTSPQGQTNSVTSGMLTILPHHHHQDGFFIANL 443
[Close]
BLAST of Vigun08g210600.1 vs. DB:Swiss
Match: RSMB_BACSU (Probable ribosomal RNA small subunit methyltransferase B OS=Bacillus subtilis (strain 168) OX=224308 GN=rsmB PE=3 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.127e-55
Identity = 131/428 (30.61%), Postives = 230/428 (53.74%), Query Frame = 1 
Query:  319 FRTRELSHHDLRLVTDIVGGTIRWRRYLDHLINSLCHDKDISSMEPLLLQILRIGFYEVVKLD-MPPYAVVDENVELAKVALRPGAGNMVNGILRKLVVLKENGTLPLPKVEGDDRAQARALATLHSHPVWMVRRWTKYLGQEEAIKLMIWNNSEPSFSLRANRASGFSRDDLVAQLNELKVPHKLSLYLDEFVRIKTGLQIVIHAGLLKKGLCSVQDESAGLVISVVDPQPGETIVDGCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGV-ITAIHADLRTLTDNGQL----KSDKVLLDAPCSGLGVLSKRADLRWNRXXXXXXXXXXXXXXXXXAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFRID-HVDRFVP---------------PDFVTSSGFFFSN 1536
             ++ ELS  +  L+T++V GT++ +  LD+++    +      ++P ++Q+LR+  Y++  L+ +P  A + E VE+AK+    G  + VNG+LR +   +  G      +E       R LAT  SHP W+V+ W    G E A K+   +   P  +LR N+     R +L+ Q+    +  +     ++ V++  G     H    + G  S+QDES+ LV   +DP+  ET++D CAAPGGK+ ++A  +  +G V ++D++  +++++KE A     D + +T IHA+       G+     + D++L+DAPCSG GV+ ++ D+++ +K +D   L ++Q  +L   + LVK GG LVYSTC++D  END+ + AF+  HPDF  D  +++ +P               P +  + GFF  +
Sbjct:   32 IKSNELSDQNRGLLTELVYGTLQNKIALDYMLKPFINKP--QKVKPWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI---QREGVPSFDAIED----PVRRLATETSHPEWLVKEWADAYGFEAAEKICRIHLIPPKQTLRVNQMKA-DRAELLDQMAAEGIEVEKGDLAEDAVKLLKGTIAGTH--FFQNGEVSIQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKEAA-----DRLGLTIIHAETMDARKAGETFENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSARLAEIQLSILREIAPLVKKGGTLVYSTCTMDRTENDEVIHAFIQEHPDFEPDLSLEKRLPEKVRPFVRDGRLQILPHYFGTDGFFICS 442
[Close]
BLAST of Vigun08g210600.1 vs. DB:Swiss
Match: RSMB_YERPG (Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis bv. Antiqua (strain Angola) OX=349746 GN=rsmB PE=3 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 5.057e-46
Identity = 136/417 (32.61%), Postives = 214/417 (51.32%), Query Frame = 1 
Query:  328 RELSHHDLRLVTDIVGGTIRWRRYLDHLINSLCHDKDISSMEPLLLQILRIGFYEVVKLDMPPYAVVDENVELAKVALRPGAGNMVNGILRKLVVLKENGTLPLPKVEGDDRAQARALATLHSHPVWMVRRWTK-YLGQEEAIKLMIWNNSEPSFSLRANRASGFSRDDLVAQLNELKV---PHKLSLYLDEFVRIKTGLQIVIHAGLLKKGLCSVQDESAGLVISVVDPQPGETIVDGCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRTL-TDNGQLKSDKVLLDAPCSGLGVLSKRADLRWNRXXXXXXXXXXXXXXXXXAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFRIDHVDRFVPPDFVT------SSGFFFSNPVK 1545
            + +S  D  L+ ++  GT+R    L+  I  L   + ++  + +   ++ +G Y+++   +PP+A + E VE A V  RP    ++NG+LR+    ++   L    V  D           + HP W++ R  + Y  Q + I  +  NN  P   LR NR    SR + +  L +  +   PH   +Y D  VR+ T    V H    + G  +VQD SA   + ++DPQ GE I+D CAAPGGKT ++    + +  V AVD++  RL  +KE  +  Q+  V+     D R   T  G  + D++LLDAPCS  GV+ +  D++W R+  D+ EL +LQ E+++A    +K GGVLVY+TCSI PEEN  ++AAFL RHP+ ++        P            GFF++  +K
Sbjct:   34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM-ARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQLKGLINGVLRQFQ--RQQVELLERAVNNDSH---------YLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVNR-QHHSRSEYLELLTQADINAEPH--PIYRDA-VRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
[Close]
BLAST of Vigun08g210600.1 vs. DB:Swiss
Match: RSMB_YERPY (Ribosomal RNA small subunit methyltransferase B OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) OX=502800 GN=rsmB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 7.925e-46
Identity = 136/417 (32.61%), Postives = 214/417 (51.32%), Query Frame = 1 
Query:  328 RELSHHDLRLVTDIVGGTIRWRRYLDHLINSLCHDKDISSMEPLLLQILRIGFYEVVKLDMPPYAVVDENVELAKVALRPGAGNMVNGILRKLVVLKENGTLPLPKVEGDDRAQARALATLHSHPVWMVRRWTK-YLGQEEAIKLMIWNNSEPSFSLRANRASGFSRDDLVAQLNELKV---PHKLSLYLDEFVRIKTGLQIVIHAGLLKKGLCSVQDESAGLVISVVDPQPGETIVDGCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRTL-TDNGQLKSDKVLLDAPCSGLGVLSKRADLRWNRXXXXXXXXXXXXXXXXXAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFRIDHVDRFVPPDFVT------SSGFFFSNPVK 1545
            + +S  D  L+ ++  GT+R    L+  I  L   + ++  + +   ++ +G Y+++   +PP+A + E VE A V  RP    ++NG+LR+    ++   L    V  D           + HP W++ R  + Y  Q + I  +  NN  P   LR NR    SR + +  L +  +   PH   +Y D  VR+ T    V H    + G  +VQD SA   + ++DPQ GE I+D CAAPGGKT ++    + +  V AVD++  RL  +KE  +  Q+  V+     D R   T  G  + D++LLDAPCS  GV+ +  D++W R+  D+ EL +LQ E+++A    +K GGVLVY+TCSI PEEN  ++AAFL RHP+ ++        P            GFF++  +K
Sbjct:   34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM-ARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQLKGLINGVLRQFQ--RQQVELLERAVNNDSH---------YLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVNRLH-HSRSEYLELLTQADINAEPH--PIYRDA-VRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
[Close]
BLAST of Vigun08g210600.1 vs. DB:Swiss
Match: RSMB_YERPS (Ribosomal RNA small subunit methyltransferase B OS=Yersinia pseudotuberculosis serotype I (strain IP32953) OX=273123 GN=rsmB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 7.925e-46
Identity = 136/417 (32.61%), Postives = 214/417 (51.32%), Query Frame = 1 
Query:  328 RELSHHDLRLVTDIVGGTIRWRRYLDHLINSLCHDKDISSMEPLLLQILRIGFYEVVKLDMPPYAVVDENVELAKVALRPGAGNMVNGILRKLVVLKENGTLPLPKVEGDDRAQARALATLHSHPVWMVRRWTK-YLGQEEAIKLMIWNNSEPSFSLRANRASGFSRDDLVAQLNELKV---PHKLSLYLDEFVRIKTGLQIVIHAGLLKKGLCSVQDESAGLVISVVDPQPGETIVDGCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRTL-TDNGQLKSDKVLLDAPCSGLGVLSKRADLRWNRXXXXXXXXXXXXXXXXXAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFRIDHVDRFVPPDFVT------SSGFFFSNPVK 1545
            + +S  D  L+ ++  GT+R    L+  I  L   + ++  + +   ++ +G Y+++   +PP+A + E VE A V  RP    ++NG+LR+    ++   L    V  D           + HP W++ R  + Y  Q + I  +  NN  P   LR NR    SR + +  L +  +   PH   +Y D  VR+ T    V H    + G  +VQD SA   + ++DPQ GE I+D CAAPGGKT ++    + +  V AVD++  RL  +KE  +  Q+  V+     D R   T  G  + D++LLDAPCS  GV+ +  D++W R+  D+ EL +LQ E+++A    +K GGVLVY+TCSI PEEN  ++AAFL RHP+ ++        P            GFF++  +K
Sbjct:   34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM-ARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQLKGLINGVLRQFQ--RQQVELLERAVNNDSH---------YLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVNRLH-HSRSEYLELLTQADINAEPH--PIYRDA-VRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
[Close]
BLAST of Vigun08g210600.1 vs. DB:Swiss
Match: RSMB_YERPP (Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis (strain Pestoides F) OX=386656 GN=rsmB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 7.925e-46
Identity = 136/417 (32.61%), Postives = 214/417 (51.32%), Query Frame = 1 
Query:  328 RELSHHDLRLVTDIVGGTIRWRRYLDHLINSLCHDKDISSMEPLLLQILRIGFYEVVKLDMPPYAVVDENVELAKVALRPGAGNMVNGILRKLVVLKENGTLPLPKVEGDDRAQARALATLHSHPVWMVRRWTK-YLGQEEAIKLMIWNNSEPSFSLRANRASGFSRDDLVAQLNELKV---PHKLSLYLDEFVRIKTGLQIVIHAGLLKKGLCSVQDESAGLVISVVDPQPGETIVDGCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRTL-TDNGQLKSDKVLLDAPCSGLGVLSKRADLRWNRXXXXXXXXXXXXXXXXXAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFRIDHVDRFVPPDFVT------SSGFFFSNPVK 1545
            + +S  D  L+ ++  GT+R    L+  I  L   + ++  + +   ++ +G Y+++   +PP+A + E VE A V  RP    ++NG+LR+    ++   L    V  D           + HP W++ R  + Y  Q + I  +  NN  P   LR NR    SR + +  L +  +   PH   +Y D  VR+ T    V H    + G  +VQD SA   + ++DPQ GE I+D CAAPGGKT ++    + +  V AVD++  RL  +KE  +  Q+  V+     D R   T  G  + D++LLDAPCS  GV+ +  D++W R+  D+ EL +LQ E+++A    +K GGVLVY+TCSI PEEN  ++AAFL RHP+ ++        P            GFF++  +K
Sbjct:   34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM-ARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQLKGLINGVLRQFQ--RQQVELLERAVNNDSH---------YLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVNRLH-HSRSEYLELLTQADINAEPH--PIYRDA-VRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
[Close]
BLAST of Vigun08g210600.1 vs. DB:Swiss
Match: RSMB_YERPN (Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis bv. Antiqua (strain Nepal516) OX=377628 GN=rsmB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 7.925e-46
Identity = 136/417 (32.61%), Postives = 214/417 (51.32%), Query Frame = 1 
Query:  328 RELSHHDLRLVTDIVGGTIRWRRYLDHLINSLCHDKDISSMEPLLLQILRIGFYEVVKLDMPPYAVVDENVELAKVALRPGAGNMVNGILRKLVVLKENGTLPLPKVEGDDRAQARALATLHSHPVWMVRRWTK-YLGQEEAIKLMIWNNSEPSFSLRANRASGFSRDDLVAQLNELKV---PHKLSLYLDEFVRIKTGLQIVIHAGLLKKGLCSVQDESAGLVISVVDPQPGETIVDGCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRTL-TDNGQLKSDKVLLDAPCSGLGVLSKRADLRWNRXXXXXXXXXXXXXXXXXAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFRIDHVDRFVPPDFVT------SSGFFFSNPVK 1545
            + +S  D  L+ ++  GT+R    L+  I  L   + ++  + +   ++ +G Y+++   +PP+A + E VE A V  RP    ++NG+LR+    ++   L    V  D           + HP W++ R  + Y  Q + I  +  NN  P   LR NR    SR + +  L +  +   PH   +Y D  VR+ T    V H    + G  +VQD SA   + ++DPQ GE I+D CAAPGGKT ++    + +  V AVD++  RL  +KE  +  Q+  V+     D R   T  G  + D++LLDAPCS  GV+ +  D++W R+  D+ EL +LQ E+++A    +K GGVLVY+TCSI PEEN  ++AAFL RHP+ ++        P            GFF++  +K
Sbjct:   34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM-ARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQLKGLINGVLRQFQ--RQQVELLERAVNNDSH---------YLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVNRLH-HSRSEYLELLTQADINAEPH--PIYRDA-VRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
[Close]
BLAST of Vigun08g210600.1 vs. DB:Swiss
Match: RSMB_YERPE (Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis OX=632 GN=rsmB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 7.925e-46
Identity = 136/417 (32.61%), Postives = 214/417 (51.32%), Query Frame = 1 
Query:  328 RELSHHDLRLVTDIVGGTIRWRRYLDHLINSLCHDKDISSMEPLLLQILRIGFYEVVKLDMPPYAVVDENVELAKVALRPGAGNMVNGILRKLVVLKENGTLPLPKVEGDDRAQARALATLHSHPVWMVRRWTK-YLGQEEAIKLMIWNNSEPSFSLRANRASGFSRDDLVAQLNELKV---PHKLSLYLDEFVRIKTGLQIVIHAGLLKKGLCSVQDESAGLVISVVDPQPGETIVDGCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRTL-TDNGQLKSDKVLLDAPCSGLGVLSKRADLRWNRXXXXXXXXXXXXXXXXXAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFRIDHVDRFVPPDFVT------SSGFFFSNPVK 1545
            + +S  D  L+ ++  GT+R    L+  I  L   + ++  + +   ++ +G Y+++   +PP+A + E VE A V  RP    ++NG+LR+    ++   L    V  D           + HP W++ R  + Y  Q + I  +  NN  P   LR NR    SR + +  L +  +   PH   +Y D  VR+ T    V H    + G  +VQD SA   + ++DPQ GE I+D CAAPGGKT ++    + +  V AVD++  RL  +KE  +  Q+  V+     D R   T  G  + D++LLDAPCS  GV+ +  D++W R+  D+ EL +LQ E+++A    +K GGVLVY+TCSI PEEN  ++AAFL RHP+ ++        P            GFF++  +K
Sbjct:   34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM-ARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQLKGLINGVLRQFQ--RQQVELLERAVNNDSH---------YLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVNRLH-HSRSEYLELLTQADINAEPH--PIYRDA-VRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
[Close]
BLAST of Vigun08g210600.1 vs. DB:Swiss
Match: RSMB_YERPB (Ribosomal RNA small subunit methyltransferase B OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) OX=502801 GN=rsmB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 7.925e-46
Identity = 136/417 (32.61%), Postives = 214/417 (51.32%), Query Frame = 1 
Query:  328 RELSHHDLRLVTDIVGGTIRWRRYLDHLINSLCHDKDISSMEPLLLQILRIGFYEVVKLDMPPYAVVDENVELAKVALRPGAGNMVNGILRKLVVLKENGTLPLPKVEGDDRAQARALATLHSHPVWMVRRWTK-YLGQEEAIKLMIWNNSEPSFSLRANRASGFSRDDLVAQLNELKV---PHKLSLYLDEFVRIKTGLQIVIHAGLLKKGLCSVQDESAGLVISVVDPQPGETIVDGCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRTL-TDNGQLKSDKVLLDAPCSGLGVLSKRADLRWNRXXXXXXXXXXXXXXXXXAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFRIDHVDRFVPPDFVT------SSGFFFSNPVK 1545
            + +S  D  L+ ++  GT+R    L+  I  L   + ++  + +   ++ +G Y+++   +PP+A + E VE A V  RP    ++NG+LR+    ++   L    V  D           + HP W++ R  + Y  Q + I  +  NN  P   LR NR    SR + +  L +  +   PH   +Y D  VR+ T    V H    + G  +VQD SA   + ++DPQ GE I+D CAAPGGKT ++    + +  V AVD++  RL  +KE  +  Q+  V+     D R   T  G  + D++LLDAPCS  GV+ +  D++W R+  D+ EL +LQ E+++A    +K GGVLVY+TCSI PEEN  ++AAFL RHP+ ++        P            GFF++  +K
Sbjct:   34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM-ARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQLKGLINGVLRQFQ--RQQVELLERAVNNDSH---------YLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVNRLH-HSRSEYLELLTQADINAEPH--PIYRDA-VRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
[Close]
BLAST of Vigun08g210600.1 vs. DB:Swiss
Match: RSMB_YERPA (Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis bv. Antiqua (strain Antiqua) OX=360102 GN=rsmB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 7.925e-46
Identity = 136/417 (32.61%), Postives = 214/417 (51.32%), Query Frame = 1 
Query:  328 RELSHHDLRLVTDIVGGTIRWRRYLDHLINSLCHDKDISSMEPLLLQILRIGFYEVVKLDMPPYAVVDENVELAKVALRPGAGNMVNGILRKLVVLKENGTLPLPKVEGDDRAQARALATLHSHPVWMVRRWTK-YLGQEEAIKLMIWNNSEPSFSLRANRASGFSRDDLVAQLNELKV---PHKLSLYLDEFVRIKTGLQIVIHAGLLKKGLCSVQDESAGLVISVVDPQPGETIVDGCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRTL-TDNGQLKSDKVLLDAPCSGLGVLSKRADLRWNRXXXXXXXXXXXXXXXXXAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFRIDHVDRFVPPDFVT------SSGFFFSNPVK 1545
            + +S  D  L+ ++  GT+R    L+  I  L   + ++  + +   ++ +G Y+++   +PP+A + E VE A V  RP    ++NG+LR+    ++   L    V  D           + HP W++ R  + Y  Q + I  +  NN  P   LR NR    SR + +  L +  +   PH   +Y D  VR+ T    V H    + G  +VQD SA   + ++DPQ GE I+D CAAPGGKT ++    + +  V AVD++  RL  +KE  +  Q+  V+     D R   T  G  + D++LLDAPCS  GV+ +  D++W R+  D+ EL +LQ E+++A    +K GGVLVY+TCSI PEEN  ++AAFL RHP+ ++        P            GFF++  +K
Sbjct:   34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM-ARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQLKGLINGVLRQFQ--RQQVELLERAVNNDSH---------YLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVNRLH-HSRSEYLELLTQADINAEPH--PIYRDA-VRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHPEAQLTETGTTAAPGKQNLPHPEDGDGFFYAKIIK 428
The following BLAST results are available for this feature:
BLAST of Vigun08g210600.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
RSMB_SYNY31.539e-5535.07Probable ribosomal RNA small subunit methyltransfe... [more]
RSMB_BACSU2.127e-5530.61Probable ribosomal RNA small subunit methyltransfe... [more]
RSMB_YERPG5.057e-4632.61Ribosomal RNA small subunit methyltransferase B OS... [more]
RSMB_YERPY7.925e-4632.61Ribosomal RNA small subunit methyltransferase B OS... [more]
RSMB_YERPS7.925e-4632.61Ribosomal RNA small subunit methyltransferase B OS... [more]
RSMB_YERPP7.925e-4632.61Ribosomal RNA small subunit methyltransferase B OS... [more]
RSMB_YERPN7.925e-4632.61Ribosomal RNA small subunit methyltransferase B OS... [more]
RSMB_YERPE7.925e-4632.61Ribosomal RNA small subunit methyltransferase B OS... [more]
RSMB_YERPB7.925e-4632.61Ribosomal RNA small subunit methyltransferase B OS... [more]
RSMB_YERPA7.925e-4632.61Ribosomal RNA small subunit methyltransferase B OS... [more]
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023267RNA (C5-cytosine) methyltransferasePRINTSPR02008RCMTFAMILYcoord: 410..422
score: 72.66
coord: 511..528
score: 31.79
coord: 460..476
score: 62.14
coord: 313..327
score: 35.52
coord: 342..352
score: 73.1
IPR023268RNA (C5-cytosine) methyltransferase, putative Rsm-related, plantPRINTSPR02009RCMTFMUVIRPLcoord: 71..94
score: 81.94
coord: 210..223
score: 85.71
coord: 487..499
score: 52.99
coord: 95..111
score: 71.9
IPR006027NusB/RsmB/TIM44PFAMPF01029NusBcoord: 97..203
e-value: 2.5E-23
score: 82.8
NoneNo IPR availableGENE3D3.40.50.150coord: 228..528
e-value: 6.0E-67
score: 227.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..50
NoneNo IPR availableCDDcd02440AdoMet_MTasescoord: 340..466
e-value: 2.08104E-7
score: 47.4247
IPR035926NusB-like superfamilyGENE3D1.10.940.10coord: 94..220
e-value: 3.0E-25
score: 90.8
IPR035926NusB-like superfamilySUPERFAMILY48013NusB-likecoord: 102..237
IPR004573rRNA small subunit methyltransferase BTIGRFAMTIGR00563TIGR00563coord: 107..527
e-value: 1.9E-85
score: 285.6
IPR001678SAM-dependent methyltransferase RsmB/NOP2-typePFAMPF01189Methyltr_RsmB-Fcoord: 332..526
e-value: 1.5E-50
score: 171.6
IPR001678SAM-dependent methyltransferase RsmB/NOP2-typePROSITEPS51686SAM_MT_RSMB_NOPcoord: 253..529
score: 52.698
IPR029063S-adenosyl-L-methionine-dependent methyltransferaseSUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 225..528

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun08g210600.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g210600.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g210600.1; organism=Vigna unguiculata; type=mRNA; length=2610bp
TGATGAACGATTTTCCGGAGAAAAGAGATGAACCAAGAACAAGAGGAGAA
AATTTAGGATGGAAAATGGTGTTTTTGGATAAAGGGAGAATTATTTGGTT
TATGATGTAACGCGTTAGCCAATGTGTCGTCGTGTAGATAATAGAGAATG
CGAGTTGAAAAAAAGGAACAACTTGAAATGGGAAAGGAAGAAACCAATCA
CAACCTAGTTTAACAAATGATGTATTATTAAGGATAAAATATATTTAAGT
TGAaataataatgataataatttttatataatTCCATGGCTTATATACTA
TTTTTTGGAATTTTGATTTGATGGTTTATTCTTGAAATGAAAAAAGAAGA
AGAAGAAACCTTTATTATCCAAATAGCAAAGCCAAAGAAACGAGTACGAA
GTTAGGAATCGAAGGTCGAAAGAATCTAAGCATGGCGCAGGTGCTGTATA
TGGCTTTACCTGTCCCCGCAAAACCCCGCAAAGCTGCATTATCATCTTCT
TCTTCCAAGCCATTGAAGTTTCCCCGTAGAAGCCGCAGCACCAACATATC
CATTCCCACCACTTCCAAAGGCAGTGGCAAACGTTTGCTCAAACCCCAGA
AGCTGAATTTAGAGGTTTCTCCTCATAGAGCTGTTTCAGCGGTGAGGTTG
ATGCGAATTGAGCTCGGTGGTGCTTTTGCTGACCTTCTCAACGAGAAAGG
GAAAGGTTCTGGTGAAAACGAGATGGGGTATGTTCAAAGAACGCTCGGTT
TTCGCACTCGGGAGTTGAGTCATCACGACCTTAGATTGGTCACAGACATT
GTTGGTGGCACAATTCGCTGGAGAAGATATCTTGATCATCTGATCAATTC
ACTATGTCATGATAAAGATATATCTAGCATGGAACCTCTTCTCTTACAGA
TTCTACGAATTGGCTTCTATGAGGTTGTCAAATTGGACATGCCACCTTAT
GCTGTTGTAGATGAGAACGTGGAGCTTGCTAAAGTTGCTCTCAGACCTGG
GGCTGGCAACATGGTCAACGGAATCCTCCGAAAGCTAGTTGTGCTTAAGG
AGAACGGTACTCTTCCTTTGCCCAAAGTGGAGGGTGATGACCGTGCTCAA
GCACGTGCGTTGGCAACTCTGCACTCACATCCAGTTTGGATGGTAAGGAG
ATGGACAAAGTATCTCGGCCAGGAAGAAGCCATTAAATTGATGATATGGA
ACAACAGTGAGCCCAGTTTCAGCTTAAGAGCAAATCGTGCAAGTGGTTTT
TCAAGAGATGACCTTGTAGCACAGCTTAATGAATTGAAGGTCCCACACAA
GCTTTCATTGTATTTAGATGAATTTGTTCGTATCAAAACTGGGTTGCAGA
TTGTCATTCATGCTGGTCTGCTCAAAAAGGGTTTATGTTCAGTTCAGGAC
GAAAGTGCAGGTCTAGTAATTTCTGTTGTGGATCCTCAACCTGGTGAAAC
TATCGTCGATGGCTGTGCTGCTCCTGGTGGGAAGACCCTCTACATGGCCT
CTCATTTAAGTGGCCAAGGCAAGGTATTTGCAGTTGATGTAAATAGTGGT
AGGTTGAGAATTCTTAAAGAGACAGCAAAGTTGCACCAAGTGGATGGTGT
CATTACCGCCATTCATGCTGATCTTCGCACATTGACTGATAATGGACAAC
TTAAGAGTGACAAAGTTTTGTTGGACGCTCCATGTTCTGGACTTGGTGTT
CTATCCAAGAGAGCGGACTTGCGCTGGAACAGGAAGCTTGAGGATATGGA
AGAACTGAAGAAATTACAAGATGAGCTCCTGGATGCAGCATCCAAATTGG
TAAAACCTGGGGGAGTATTAGTTTACAGTACATGCTCCATAGATCCTGAA
GAGAACGATGACAGGGTGGCTGCATTTCTTGTAAGACATCCGGATTTCCG
CATTGATCATGTAGACAGATTTGTTCCTCCTGATTTTGTGACAAGCAGTG
GTTTCTTTTTCTCTAACCCCGTTAAACATTCACTAGATGGTTCCTTTGCT
GCTCGTTTAGTACGTGATCCATAGAACTTCTGGGAAGGAATCCTTTGTGG
ATTTATCGCCAAATATATACAGTTTGGTGAAAAATGAAGAGGCTGCTTAT
GAGTTGTGGCTGTTCTGGTATATCTCTCCATGTGTTCATAAATTGAAATC
AAGCATTTACCCTGCAGTGGGATACTGCACTTCCAGAACAGGCATTCTGA
TTTCTCCTCAAAGATATGCGAAGAATGAGATTGTCAGCAGGTTCTATTTC
ACCAGGAACTCTGGAAGAATGATGAACTGATGATCCTTAAAACAAGTACG
GATAGGATTTCTGAGTGGAAAGTCCAAGCTTCAAAGATTTCTCCAGCATA
ATTACTGCAGTTTCAGGAGATTACTTTGAGAGTAATGTTACCTTGGAATG
TTGTCTTCTAGGAGTGTTTGTAGCTTGATTTAGTTCAGTTTTGTATTAAA
AAGGCATTTGAATCAAACATCAGATATAATGTAGTTTGATTCGGTTTTAA
TTTAATATAAAATCTGAATCATACCAAATCAATTTTTCAAACTACAGTTT
AATTTAGTTTTAGAGGTTGGTATTATTTTAAAACATTTTATAACGAGAAA
GTATATCATA
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protein sequence of Vigun08g210600.1_Vu_IT97K-499-35_v1.1

>Vigun08g210600.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g210600.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g210600.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=531bp
MAQVLYMALPVPAKPRKAALSSSSSKPLKFPRRSRSTNISIPTTSKGSGK
RLLKPQKLNLEVSPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGY
VQRTLGFRTRELSHHDLRLVTDIVGGTIRWRRYLDHLINSLCHDKDISSM
EPLLLQILRIGFYEVVKLDMPPYAVVDENVELAKVALRPGAGNMVNGILR
KLVVLKENGTLPLPKVEGDDRAQARALATLHSHPVWMVRRWTKYLGQEEA
IKLMIWNNSEPSFSLRANRASGFSRDDLVAQLNELKVPHKLSLYLDEFVR
IKTGLQIVIHAGLLKKGLCSVQDESAGLVISVVDPQPGETIVDGCAAPGG
KTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRT
LTDNGQLKSDKVLLDAPCSGLGVLSKRADLRWNRKLEDMEELKKLQDELL
DAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFRIDHVDRFVPP
DFVTSSGFFFSNPVKHSLDGSFAARLVRDP*
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mRNA from alignment at Vu08:37243333..37250852-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun08g210600.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g210600.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g210600.1; organism=Vigna unguiculata; type=mRNA; length=7520bp; location=Sequence derived from: Vu08:37243333..37250852- (Vigna unguiculata
TGATGAACGATTTTCCGGAGAAAAGAGATGAACCAAGAACAAGAGGAGAA
AATTTAGGATGGAAAATGGTGTTTTTGGATAAAGGGAGAATTATTTGGTT
TATGATGTAACGCGTTAGCCAATGTGTCGTCGTGTAGATAATAGAGAATG
CGAGTTGAAAAAAAGGAACAACTTGAAATGGGAAAGGAAGAAACCAATCA
CAACCTAGTTTAACAAATGATGTATTATTAAGGATAAAATATATTTAAGT
TGAAATAATAATGATAATAATTTTTATATAATTCCATGGCTTATATACTA
TTTTTTGGAATTTTGATTTGATGGTTTATTCTTGAAATGAAAAAAGAAGA
AGAAGAAACCTTTATTATCCAAATAGCAAAGCCAAAGAAACGAGTACGAA
GTTAGGAATCGAAGGTCGAAAGAATCTAAGCATGGCGCAGGTGCTGTATA
TGGCTTTACCTGTCCCCGCAAAACCCCGCAAAGCTGCATTATCATCTTCT
TCTTCCAAGCCATTGAAGTTTCCCCGTAGAAGCCGCAGCACCAACATATC
CATTCCCACCACTTCCAAAGGTAACGACAAACAAAGCATGCTTTTTCATT
TCCTGCTACAATGCTTCTACTTCATTCAATGCTTCCTTCACTATTGCAAA
AAAAAAAATGAAACTTTCAGGCAGTGGCAAACGTTTGCTCAAACCCCAGA
AGCTGAATTTAGAGGTTTCTCCTCATAGAGCTGGTACATCTACTTTTTCC
CTCATCGTCGTGTGTGCTTTGAAAGAAAGGGGAGTTTTTTATTTGTTGGT
TTGGTTTTGTCGATGTTGTAGTTTCAGCGGTGAGGTTGATGCGAATTGAG
CTCGGTGGTGCTTTTGCTGACCTTCTCAACGAGAAAGGGAAAGGTTCTGG
TGAAAACGAGATGGGGTATGTTCAAAGAACGCTCGGTTTTCGCACTCGGG
AGTTGAGTCATCACGACCTTAGATTGGTTAGTGTTGTTTGTTATCACTTT
GAACCCTTTTTCTGCTCTGCTTCATAACTTACAGTGCAAAATGTTATTTC
TTTCTTATATTTAAATATTCTCTTTAATATCTAATAACTTCAAGATTGAT
GCTTTGGTCAATGGCAACAACTTTTCTATTTTCATATCAATAATTCAATA
TATAAATGAGTTTTTGTTGTCTTTTGTGAAAGTGGTATATGGGAATGATC
GAATGATCGCTTATCTTCATCTGAGATTAAGCATACTGTACGAGTATAAT
GCTTGATTTACAGTTCAAATTAGTCGTTGATTACTTCCCCCAATTTCTCC
TATTTGATCAGACTTTGCAAAATCCAGAGTATTATCAGTCCTTTTTAGGC
TGAAACTTTGAAGTATTTTGAGTTTTAAACTAAACACCTGTTCATATTAC
TTCATCAACAAATTATTGATTCTTTTCTCTGTTCGAACTACAAATTACAT
AGGTCACAGACATTGTTGGTGGCACAATTCGCTGGAGAAGATATCTTGAT
CATCTGATCAATTCACTATGTCATGATAAAGATATATCTAGCATGGAACC
TCTTCTCTTACAGGTGAATTTGAGCTCTATATTTCTTACGATCATGTTTG
TTTCAGTCACTGGCTAATTGAATTCGTCATATACAGCACAAACAGAGAGA
GGGTAAAGAAAAGAGCAAAATTACATTTTTTTTTTTAATTTCGTCGAACA
CTGCCCATTAAAGATTTTCTGCTGGATCTTTGAAATAAAGTACATGGTGT
AGTTAAACATTCATCAGCCTGACTTATGTTCTTTGGACATTATTAATGAT
CTTAGTACTTTAATTGGTTCAGATTCTACGAATTGGCTTCTATGAGGTTG
TCAAATTGGACATGCCACCTTATGCTGTTGTAGATGAGGTACTTTTTTTG
GCCCATGTGTAATTCTTGTTTAGTAGATGAATTGGTTCAATTCATATTTC
ATAAGGCTTGAGAAAATATCATAAAGATTATAATTTGAATAATGGATATG
AATTAAATTTATAGTTGCAAAGGATTTTCATTTGTTGAATTCAATTTGTT
TAATGTTGTGGTAGAGATGATGTGTTATGCTTACGTGTTTTATTGTTTTG
AAATTCAACCTATATTTCTTTTTTTTTTCTTTTTCTGAATAATTAGTTTT
TGTAAATAAATTCTGAAGTCATGTTACTGTAATTTTGACTGGTTAATTTT
GAGGTTTTGGTTCAATACTATAGTCCAACCTTCTCTTCGTTGTAGTATGA
ATCTGCTGTATGAAATGCAGAACGTGGAGCTTGCTAAAGTTGCTCTCAGA
CCTGGGGCTGGCAACATGGTCAACGGAATCCTCCGAAAGCTAGTTGTGCT
TAAGGTTTTACTTTTTGTATATTGAATATCTTAACTGTAAGAGTGGGAAA
TCATGAAGAATTTTATCAAATACATTGATGTTTGGTTTGCAGGAGAACGG
TACTCTTCCTTTGCCCAAAGTGGAGGGTGATGACCGTGCTCAAGCACGTG
CGTTGGCAACTCTGCACTCACATCCAGTTGTGAGTGACTTACTGCTTTCA
CTTTTTCTCTACCTCAAGTCGTTATTCTAATTTAGGAAAATTCAGAAGTA
GGAATCACTGCATCAGAGACCGATAAGCATAAAACCTTTTATTTTGTGCT
CAGCAATAACCTCTATTCCATTGAAGTATGGGTACGGTATAAGCTTAAGA
TATTCAAAATGTCTGTAAACAAAAAATTCAACAAAGAAGAATTGGAACTA
TTTAGTTTGTACTCATTTTCTACAATGCTCTAGCATACCTAAAGTGCTAT
GCTATTGGTATTTTCTTAATATTTTGTGGTTGTTATCAAAACATAATTAA
TAGGCTAACGTTGAAGGCCATAAACTTTTTATTTAGAAGGTGGAATTTGT
ATTTCAGAATTTAGATACAGTACACTAAAATCTAATGTTTCTCACTTTGA
ATGGTGGTTTCTTGGTTGTTTATATTCTCAGGTTAGTATCATTGGTCAAA
CATAAGTTTGCTGTACCTAAGATCAAATGCCTAGATAAATATATCCTAAA
TGTCTATCCCTGTTATATGCAAGAAGAGGTTTAAGAGTATTCTGTTAGGA
TATAAGGAGAAGAGACGTAAGTTAAGATAGTTAGAATATTAATGAGTAAG
TTACCTGAGGTGTTCGTTTGAAAAATTCTCAGATGCAAGAAGGTTCGGTA
ATGAAGAATCACACCCTCTGTAGTGGAGAAAAAACAAAAAATGAGGTGAG
GTTAGCAAGAGAAATAAAAATCATTATGGAGGAAGAAGTGGATGCATCAA
CAAAGAGAGTGAAGATTATGGACTCGAGGTCAGAAAAAAGGAGATAAATC
TCTCCTCAGACTGTTTACCCTTTTACACAAAGCTAATGCTTTGTTTACAA
TTGATAAACATAAAACGTCCCCATCTCTCTTGCATCCTCATATTCTTTAT
CTCTATCTAGTTAACCCCTCTAACTTAACTAACCACTAATTTCCTTTCTC
TGTTCTAAATTATAACAATGAACAAATTTGTTTACCTTATTTGGCATAAC
CATGTTAGTTTACTTTTTCTATAAAGCAAAGTATAGTAGGGATATATTAC
TCCAATAGTACTACCCAAGGTTCCAATTGGCATATTTGGGATCCTACATG
GGAAGGAAGAGGACCACTGTATAATGAATAGTTTAGTATTCTTTTAACCA
AACTAACATGTAAAGGTTAACAAAAGGAACTTCGCAATTTACTAAAGTTG
CTATCAACAAACTAAGGTAAGTAAAATTTAATCGAAACATTTTCTTATTG
TTCCTTTTGCAGTGGATGGTAAGGAGATGGACAAAGTATCTCGGCCAGGA
AGAAGCCATTAAATTGATGATATGGAACAACAGTGAGCCCAGTTTCAGCT
TAAGGCTAGTGAATATTTTTATGATAATTTCAGAGCTATGGGTAGTATGT
AACACAAATACACAAGCAATAAAGAACTCAAGCTATATTTTTATGATAAT
TTCAGAGCAAATCGTGCAAGTGGTTTTTCAAGAGATGACCTTGTAGCACA
GCTTAATGAATTGAAGGTGCTACCTCTGTCATGATTGAATGTGGCATTTG
CTTATCACAGTATCTGCTTTTTATTTTATTTTTATTGTTTAATGTTTTTG
TACATTTATAAAATTCTGCATTTTTTTCAATGAATTCCTTTCTTTCTCAT
CAGGTTTGAGCAGAAGTTCATGTTACATTTGCACTATACAATTGTATATT
ACCTTTTACTCTATATCGTCAACGTCTTCCTGACAGATTTAAGTTTCAGG
TCCCACACAAGCTTTCATTGTATTTAGATGAATTTGTTCGTATCAAAACT
GGGTTGCAGGTATGAATTTCCTTGTGCGAGTATTATGAATTTCTATGGAG
TCAAACACTGATTAGAGGAGAAAAACCATTGGGACTGAACTATATGCATA
TTTTCTACCTTATGTAATAATAGCTATTAGGTTCAACATTGTGTAATTGT
GCTTTAGCTAAATACTTGCTTGCTTTGGGTTATCTTTTACTTTAATTTCT
TTTATATTTTTTCACATGGGAGGCATTGGAGTTATATTTGTTTTTGCTGT
TACTAGCTCTTATGAAGTAAGCATGACTTTCTCGTTTAAGCTGACTGTTT
ATAGGCTCGTATTTCAGATTGTCATTCATGCTGGTCTGCTCAAAAAGGGT
TTATGTTCAGTTCAGGACGAAAGTGCAGGTCAACCTGTCATCTTTTCTCA
TAGAAGGGATTCATATAAGGCAGTAATATCTAAAGTTTATTTTCTCCTCT
TTTGCTTTTCACTTGGAACACTGCCACTGGCCTCTGCTTTGCTAGATGAC
CCACCAGGCATAATACATTATTTTATGCATTCATGTTCCTATATTGGTTT
TCTTTGTAAGATTTTGTTGTGATTGATGGAATTTGTGACCAAAGGCCTTG
CATTTACACACGCACTATTTTACCCAATATGCTAATCAATGTATAGATTT
CAACCGGTCTTTATTTTCCTTTTTGAATTTAAAGAAATTTTTACTTTGCA
TGGTTGGATTATCGTACAGTGTGTCATATCCTTGGTTACAGGTCTAGTAA
TTTCTGTTGTGGATCCTCAACCTGGTGAAACTATCGTCGATGGCTGTGCT
GCTCCTGGTGGGAAGACCCTCTACATGGCCTCTCATTTAAGTGGCCAAGG
TACTAATTCGTCTAAGATATTTTATTAAATCATTGAATTTCAATTTCTTC
AGATGCGCTCATAAATATTTTCTTTCCTTTTCTTTCGAGGAGATTTGTTT
CGGACACTTATTGTTTTCGTGAGTTAAATATTTTGAACCTGGGAGTTGGA
AATATAAAAGCTTTGTAAAACATGAACATCGTTTCAGATCCCCTCTCCCC
ACGGATCCACCCATAAAATGTAGCAGAAGTCGTGTTCTCCGTTGGAGATA
ATAATCTCCTTCGATCTTCATTCATTCTGGCTATGAGACTGTTTTTGTCT
ACAATGTTCTAACTTAACTTACTAATTTGTTGATATACTAGTTTCTTGCT
TTTTTATTTTTCCATTCAGCAGAATAAAAGGAAAGCTTGTGTTTTCAGGC
AAGGTATTTGCAGTTGATGTAAATAGTGGTAGGTTGAGAATTCTTAAAGA
GACAGCAAAGTTGCACCAAGTGGATGGTGTCATTACCGCCATTCATGCTG
ATCTTCGCACATTGACTGTATGTTATTTTCTCCCTGTAAGTGTCAACTCT
GAAATTGCTATTTAATTATTTCTCATTAGTTTTCTTTTGGATTTCCCAGG
ATAATGGACAACTTAAGAGTGACAAAGTTTTGTTGGACGCTCCATGTTCT
GGACTTGGTGTTCTATCCAAGGTGATTGTGTTAAAATACGTTTCCTCATT
GTCATTGTTCTCACAAATTATTCAGTATACTTCCCTTTTGTTTATTAATC
TGTTTCTATTCCTCGGCTTTTGAAGAGAGCGGACTTGCGCTGGAACAGGA
AGCTTGAGGATATGGAAGAACTGAAGAAATTACAAGATGAGCTCCTGGAT
GCAGCATCCAAGTAAGCAGGAGATTCCCTTTGATGTTCCCTCTTTGTTTC
TGTACATTATCTTTTGTCCAGTGAATACATTGAATGAAGTGACAAAAAGC
TTCACATGCTGGTTGCTTATTGCATAATCAATCAAGGCTTGTTGTTGTAT
GCTGATATGAAAACTTGAGTATACTAATTTCGAAATAATCTCTGTAGTAG
TAGATGAAACTAATGGTAGATTGTTTCCCTAATGCATTATTTTTGCACAT
TTAGATTGGTAAAACCTGGGGGAGTATTAGTTTACAGTACATGCTCCATA
GATCCTGAAGAGAACGATGACAGGGTGGCTGCATTTCTTGTAAGACATCC
GGTAAGAATTATCACTACTCACTAATCTATTCAAATATTCTAATCTTTTG
TATAAAATACTCTTTCATTTTCTGAATTGCACTACTATAGCTGATGTTAT
AAATGATAAATCCTCCTTTTAAGCTTGGTGACGGGCTTCTTTAGAGAAAT
TGGATGCTATTTACGTTTCAGGAATATTGTCGAATAGCATTTGGAGTTAC
TGGAAGTTTATAGAAATTAAATGTTCTGCATGTCTTTGATTAGGTCTCTG
TAAACCTTTTAGGACATGATTGTCTGATTCTATTTTGAGTTTTTGACACA
GCAGAAGGAATTAAACAGGAACAACATGCATATCATTCTCTTTGGAGATC
AGTACTTTGGTTTCCCCTTTCAACTGCTAATTTACTATTATTTGAATTCC
AGGATTTCCGCATTGATCATGTAGACAGATTTGTTCCTCCTGATTTTGTG
ACAAGCAGTGGTTTCTTTTTCTCTAACCCCGTTAAACATTCACTAGATGG
TTCCTTTGCTGCTCGTTTAGTACGTGATCCATAGAACTTCTGGGAAGGAA
TCCTTTGTGGATTTATCGCCAAATATATACAGTTTGGTGAAAAATGAAGA
GGCTGCTTATGAGTTGTGGCTGTTCTGGTATATCTCTCCATGTGTTCATA
AATTGAAATCAAGCATTTACCCTGCAGTGGGATACTGCACTTCCAGAACA
GGCATTCTGATTTCTCCTCAAAGATATGCGAAGAATGAGATTGTCAGCAG
GTTCTATTTCACCAGGAACTCTGGAAGAATGATGAACTGATGATCCTTAA
AACAAGTACGGATAGGATTTCTGAGTGGAAAGTCCAAGCTTCAAAGATTT
CTCCAGCATAATTACTGCAGTTTCAGGAGATTACTTTGAGAGTAATGTTA
CCTTGGAATGTTGTCTTCTAGGAGTGTTTGTAGCTTGATTTAGTTCAGTT
TTGTATTAAAAAGGCATTTGAATCAAACATCAGATATAATGTAGTTTGAT
TCGGTTTTAATTTAATATAAAATCTGAATCATACCAAATCAATTTTTCAA
ACTACAGTTTAATTTAGTTTTAGAGGTTGGTATTATTTTAAAACATTTTA
TAACGAGAAAGTATATCATA
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Coding sequence (CDS) from alignment at Vu08:37243333..37250852-

>Vigun08g210600.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g210600.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g210600.1; organism=Vigna unguiculata; type=CDS; length=1593bp; location=Sequence derived from: Vu08:37243333..37250852- (Vigna unguiculata
ATGGCGCAGGTGCTGTATATGGCTTTACCTGTCCCCGCAAAACCCCGCAA
AGCTGCATTATCATCTTCTTCTTCCAAGCCATTGAAGTTTCCCCGTAGAA
GCCGCAGCACCAACATATCCATTCCCACCACTTCCAAAGGCAGTGGCAAA
CGTTTGCTCAAACCCCAGAAGCTGAATTTAGAGGTTTCTCCTCATAGAGC
TGTTTCAGCGGTGAGGTTGATGCGAATTGAGCTCGGTGGTGCTTTTGCTG
ACCTTCTCAACGAGAAAGGGAAAGGTTCTGGTGAAAACGAGATGGGGTAT
GTTCAAAGAACGCTCGGTTTTCGCACTCGGGAGTTGAGTCATCACGACCT
TAGATTGGTCACAGACATTGTTGGTGGCACAATTCGCTGGAGAAGATATC
TTGATCATCTGATCAATTCACTATGTCATGATAAAGATATATCTAGCATG
GAACCTCTTCTCTTACAGATTCTACGAATTGGCTTCTATGAGGTTGTCAA
ATTGGACATGCCACCTTATGCTGTTGTAGATGAGAACGTGGAGCTTGCTA
AAGTTGCTCTCAGACCTGGGGCTGGCAACATGGTCAACGGAATCCTCCGA
AAGCTAGTTGTGCTTAAGGAGAACGGTACTCTTCCTTTGCCCAAAGTGGA
GGGTGATGACCGTGCTCAAGCACGTGCGTTGGCAACTCTGCACTCACATC
CAGTTTGGATGGTAAGGAGATGGACAAAGTATCTCGGCCAGGAAGAAGCC
ATTAAATTGATGATATGGAACAACAGTGAGCCCAGTTTCAGCTTAAGAGC
AAATCGTGCAAGTGGTTTTTCAAGAGATGACCTTGTAGCACAGCTTAATG
AATTGAAGGTCCCACACAAGCTTTCATTGTATTTAGATGAATTTGTTCGT
ATCAAAACTGGGTTGCAGATTGTCATTCATGCTGGTCTGCTCAAAAAGGG
TTTATGTTCAGTTCAGGACGAAAGTGCAGGTCTAGTAATTTCTGTTGTGG
ATCCTCAACCTGGTGAAACTATCGTCGATGGCTGTGCTGCTCCTGGTGGG
AAGACCCTCTACATGGCCTCTCATTTAAGTGGCCAAGGCAAGGTATTTGC
AGTTGATGTAAATAGTGGTAGGTTGAGAATTCTTAAAGAGACAGCAAAGT
TGCACCAAGTGGATGGTGTCATTACCGCCATTCATGCTGATCTTCGCACA
TTGACTGATAATGGACAACTTAAGAGTGACAAAGTTTTGTTGGACGCTCC
ATGTTCTGGACTTGGTGTTCTATCCAAGAGAGCGGACTTGCGCTGGAACA
GGAAGCTTGAGGATATGGAAGAACTGAAGAAATTACAAGATGAGCTCCTG
GATGCAGCATCCAAATTGGTAAAACCTGGGGGAGTATTAGTTTACAGTAC
ATGCTCCATAGATCCTGAAGAGAACGATGACAGGGTGGCTGCATTTCTTG
TAAGACATCCGGATTTCCGCATTGATCATGTAGACAGATTTGTTCCTCCT
GATTTTGTGACAAGCAGTGGTTTCTTTTTCTCTAACCCCGTTAAACATTC
ACTAGATGGTTCCTTTGCTGCTCGTTTAGTACGTGATCCATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR023267RCMT
IPR023268RCMT_RsmB-rel_pln
IPR006027NusB_RsmB_TIM44
IPR035926NusB-like_sf
IPR004573rRNA_ssu_MeTfrase_B
IPR001678MeTrfase_RsmB-F_NOP2_dom
IPR029063SAM-dependent_MTases_sf
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription
GO:0006364rRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0008649rRNA methyltransferase activity
GO:0008168methyltransferase activity