Vigun08g218000.2

Transcript Overview


Name	Vigun08g218000.2
Unique Name	Vigun08g218000.2_Vu_IT97K-499-35_v1.1
Type	mRNA
Organism	Vigna unguiculata (cowpea)
Sequence length	2595

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Vu08	supercontig	Vu08:37785452..37790480 +	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	2019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	2019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot	2019-10-17

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
psvuL166	Pisum sativum Cameor genome v1a	Pisum sativum
crvuL191	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
pvvuL701	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
cavuL067	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
cavuL135	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
caivuL0194	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ccvuL0218	Cajanus cajan Asha genome v1.0	Cajanus cajan
anvuL0195	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvuL0636	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvuL1203	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
asvuL691	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
vuzwsR570	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
tifvuL088	Vicia faba cv. Tiffany genome v1.0	Vicia faba
vfhvuL081	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
vrvvuL447	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
vssvuL829	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vuvuaR398	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
canvuL128	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
avjvuL598	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
carvuL138		Cicer arietinum
ccavuL423	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
vuvumR678	Vigna umbellata FF25 genome v1.0	Vigna umbellata
vuvvaR736	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
vstvuL287	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vasvuL301	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
pvfvuL616	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
vuvunR456	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Orthologs


Gene/Transcript	Assembly	Species
rna-TanjilR_00842	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
Vum_03G00078.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
rna-XM_014649565.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
evm.model.Chr08.767.1.62113170	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
jg99.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
XM_058888994.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
Vfaba.Hedin2.R1.1g285360.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Cr_03303.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
Cc_v2.0_12718.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
rna-KK1_030224	Cajanus cajan Asha genome v1.0	Cajanus cajan
Vigan.03G010200.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Ca_07884	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
Vfaba.Tiffany.R1.1g231200.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Ca_03188.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
Psat02G0008100-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
PvulFLAVERTChr08.1794	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
rna-TanjilR_19150	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
LR48_mrnaVigan07g004000	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Vigst.03G006500.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
rna-XM_004491534.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
Va07G001540.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Phvul.008G286500.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Ca_09790	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Vigun08g218000.2	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Vigun08g218000	Vigun08g218000_Vu_IT97K-499-35_v1.1	Vigna unguiculata	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Vigun08g218000.2	Vigun08g218000.2_Vu_IT97K-499-35_v1.1-protein	Vigna unguiculata	polypeptide
Vigun08g218000.2_Vu_IT97K-499-35_v1.1	Vigun08g218000.2_Vu_IT97K-499-35_v1.1	Vigna unguiculata	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vigun08g218000.2.v1.1.five_prime_UTR.1	Vigun08g218000.2.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	five_prime_UTR
Vigun08g218000.2.v1.1.five_prime_UTR.2	Vigun08g218000.2.v1.1.five_prime_UTR.2_Vu_IT97K-499-35_v1.1	Vigna unguiculata	five_prime_UTR
Vigun08g218000.2.v1.1.five_prime_UTR.3	Vigun08g218000.2.v1.1.five_prime_UTR.3_Vu_IT97K-499-35_v1.1	Vigna unguiculata	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vigun08g218000.2.v1.1.CDS.1	Vigun08g218000.2.v1.1.CDS.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	CDS
Vigun08g218000.2.v1.1.CDS.2	Vigun08g218000.2.v1.1.CDS.2_Vu_IT97K-499-35_v1.1	Vigna unguiculata	CDS
Vigun08g218000.2.v1.1.CDS.3	Vigun08g218000.2.v1.1.CDS.3_Vu_IT97K-499-35_v1.1	Vigna unguiculata	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vigun08g218000.2.v1.1.three_prime_UTR.1	Vigun08g218000.2.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	three_prime_UTR

Homology

[Close]

BLAST of Vigun08g218000.2 vs. DB:Swiss
Match: RNP1_ARATH (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 3.467e-72
Identity = 106/192 (55.21%), Postives = 151/192 (78.65%), Query Frame = 1

Query:    1 MQSDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEIVIKEKHNIDGRMVEAKKAVPRDDQNILSR----NSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSP 564
            M SD GKLF+GGISW+T+E++LRE+F+ YGEV +A++M+D+ TGR RGFGFV+FSDP+V + V++EKH+ID R V+ K+A+ R++Q +  R    N+    G     +T+KIFVGGL  T+T+ +F++YF+ +G +TDV +MYD  T RPRGFGF+++DSE+AVD VL KTFH+L+GK VEVKRA+PK+ +P
Sbjct:    1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANP 192

[Close]

BLAST of Vigun08g218000.2 vs. DB:Swiss
Match: DAZP1_XENLA (DAZ-associated protein 1 OS=Xenopus laevis OX=8355 GN=dazap1 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 4.243e-57
Identity = 109/241 (45.23%), Postives = 145/241 (60.17%), Query Frame = 1

Query:   16 GKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDP-AVAEIVIKEKHNIDGRMVEAKKAVPRDDQNILSR-NSGSIHGSPGP--GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP---KELSPGPSRTPLGGYNYGLSRVNSFLNGFT-------QGYSP--------STVGGY 672
            GKLF+GG+ W T +E LR YFS YGEVV+ VIMKD+TT ++RGFGFV F DP  V  ++    H +DGR ++ K   PR  Q   SR   G     P     R+ KIFVGG+     E++ K+YF++FG +T+VV++YD   QRPRGFGFIT++ E++VD+ +   FH++ GK VEVKRA P   K  +PGP     G   +G   + S  NG+T       QGYSP         T+GGY
Sbjct:   10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQTPGPP----GSNQWGSRAMQSTANGWTGQPPQTWQGYSPQGMWMPTGQTIGGY 246

HSP 2 Score: 71.2478 bits (173), Expect = 3.491e-12
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 1

Query:    7 SDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDP-AVAEIVIKEKHNIDGRMVEAKKAVPRDDQN 261
            S + K+F+GGI  +  E  L+EYF+ +G V E V++ D    R RGFGF+ F D  +V + V    H+I G+ VE K+A PRD ++
Sbjct:  111 SRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKS 196

[Close]

BLAST of Vigun08g218000.2 vs. DB:Swiss
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=Rbp6 PE=2 SV=3)

HSP 1 Score: 188.734 bits (478), Expect = 4.845e-54
Identity = 92/185 (49.73%), Postives = 124/185 (67.03%), Query Frame = 1

Query:    7 SDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDP-AVAEIVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKEL 558
            +D GK+FIGG+SW T+ E LR+YF  YG++ EA++MKD TT R+RGFGFV FSDP +V +++ +  H +DG+ V+ K A PR     +              RT+KIFVGGL++  T  D K YF+QFG I D ++M+D  T R RGFGF+T+ SE+ VDKV    FHE+N KMVE K+A PKE+
Sbjct:   26 NDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHPKMVT------------RTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKEV 198

HSP 2 Score: 77.0258 bits (188), Expect = 5.949e-14
Identity = 38/95 (40.00%), Postives = 56/95 (58.95%), Query Frame = 1

Query:  280 GSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSP 564
            G    S  P    K+F+GGL+   +    + YF ++G I++ +VM D  T+R RGFGF+T+    +VDKVL +  HEL+GK V+ K A P+   P
Sbjct:   17 GPCSPSEVPNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHP 111

[Close]

BLAST of Vigun08g218000.2 vs. DB:Swiss
Match: DAZP1_HUMAN (DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.131e-53
Identity = 99/240 (41.25%), Postives = 140/240 (58.33%), Query Frame = 1

Query:   16 GKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDP-AVAEIVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGP--GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRTPLGGYNYGLSRVNSFLNGFTQGYSPSTVGGYGLRADGRFSPVANGRSGF 726
            GKLF+GG+ W T +E LR YFS YGEVV+ VIMKD+TT ++RGFGFV F DP  V  ++    H +DGR ++ K   PR  Q   +R        P     ++ KIFVGG+     E++ ++YF +FG +T+VV++YD   QRPRGFGFIT++ E++VD+ +   FH++ GK VEVKRA P++        P G   +G   V +  NG+     P+   GYG    G + P      G+
Sbjct:   10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQP-GASQWGSRVVPNAANGWAGQPPPTWQQGYG--PQGMWVPAGQAIGGY 246

HSP 2 Score: 73.9442 bits (180), Expect = 6.097e-13
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 1

Query:    7 SDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSD-PAVAEIVIKEKHNIDGRMVEAKKAVPRDDQN 261
            S + K+F+GGI  +  E  LREYF  +G V E V++ D    R RGFGF+ F D  +V + V    H+I G+ VE K+A PRD ++
Sbjct:  110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKS 195

[Close]

BLAST of Vigun08g218000.2 vs. DB:Swiss
Match: MSI2H_HUMAN (RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.199e-53
Identity = 101/245 (41.22%), Postives = 145/245 (59.18%), Query Frame = 1

Query:    4 QSDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEIVI-KEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELS-PGPSRTPLGGYNYGLSRVNSFLNGFTQGYSPSTVGGYGLRADGRFSPVANGRSGFAP 732
            Q D GK+FIGG+SW T+ + LR+YFS +GE+ E ++M+D TT R+RGFGFV F+DPA  + V+ +  H +D + ++ K A PR  Q  +              RT+KIFVGGL++     D K+YF+QFG + D ++M+D  T R RGFGF+T+++E+ V+KV    FHE+N KMVE K+A PKE+  P  +R    G  Y +   ++F+ G      P+ V  YG            G  GFAP
Sbjct:   17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTM---DAFMLGMGMLGYPNFVATYG-----------RGYPGFAP 235

[Close]

BLAST of Vigun08g218000.2 vs. DB:Swiss
Match: MSI2H_MOUSE (RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.428e-53
Identity = 86/186 (46.24%), Postives = 124/186 (66.67%), Query Frame = 1

Query:    4 QSDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEIVI-KEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKEL 558
            Q D GK+FIGG+SW T+ + LR+YFS +GE+ E ++M+D TT R+RGFGFV F+DPA  + V+ +  H +D + ++ K A PR  Q  +              RT+KIFVGGL++     D K+YF+QFG + D ++M+D  T R RGFGF+T+++E+ V+KV    FHE+N KMVE K+A PKE+
Sbjct:   17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEV 190

[Close]

BLAST of Vigun08g218000.2 vs. DB:Swiss
Match: DAZP1_MOUSE (DAZ-associated protein 1 OS=Mus musculus OX=10090 GN=Dazap1 PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 2.646e-53
Identity = 99/240 (41.25%), Postives = 140/240 (58.33%), Query Frame = 1

Query:   16 GKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDP-AVAEIVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSP--GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRTPLGGYNYGLSRVNSFLNGFTQGYSPSTVGGYGLRADGRFSPVANGRSGF 726
            GKLF+GG+ W T +E LR YFS YGEVV+ VIMKD+TT ++RGFGFV F DP  V  ++    H +DGR ++ K   PR  Q   +R        P     ++ KIFVGG+     E++ ++YF +FG +T+VV++YD   QRPRGFGFIT++ E++VD+ +   FH++ GK VEVKRA P++        P G   +G     S  NG+     P+   GYG +  G + P      G+
Sbjct:   10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQP-GASQWGSRVAPSAANGWAGQPPPTWQQGYGPQ--GMWVPAGQAIGGY 246

HSP 2 Score: 75.8702 bits (185), Expect = 1.373e-13
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 1

Query:    7 SDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSD-PAVAEIVIKEKHNIDGRMVEAKKAVPRDDQN 261
            S + K+F+GGI  +  E  LREYF  +G V E V++ D    R RGFGF+ F D  +V + V    H+I G+ VE K+A PRD +N
Sbjct:  110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKN 195

[Close]

BLAST of Vigun08g218000.2 vs. DB:Swiss
Match: RBP1_ARATH (RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.406e-51
Identity = 96/199 (48.24%), Postives = 133/199 (66.83%), Query Frame = 1

Query:    1 MQSDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEIVIKEKHNIDGRMVEAKKAVPRDD-------QNILSRNSGSIHG------SPG-PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 555
            M  D  KLF+GGI+ +T+EE L++YFS YG V+EAV+ K++ TG+ RGFGFV F++       +++ H I G+ V+ +KA+ + +          L R    ++G      S G   RT+KIFVGGL+S  TE +FK YF++FG  TDVVVM+D  T RPRGFGF+TYDSE++V+ V+   FHEL+ K VEVKRA+PKE
Sbjct:    1 MDYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPKE 199

[Close]

BLAST of Vigun08g218000.2 vs. DB:Swiss
Match: MSI1H_HUMAN (RNA-binding protein Musashi homolog 1 OS=Homo sapiens OX=9606 GN=MSI1 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.280e-50
Identity = 86/184 (46.74%), Postives = 120/184 (65.22%), Query Frame = 1

Query:   10 DNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPA-VAEIVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKEL 558
            D  K+FIGG+SW T +E LREYF  +GEV E ++M+D  T R+RGFGFV F D A V +++ + +H +D + ++ K A PR  Q  +              RT+KIFVGGL+   T  D K+YF+QFG + D ++M+D  T R RGFGF+T++SE+ V+KV    FHE+N KMVE K+A PKE+
Sbjct:   18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEV 189

HSP 2 Score: 79.7221 bits (195), Expect = 6.118e-15
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 1

Query:  304 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSP 564
            P    K+F+GGL+   T+   ++YF QFG + + +VM D  T+R RGFGF+T+  +  VDKVL ++ HEL+ K ++ K A P+   P
Sbjct:   16 PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQP 102

[Close]

BLAST of Vigun08g218000.2 vs. DB:Swiss
Match: MSI1H_MOUSE (RNA-binding protein Musashi homolog 1 OS=Mus musculus OX=10090 GN=Msi1 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.396e-50
Identity = 86/184 (46.74%), Postives = 119/184 (64.67%), Query Frame = 1

Query:   10 DNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPA-VAEIVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKEL 558
            D  K+FIGG+SW T +E LREYF  +GEV E ++M+D  T R+RGFGFV F D A V +++ + +H +D + ++ K A PR  Q  +              RT+KIFVGGL+   T  D K YF+QFG + D ++M+D  T R RGFGF+T++SE+ V+KV    FHE+N KMVE K+A PKE+
Sbjct:   18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT------------RTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEV 189

HSP 2 Score: 79.7221 bits (195), Expect = 6.346e-15
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 1

Query:  304 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSP 564
            P    K+F+GGL+   T+   ++YF QFG + + +VM D  T+R RGFGF+T+  +  VDKVL ++ HEL+ K ++ K A P+   P
Sbjct:   16 PHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQP 102

The following BLAST results are available for this feature:

BLAST of Vigun08g218000.2 vs. DB:Swiss

BLAST of Vigun08g218000.2 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 10

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
RNP1_ARATH	3.467e-72	55.21	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabi...	[more]
DAZP1_XENLA	4.243e-57	45.23	DAZ-associated protein 1 OS=Xenopus laevis OX=8355...	[more]
MSIR6_DROME	4.845e-54	49.73	RNA-binding protein Musashi homolog Rbp6 OS=Drosop...	[more]
DAZP1_HUMAN	2.131e-53	41.25	DAZ-associated protein 1 OS=Homo sapiens OX=9606 G...	[more]
MSI2H_HUMAN	2.199e-53	41.22	RNA-binding protein Musashi homolog 2 OS=Homo sapi...	[more]
MSI2H_MOUSE	2.428e-53	46.24	RNA-binding protein Musashi homolog 2 OS=Mus muscu...	[more]
DAZP1_MOUSE	2.646e-53	41.25	DAZ-associated protein 1 OS=Mus musculus OX=10090 ...	[more]
RBP1_ARATH	2.406e-51	48.24	RNA-binding protein 1 OS=Arabidopsis thaliana OX=3...	[more]
MSI1H_HUMAN	1.280e-50	46.74	RNA-binding protein Musashi homolog 1 OS=Homo sapi...	[more]
MSI1H_MOUSE	2.396e-50	46.74	RNA-binding protein Musashi homolog 1 OS=Mus muscu...	[more]

InterPro

Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 7..78 e-value: 5.6E-24 score: 95.7 coord: 107..179 e-value: 8.6E-24 score: 95.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 108..165 e-value: 9.5E-16 score: 57.4 coord: 8..69 e-value: 1.7E-15 score: 56.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 6..82 score: 17.541
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 106..183 score: 17.677
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..91 e-value: 8.8E-26 score: 92.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 103..181 e-value: 9.6E-26 score: 91.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 429..479
None	No IPR available	CDD	cd12325	RRM1_hnRNPA_hnRNPD_like	coord: 8..78 e-value: 8.07575E-37 score: 128.087
IPR034131	DAZ-associated protein 1, RNA recognition motif 2	CDD	cd12327	RRM2_DAZAP1	coord: 104..183 e-value: 4.33176E-47 score: 155.601
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 104..202
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 3..105

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Vu08:37785452..37790480+
coding sequence from alignment at Vu08:37785452..37790480+

mRNA sequence

>Vigun08g218000.2_Vu_IT97K-499-35_v1.1 ID=Vigun08g218000.2_Vu_IT97K-499-35_v1.1; Name=Vigun08g218000.2; organism=Vigna unguiculata; type=mRNA; length=2595bp
TCCTTCATTTGCAGAGGCCCTATATAATGGTCATACCACATCTCGCAGCT
TCTCTCTCGGCTTTCTCCTTATAAACTTCCGATGTGTTTTTCTCTTTCTC
TCTCCATAGTTTTGTTTTGTTTATAAAATTTTGCAATCGGTTTGGCAACT
GAATTTTCATTTGTTAATCAAATTATTAATAATTgaaaaagaagaagaag
aaaagaaAGGGTGGGGAGGCATAGCCAGATAATGAACCTGCCCTCTGTTC
TTATTCTCATTGTGCCTCCCCTCAGATCTTAAGATTTGCCATCTGGGTCG
TCTTCAATCGGATTGCTTAGCCTTTGATTCACTGCTTGATGATTGTTGAT
GAAGGATCCGATGTTTTGTAACTGAATCCGACAATATCTATTTTTGCATC
GTTAATACAGTCTCTCAGTTTGCCTTAATTTGAGATAAAATGCAATCAGA
TAATGGCAAGTTATTTATCGGTGGAATATCATGGGACACAAATGAGGAGC
GACTCAGGGAGTATTTCAGTACTTATGGGGAGGTTGTGGAAGCAGTGATA
ATGAAGGATCGGACAACAGGTAGAGCCAGAGGATTTGGTTTTGTTGTTTT
TTCCGACCCTGCTGTCGCTGAAATAGTCATAAAAGAGAAGCACAACATTG
ACGGAAGGATGGTTGAGGCAAAGAAAGCGGTTCCCAGGGATGATCAGAAC
ATACTGAGTAGAAACAGTGGCAGCATCCATGGTTCACCTGGTCCTGGTCG
CACTAGAAAGATATTTGTTGGAGGTTTAGCATCAACAGTGACGGAGAGTG
ATTTCAAAAAGTACTTTGATCAGTTTGGGACTATAACAGACGTTGTAGTT
ATGTATGATCACAACACTCAGAGACCAAGAGGTTTTGGATTTATCACGTA
TGATTCTGAGGAGGCTGTTGACAAGGTCTTACTAAAGACATTTCATGAAT
TGAACGGGAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAATTATCA
CCAGGACCAAGCCGCACCCCACTCGGTGGATATAACTATGGTCTTAGTAG
GGTCAATAGTTTCTTAAATGGCTTCACTCAGGGGTATAGTCCAAGTACTG
TTGGAGGCTATGGACTTCGAGCCGATGGTAGATTCAGTCCTGTTGCCAAT
GGTAGAAGTGGATTTGCTCCATTTGGATCAGGCTATGGAATGAGCATGAA
TTTTGAGCCTGGTTTGAATGCTGGATTTGGGGGGAATGCAAATTTCAACA
GCAATCTTAGCTACGGGCGGGGAGTAAATCCTTATTTTATTGGCAGCTCC
AATCGGTTTGGCAGTCCTGTTGGATTTGAAAGTGGCAATGGAGGAAACAA
TTCTTTCTTCAGTTCTGTGACTCGAAATTTGTGGGGTAATGGTGGCCTTA
GTTATGGAACAAATTCTGCAAATTCCAATGCGTACATTGGATCAGGGAGT
GGAAGTATTGGTGGGAATACATTTGGCAACACTGGAGTCAACTGGGGTGG
TTCTTCAGCAATTTCTGGGCAGGGAGGAGGGAACAACATGTCACAAAGTA
GTGGCAACCTGGGATATGGAAGTGGTGACAATAATTATGGCTTGGGGACT
GGAGGGTATGGAAGAAACACTGGTACCACTTTTGCACCAACATCTTCGTA
CTCTGCATCAAATGGTGGTGTTGATGGGGCTTTTGCAGACTTTTACAATA
ATAGTTCTGTTTATGGAGACCCCACTTGGCGCTCTTCAAATTCTGAGAGA
GATGGATCTGGTCCCTTCGGTTATGGACTTGGTGGAGCAGCTTCTGATGT
TTCTACCAAGAGTTCTCCAGGTTATGTTGGTGGTTATACTGTTAATAAGA
GGCAGCCAAATAGGGGAATCGCGACATAGGAAGATCATTTTGATGACACG
AACTTGTAGGTGAAGATAATCCAGTGAAGCAGGTGAATTGTGAATTTTGC
ACACCACTGTTGTTACTGTATTTGGGTTTAAGACGCAAGATGTTTGGTTT
TCTAGAGCTAACTGGAGTACCTGTTTTGAGGGTTCAGATATAGAGATAGA
TTTCAAGGGAATGTTAAGGCTTGAGTTTTTTGAGTTACTGTTTAGGTTTT
GGGATTTGAGTGAGATGTAAAATCTGATTGCGGGATATAGCGGAAGTGTA
TCATGCACCACTTGTGAGGCAGCAATATAAAAAGATGGACAGCATTTTTT
TTCATTTTCCTTTTTTTTGGGGTAGATTTTTTTGTCTTTGATGTCTTGCA
AAAGTTGTGGCTTCGTTCTTCTCAGGAATTGTTTGTTTCTTCATCCATCA
TTTTGGTTTGCTTTTAGCAGATTGTATCTGAGGTTTTTTTTTTTTCTCTT
ATTACTAGTGTGAAACATTGAAGGGATACCCATCTAGGGTCCCGTGAATA
AGTTACCATATGCTCTGATTCTTTTTCTAAAGGGGAATATTTTATGCTAC
ACATTCTAGCTGCTAAATCTCATAAATGGATTTCTATTTCCCTATTTTCC
AACTTTTATCCCACTGCTGTTTTTAGCATAGGTAGATCGTTTAAGATTGA
GTTGTACAAATTGTAAGCATCACTAATAAAGCAATACATTGAATG

protein sequence of Vigun08g218000.2_Vu_IT97K-499-35_v1.1

>Vigun08g218000.2_Vu_IT97K-499-35_v1.1 ID=Vigun08g218000.2_Vu_IT97K-499-35_v1.1; Name=Vigun08g218000.2_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=480bp
MQSDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFG
FVVFSDPAVAEIVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSP
GPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFG
FITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRTPLGGYNY
GLSRVNSFLNGFTQGYSPSTVGGYGLRADGRFSPVANGRSGFAPFGSGYG
MSMNFEPGLNAGFGGNANFNSNLSYGRGVNPYFIGSSNRFGSPVGFESGN
GGNNSFFSSVTRNLWGNGGLSYGTNSANSNAYIGSGSGSIGGNTFGNTGV
NWGGSSAISGQGGGNNMSQSSGNLGYGSGDNNYGLGTGGYGRNTGTTFAP
TSSYSASNGGVDGAFADFYNNSSVYGDPTWRSSNSERDGSGPFGYGLGGA
ASDVSTKSSPGYVGGYTVNKRQPNRGIAT*

mRNA from alignment at Vu08:37785452..37790480+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Vigun08g218000.2_Vu_IT97K-499-35_v1.1 ID=Vigun08g218000.2_Vu_IT97K-499-35_v1.1; Name=Vigun08g218000.2; organism=Vigna unguiculata; type=mRNA; length=5029bp; location=Sequence derived from: Vu08:37785452..37790480+ (Vigna unguiculata
TCCTTCATTTGCAGAGGCCCTATATAATGGTCATACCACATCTCGCAGCT
TCTCTCTCGGCTTTCTCCTTATAAACTTCCGATGTGTTTTTCTCTTTCTC
TCTCCATAGTTTTGTTTTGTTTATAAAATTTTGCAATCGGTTTGGCAACT
GAATTTTCATTTGTTAATCAAATTATTAATAATTGAAAAAGAAGAAGAAG
AAAAGAAAGGGTGGGGAGGCATAGCCAGATAATGAACCTGCCCTCTGTTC
TTATTCTCATTGTGCCTCCCCTCAGATCTTAAGATTTGCCATCTGGGTCG
TCTTCAATCGGTGGGTTTCGAAGGAATCTCGATTGAAGTTTTGATCTTTC
TTCAATTGGGTCTGCCTTTGGATCTTTGATTATTGAAAATTTTTGTGGGT
TTTTTTTTTTTTTTTCCAGGATTGCTTAGCCTTTGATTCACTGCTTGATG
ATTGTTGATGAAGGATCCGATGTTTTGTAACTGAATCCGACAATATCTAT
TTTTGCATCGTTAATACAGTCTCTCAGTTTGCCTTAATTTGAGGTATTGT
TTGTAATGCTTCTTTTTTTGTTATGCTAGGGACTATTTGTTTTTGAACAA
TTTGATAAACGATAATGCTATCACACTTTGATTTTATCCTACCCGGATTT
ATTTGCATTTCATCCCAGACTAGGATTCTTTTGTATTTTGTTTTGTGAGT
AAAAAAAAAAGAAATAAAGTTATGCTTTTGCCTATTGTTGTGTATGGGAT
TGGATTGGATTGGATCCGTCAAGAACATGCCTTACTTTTCTTATACCTTA
TTGTTAGGTGCTAAAAAGGGTTGCTTTGTCCATTTTCAATGCTGCTGCTT
CCACTTGCATTTGTATGTTTTTTAGGTGAAATGCTTATTGGATGAAGCGT
CTTTTTGCTTGTAGATAAAATGCAATCAGATAATGGCAAGTTATTTATCG
GTGGAATATCATGGGACACAAATGAGGAGCGACTCAGGGAGTATTTCAGT
ACTTATGGGGAGGTTGTGGAAGCAGTGATAATGAAGGATCGGACAACAGG
TAGAGCCAGAGGATTTGGTTTTGTTGTTTTTTCCGACCCTGCTGTCGCTG
AAATAGTCATAAAAGAGAAGCACAACATTGACGGAAGGATGGTAATTCTT
GTTATTTTCCCCTCTTAAGTCTAAAACTTGCATTTTGAGATGATTCACTT
TTTGAATTATGAAACATCGAAAGGTAGCGTGTTTTTTTTTATTGAAATGT
ACACTGATTTGCTAAATTTTGCTGGATTCGCAATCTCAAAAATTTCTTAG
CAAGATTTTAAAATGGAGCAGTAGTTAAATCTTTTTTTTTTTTTTCTTTG
TTATTGTTCCCTTCTCCATGCATCTGTTGTAAGGATTATATGCATCTGTT
GTAAGGATTATAGATCTTCAACACTTTTTTATTTTCTGATCTATGGTCAT
CTTCAATACTGTTTCTTCTATCGCTAGGTTGAGGCAAAGAAAGCGGTTCC
CAGGGATGATCAGAACATACTGAGTAGAAACAGTGGCAGCATCCATGGTT
CACCTGGTCCTGGTCGCACTAGAAAGATATTTGTTGGAGGTTTAGCATCA
ACAGTGACGGAGAGTGATTTCAAAAAGTACTTTGATCAGTTTGGGACTAT
AACAGACGTTGTAGTTATGTATGATCACAACACTCAGAGACCAAGAGGTT
TTGGATTTATCACGTATGATTCTGAGGAGGCTGTTGACAAGGTCTTACTA
AAGACATTTCATGAATTGAACGGGAAAATGGTTGAGGTCAAGCGAGCAGT
TCCTAAGGAATTATCACCAGGACCAAGCCGCACCCCACTCGGTGGATATA
ACTATGGTCTTAGTAGGGTCAATAGTTTCTTAAATGGCTTCACTCAGGGG
TATAGTCCAAGTACTGTTGGAGGCTATGGACTTCGAGCCGATGGTAGATT
CAGTCCTGTTGCCAATGGTAGAAGTGGATTTGCTCCATTTGGATCAGGCT
ATGGAATGAGCATGAATTTTGAGCCTGGTTTGAATGCTGGATTTGGGGGG
AATGCAAATTTCAACAGCAATCTTAGCTACGGGCGGGGAGTAAATCCTTA
TTTTATTGGCAGCTCCAATCGGTTTGGCAGTCCTGTTGGATTTGAAAGTG
GCAATGGAGGAAACAATTCTTTCTTCAGTTCTGTGACTCGAAATTTGTGG
GGTAATGGTGGCCTTAGTTATGGAACAAATTCTGCAAATTCCAATGCGTA
CATTGGATCAGGGAGTGGAAGTATTGGTGGGAATACATTTGGCAACACTG
GAGTCAACTGGGGTGGTTCTTCAGCAATTTCTGGGCAGGGAGGAGGGAAC
AACATGTCACAAAGTAGTGGCAACCTGGGATATGGAAGTGGTGACAATAA
TTATGGCTTGGGGACTGGAGGGTATGGAAGAAACACTGGTACCACTTTTG
CACCAACATCTTCGTACTCTGCATCAAATGGTGGTGTTGATGGGGCTTTT
GCAGACTTTTACAATAATAGTTCTGTTTATGGAGACCCCACTTGGCGCTC
TTCAAATTCTGAGAGAGATGGATCTGGTCCCTTCGGTTATGGACTTGGTG
GAGCAGCTTCTGATGTTTCTACCAAGAGTTCTCCAGGTTATGTTGGTGGT
TATACTGTTAATAAGAGGCAGCCAAATAGGGGTAAGACTTACAATTTTTT
TTGACGATTTTCTTATTGATATGCTTGGATTTTTAGTGAATGTCAGTACC
TTATGTAATTGATCTTTGATTAATGTATTTTTTCTTTGCTAAGTTTGCTA
TTACTATGATGGAACACTAATTAGTTCTTTGTCTATTTTTCAACTAGATT
TTGTTGCTTTTCTCTTTTACTTAGATTTATACAGTTAACTTGTTTCTTAG
AACAGTTTTTAATGACATCCAATGACGACCATTATTTTATTGTTCTGTGT
CATAAAAGGGGTCCTTTTGATCAGGAAAAACTAACTAGCCTAGAGAAGAG
GGTTACAACCCAAAGTGAGAGGGCATGTCGTAATGGAAAAGTTTTATTAG
GTTTGTTTAGGGAACTTATAATTTTATTTAGATTCCCACGAATGTAGGCA
AGAGTTGTTGAACTACGTAAAATTTGTGCCTTTTGCTATTTTTCTGTGGT
CTTTATTGTGTGTGAAAGGGATTTCCCCAACATATTTATATGGTTTTTTA
TCCAAGTCTTGTAGGAAATATAACTTTTAGGCTATGAAAACCGAGAGGTC
CCATACGTATAGGAATGTAAGCTTCAAACGAAAAGATGGCTATTACGGAA
ACAAGTAATGTTAAGCTTCATAGAAATATGCATATGGTTGTCATTATTCC
CCAATCTGACTTTTTATTAGCATTACATGGCCACAATCTGAAATTTTTAT
CCATTGCTTGGGTCAGTGATGTCAGACTTTTTAATAATTTTTTTTTTAAA
CTAAAGCCTTACTTCAATTGCGATCAGAATTTGTTGCTGAACAGTATAAC
TCCATAAATGCGAGAGATGATCACTAATGGCTAATGTCTAATTTCATATT
TTCTTTCAAAATAAACAGTCTGGTATGGACTCTAGGATTCAACATCTGTA
TGGTTGAGGGCTGTATTTGTGAGTTAACAGTTGGTTAAAAAAAGTTTTAA
ACATGTTGACCATAATTCCACCGAAATGTTAGAAACTATCATTTTTCATA
TATATATATATATATAGAAACACACAGAGATATAGGTAGATAGACATGAA
ACATTTCGGCTTCATGTTTCATGTCTGTCTTTCGCAAAACTTGAGACCAG
GTTAAGAAAACTGTTTTTTAGATAGAAGTCATAGATGTCATGTTAAACAT
CAGACCAGAACTAGTTCTTCAGTGTCCTTTTTCTTCTGAGTTGTAAGACT
GATTTTGAATGTTTTTGCTGAATGTGTTTAGATCTTAAGAGTATGCAATC
ACGACTCTAAATATTATGTTGCGTGCAATACATTTTCATGTGGGAATTTA
ATCTCCTGTTGTCTGTTATTATTCTGGTGTTTAATAGTTAGTCGAGAATA
TGTTGAACATTATTTTTCTTTTCGTTACATAATACTTTGTTCAATTTTCT
TCCGACTTATGTTCTCCATTTCTCAAGTCTTGGTAAGTATAACTCAGAAG
TGCAAGAGCTGATATGAATTTGTCTTTGAGTAAAACTTGGTCACATGTTC
CTTTGTAGTGCTCCATTGTTTTCATGTTACTTGTGATGTGTCCTTTCAAT
AATTAATTTTGTATTCAAAGACTGATAAAGTTGTATGTTTTTGGTTCAGG
AATCGCGACATAGGAAGATCATTTTGATGACACGAACTTGTAGGTGAAGA
TAATCCAGTGAAGCAGGTGAATTGTGAATTTTGCACACCACTGTTGTTAC
TGTATTTGGGTTTAAGACGCAAGATGTTTGGTTTTCTAGAGCTAACTGGA
GTACCTGTTTTGAGGGTTCAGATATAGAGATAGATTTCAAGGGAATGTTA
AGGCTTGAGTTTTTTGAGTTACTGTTTAGGTTTTGGGATTTGAGTGAGAT
GTAAAATCTGATTGCGGGATATAGCGGAAGTGTATCATGCACCACTTGTG
AGGCAGCAATATAAAAAGATGGACAGCATTTTTTTTCATTTTCCTTTTTT
TTGGGGTAGATTTTTTTGTCTTTGATGTCTTGCAAAAGTTGTGGCTTCGT
TCTTCTCAGGAATTGTTTGTTTCTTCATCCATCATTTTGGTTTGCTTTTA
GCAGATTGTATCTGAGGTTTTTTTTTTTTCTCTTATTACTAGTGTGAAAC
ATTGAAGGGATACCCATCTAGGGTCCCGTGAATAAGTTACCATATGCTCT
GATTCTTTTTCTAAAGGGGAATATTTTATGCTACACATTCTAGCTGCTAA
ATCTCATAAATGGATTTCTATTTCCCTATTTTCCAACTTTTATCCCACTG
CTGTTTTTAGCATAGGTAGATCGTTTAAGATTGAGTTGTACAAATTGTAA
GCATCACTAATAAAGCAATACATTGAATG

Coding sequence (CDS) from alignment at Vu08:37785452..37790480+

>Vigun08g218000.2_Vu_IT97K-499-35_v1.1 ID=Vigun08g218000.2_Vu_IT97K-499-35_v1.1; Name=Vigun08g218000.2; organism=Vigna unguiculata; type=CDS; length=1440bp; location=Sequence derived from: Vu08:37785452..37790480+ (Vigna unguiculata
ATGCAATCAGATAATGGCAAGTTATTTATCGGTGGAATATCATGGGACAC
AAATGAGGAGCGACTCAGGGAGTATTTCAGTACTTATGGGGAGGTTGTGG
AAGCAGTGATAATGAAGGATCGGACAACAGGTAGAGCCAGAGGATTTGGT
TTTGTTGTTTTTTCCGACCCTGCTGTCGCTGAAATAGTCATAAAAGAGAA
GCACAACATTGACGGAAGGATGGTTGAGGCAAAGAAAGCGGTTCCCAGGG
ATGATCAGAACATACTGAGTAGAAACAGTGGCAGCATCCATGGTTCACCT
GGTCCTGGTCGCACTAGAAAGATATTTGTTGGAGGTTTAGCATCAACAGT
GACGGAGAGTGATTTCAAAAAGTACTTTGATCAGTTTGGGACTATAACAG
ACGTTGTAGTTATGTATGATCACAACACTCAGAGACCAAGAGGTTTTGGA
TTTATCACGTATGATTCTGAGGAGGCTGTTGACAAGGTCTTACTAAAGAC
ATTTCATGAATTGAACGGGAAAATGGTTGAGGTCAAGCGAGCAGTTCCTA
AGGAATTATCACCAGGACCAAGCCGCACCCCACTCGGTGGATATAACTAT
GGTCTTAGTAGGGTCAATAGTTTCTTAAATGGCTTCACTCAGGGGTATAG
TCCAAGTACTGTTGGAGGCTATGGACTTCGAGCCGATGGTAGATTCAGTC
CTGTTGCCAATGGTAGAAGTGGATTTGCTCCATTTGGATCAGGCTATGGA
ATGAGCATGAATTTTGAGCCTGGTTTGAATGCTGGATTTGGGGGGAATGC
AAATTTCAACAGCAATCTTAGCTACGGGCGGGGAGTAAATCCTTATTTTA
TTGGCAGCTCCAATCGGTTTGGCAGTCCTGTTGGATTTGAAAGTGGCAAT
GGAGGAAACAATTCTTTCTTCAGTTCTGTGACTCGAAATTTGTGGGGTAA
TGGTGGCCTTAGTTATGGAACAAATTCTGCAAATTCCAATGCGTACATTG
GATCAGGGAGTGGAAGTATTGGTGGGAATACATTTGGCAACACTGGAGTC
AACTGGGGTGGTTCTTCAGCAATTTCTGGGCAGGGAGGAGGGAACAACAT
GTCACAAAGTAGTGGCAACCTGGGATATGGAAGTGGTGACAATAATTATG
GCTTGGGGACTGGAGGGTATGGAAGAAACACTGGTACCACTTTTGCACCA
ACATCTTCGTACTCTGCATCAAATGGTGGTGTTGATGGGGCTTTTGCAGA
CTTTTACAATAATAGTTCTGTTTATGGAGACCCCACTTGGCGCTCTTCAA
ATTCTGAGAGAGATGGATCTGGTCCCTTCGGTTATGGACTTGGTGGAGCA
GCTTCTGATGTTTCTACCAAGAGTTCTCCAGGTTATGTTGGTGGTTATAC
TGTTAATAAGAGGCAGCCAAATAGGGGAATCGCGACATAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR034131	DAZAP1_RRM2
IPR035979	RBD_domain_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0003723	RNA binding

Search form

Vigun08g218000.2