Vigun08g220400.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun08g220400.1 vs. DB:Swiss
Match: FLA2_ARATH (Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=2 SV=1) HSP 1 Score: 399.053 bits (1024), Expect = 2.479e-136 Identity = 212/393 (53.94%), Postives = 285/393 (72.52%), Query Frame = 1 Query: 52 AVNGAHNITHILEKHPGFSTFNHYLTVTHLADEINRRQTITVLAIDNGAMNTLLDKHLTLPTLKNVLSLHVLVDYFGAKKLHQINNSTTLVSSMFQATGAAAGTSGYVNITNLKGGKVGFAAEDNDGALHSFFVKSLQEFPYYISVLQISNPXXXXXXXXXXXXXXXXXLISIMSKQGCKAFADILRGSKALPAFQESIDGGLTVFCPTDSAVNGFAPKYKNLTDSQKVSLLLYHGVPLYESLQMLKSGNGPMNTLATEGANKYDFTVQTEGEDVSLKTKVNTVSIIGTLIDQDPFVAYKINKVLMPRELFKASDVVDDAPAESXXXXXXXXXXXXQDSTAADAPADGPSSE--SDDQKAADEDSNNGVSLLHGGVRLVSAALFCVSVGFLVL 1224 +++ AHNIT IL K P FSTFNHYL+ THLADEINRRQTITVLA+DN AM+++L +L ++N+LSLHVLVDYFG KKLHQI + +T +SMFQ+TG+A GTSGY+NIT++KGGKV F +D+D L + +VKS+ E PY ISVL IS ++S +AEAPTA+PS + L +I+ KQGCKAF+DIL+ + A FQ+++DGGLTVFCP+DSAV F PK+K+L+ + K +L+LYHG+P+Y+SLQML+SGNG +NTLATEG NK+DFTVQ +GEDV+L+T V T ++GTL DQ+P + YKI+KVL+PRE++KA K + K + A+A ADGPS++ SDD +D N VS + V A+ + G ++ Sbjct: 22 SLSNAHNITRILAKDPDFSTFNHYLSATHLADEINRRQTITVLAVDNSAMSSILSNGYSLYQIRNILSLHVLVDYFGTKKLHQITDGSTSTASMFQSTGSATGTSGYINITDIKGGKVAFGVQDDDSKLTAHYVKSVFEKPYNISVLHISQVLTSPEAEAPTASPSDLILTTILEKQGCKAFSDILKSTGADKTFQDTVDGGLTVFCPSDSAVGKFMPKFKSLSPANKTALVLYHGMPVYQSLQMLRSGNGAVNTLATEGNNKFDFTVQNDGEDVTLETDVVTAKVMGTLKDQEPLIVYKIDKVLLPREIYKA-----------VKTSAPAPKSSKKKPKNAEADADGPSADAPSDDDVEVADDKNGAVSAMITRTSNVVTAIVGLCFGVWLM 403
BLAST of Vigun08g220400.1 vs. DB:Swiss
Match: FLA1_ARATH (Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=FLA1 PE=1 SV=1) HSP 1 Score: 362.844 bits (930), Expect = 8.797e-122 Identity = 201/365 (55.07%), Postives = 256/365 (70.14%), Query Frame = 1 Query: 64 AHNITHILEKHPGFSTFNHYLTVTHLADEINRRQTITVLAIDNGAMNTLLDKHLTLPTLKNVLSLHVLVDYFGAKKLHQINNSTTLVSSMFQATGAAAGTSGYVNITNLKGGKVGFAAEDNDGALHSFFVKSLQEFPYYISVLQISNPXXXXXXXXXXXXXXXXXLISIMSKQGCKAFAD-ILRGSKALPAFQESIDGGLTVFCPTDSAVNGFAPKYKNLTDSQKVSLLLYHGVPLYESLQMLKSGNGPMNTLATEGANKYDFTVQTEGEDVSLKTKVNTVSIIGTLIDQDPFVAYKINKVLMPRELFKASDV-------------VDDAPAESXXXXXXXXXXXXQDSTA-----ADAPADGPS 1101 AHN+T +L HP FS+F+H+LT THLADEINRR+TITV A+DN AM+ L K TL TLKN+LSLHVL+DYFG KKLHQI + + L +++FQATGAA GTSG+VNIT+L+GGKVGF + D L SFFVKS++E PY IS++QIS + S A APT AP+ ++L IMS GCK FA+ +L A +QES++GG+TVFCP D A+ GF PKYKNLT +K + L + VP Y S+ MLKS NGPMNTLAT+GANK++ TVQ +GE V+LKT++NTV I+ TLID+ P Y +KVL+P+ELFKAS V V D+P + AK K KK A +D+PA+GP Sbjct: 24 AHNVTRLLANHPSFSSFSHFLTQTHLADEINRRRTITVCAVDNAAMSALTSKGYTLSTLKNILSLHVLLDYFGTKKLHQIRDGSALAATLFQATGAAPGTSGFVNITDLRGGKVGFGPDGGD--LSSFFVKSIEEVPYNISIIQISRVLPSETAAAPTPAPAEMNLTGIMSAHGCKVFAETLLTNPGASKTYQESLEGGMTVFCPGDDAMKGFLPKYKNLTAPKKEAFLDFLAVPTYYSMAMLKSNNGPMNTLATDGANKFELTVQNDGEKVTLKTRINTVKIVDTLIDEQPLAIYATDKVLLPKELFKASAVEAPAPAPAPEDGDVADSPKAAKGKAKGKKKKAAPSPDNDPFGDSDSPAEGPD 386
BLAST of Vigun08g220400.1 vs. DB:Swiss
Match: FLA8_ARATH (Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana OX=3702 GN=FLA8 PE=2 SV=1) HSP 1 Score: 250.751 bits (639), Expect = 4.901e-78 Identity = 154/398 (38.69%), Postives = 226/398 (56.78%), Query Frame = 1 Query: 64 AHNITHILEKHPGFSTFNHYLTVTHLADEINRRQTITVLAIDNGAMNTLLDKHLTLPTLKNVLSLHVLVDYFGAKKLHQINNSTTLVSSMFQATGAAAGTSGYVNITNLKGGKVGFAAEDNDGALHSFFVKSLQEFPYYISVLQISNPXXXXXXXXXXXXXXXXXLIS-IMSKQGCKAFADILRGSKALPAFQESIDGGLTVFCPTDSAVNGFA-PKYKNLTDSQKVSLLLYHGVPLYESLQMLKSGNGPMNTLATEGANKYDFTVQTEGEDVSLKTKVNTVSIIGTLIDQDPFVAYKINKVLMPRELFKASDVV------------DDAPAESXXXXXXXXXXXXQDSTAADAPADGPSSESDDQKAADEDSNNGVSLLHGGVRLVSAALFCVSVGF 1215 +HNIT IL P +S+FN YL+ T LADEIN R TITVL ++NGAM+ L KH L +K+ LSL VL+DY+ +KLH+I+ TTL ++++Q TG A G G+VNIT+LKGGKVGF + + L S + KS+++ PY IS+L+I PI + A +++ I+ ++ K GCK FA++L S L ++ +++ GLTVF P+D A P LT ++ VSLL YH + Y+ LK+ ++TLAT GA K+D T T G++V L T V + T++D P V + ++ VL+P ELF S +PA++P P D + AP+D P+ ++ + A ++ GVS LV+ A VSV Sbjct: 25 SHNITQILADSPDYSSFNSYLSQTKLADEINSRTTITVLVLNNGAMSALAGKH-PLSVIKSALSLLVLLDYYDPQKLHKISKGTTLSTTLYQTTGNAPGNLGFVNITDLKGGKVGFGSAASGSKLDSSYTKSVKQIPYNISILEIDAPIIAPGVLTAPAPSASLSNITGLLEKAGCKTFANLLVSSGVLKTYESAVEKGLTVFAPSDEAFKAEGVPDLTKLTQAEVVSLLEYHALAEYKPKGSLKTNKNNISTLATNGAGKFDLTTSTSGDEVILHTGVAPSRLADTVLDATPVVIFTVDNVLLPAELFGKSKSPSPAPAPEPVTAPTPSPADAPSPTAASPPAPPTDESPESAPSDSPTGSANSKSA---NAAVGVSTPSLFTALVTIAAIAVSVSL 418
BLAST of Vigun08g220400.1 vs. DB:Swiss
Match: FLA10_ARATH (Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana OX=3702 GN=FLA10 PE=2 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 1.474e-73 Identity = 141/326 (43.25%), Postives = 202/326 (61.96%), Query Frame = 1 Query: 46 SSAVNGAHNITHILEKHPGFSTFNHYLTVTHLADEINRRQTITVLAIDNGAMNTLLDKHLTLPTLKNVLSLHVLVDYFGAKKLHQINNSTTLVSSMFQATGAAAGTSGYVNITNLKGGKVGFAAEDNDGALHSFFVKSLQEFPYYISVLQISNPXXXX--XXXXXXXXXXXXXLISIMSKQGCKAFADILRGSKALPAFQESIDGGLTVFCPTDSAVNGFA-PKYKNLTDSQKVSLLLYHGVPLYESLQMLKSGNGPMNTLATEGANKYDFTVQTEGEDVSLKTKVNTVSIIGTLIDQDPFVAYKINKVLMPRELFKASDVVDDAP 1014 +S V+G HNIT IL P +S+FN+YL+ T LADEIN R TITVL ++NGAM++L KH L +KN LSL VL+DY+ KLHQ++ TTL ++++Q TG A G G+VN+T+LKGGKVGF + L S + KS+++ PY ISVL+I+ PI + ++ ++ ++ K GCK FA++L S + F+ +++ GLTVF P+D A P NLT ++ VSLL YH + Y+ LK+ ++TLAT GA KYD T T G++V L T V + T++D+ P V + ++ VL+P ELF S AP Sbjct: 20 ASTVSG-HNITQILSDTPEYSSFNNYLSQTKLADEINSRTTITVLVLNNGAMSSLAGKH-PLSVVKNALSLLVLLDYYDPLKLHQLSKGTTLTTTLYQTTGHALGNLGFVNVTDLKGGKVGFGSAAPGSKLDSSYTKSVKQIPYNISVLEINAPIIAPGILTAPAPSSAGVSNITGLLEKAGCKTFANLLVSSGVIKTFESTVEKGLTVFAPSDEAFKARGVPDLTNLTQAEVVSLLEYHALAEYKPKGSLKTNKDAISTLATNGAGKYDLTTSTSGDEVILHTGVGPSRLADTVVDETPVVIFTVDNVLLPAELFGKSSSPAPAP 343
BLAST of Vigun08g220400.1 vs. DB:Swiss
Match: FLA14_ARATH (Fasciclin-like arabinogalactan protein 14 OS=Arabidopsis thaliana OX=3702 GN=FLA14 PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 5.557e-29 Identity = 59/146 (40.41%), Postives = 94/146 (64.38%), Query Frame = 1 Query: 64 AHNITHILEKHPGFSTFNHYLTVTHLADEINRRQTITVLAIDNGAMNTLLDKHLTLPTLKNVLSLHVLVDYFGAKKLHQINNSTTLVSSMFQATGAAAGTSGYVNITNLKGGKVGFAAEDNDGALHSFFVKSLQEFPYYISVLQIS 501 + NIT+IL +H FS FN L+ T LA IN+RQTITVL + NGA+++L + ++ +K +LSLH+++DY+ KKL ++ T L++++FQ++G A G G++N T +K G V F + +L + ++ P+ ISVL IS Sbjct: 23 SFNITNILNEHDDFSNFNQLLSETQLASTINKRQTITVLVVSNGALSSLSGQPTSV--IKKILSLHIVLDYYDQKKLKNLSKKTVLLTTLFQSSGLARGQQGFLNATVMKNGDVAFGSAVPGSSLDAQLQDTVAALPFNISVLHIS 166
BLAST of Vigun08g220400.1 vs. DB:Swiss
Match: FLA3_ARATH (Fasciclin-like arabinogalactan protein 3 OS=Arabidopsis thaliana OX=3702 GN=FLA3 PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 5.885e-23 Identity = 56/153 (36.60%), Postives = 91/153 (59.48%), Query Frame = 1 Query: 49 SAVNGAHNITHILEKHPGFSTFNHYLTVTHLADEINRRQTITVLAIDNGAMNTLLDKHLTLPTLKNVLSLHVLVDYFGAKKLHQINNSTTLVSSMFQATGAAAGTSGYVNITNLKGGKVGFAAEDNDGALHSFFVKSLQEFPYYISVLQISNP 507 S++ A NIT +LEK+P FST L T L IN+RQTITVLA++N A+ ++ + +KN+L HV++DYF KL + +TL+++++Q+TG +G++N T GK+ F + + ++ ++ PY +SV+QIS P Sbjct: 19 SSIVSAVNITRVLEKYPEFSTMTELLAKTELTPIINKRQTITVLALNNDAIGSISGRPEE--EVKNILMNHVVLDYFDELKLKALKEKSTLLTTLYQSTGLGQQQNGFLNCTK-SNGKIYFGSGVKGAPQTAEYITTVFRNPYNLSVVQISMP 168
BLAST of Vigun08g220400.1 vs. DB:Swiss
Match: FLA4_ARATH (Fasciclin-like arabinogalactan protein 4 OS=Arabidopsis thaliana OX=3702 GN=FLA4 PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.423e-20 Identity = 96/349 (27.51%), Postives = 161/349 (46.13%), Query Frame = 1 Query: 70 NITHILEKHPGFSTFNHYLTVTHLADEINRRQTITVLAIDNGAMNTL---LDKHLTLPTLKNVLSLHVLVDYFGAKKLHQINNSTTLVSSMFQATGAAAGTSGYVNITNLKGG---KVGFAAEDNDGALHSFFVKSLQEFPYYISVLQISN------------------PXXXXXXXXXXXXXXXXXLISIMSKQGCKAFADILRGSKALPAFQESIDG-GLTVFCPTDSAVNGFAPK--YKNLTDSQKVSLLLYHGVPLYESLQMLKSGNGPMN-TLATE--GANKYDFTV-QTEGEDVSLKTKVNTVSIIGTLIDQDPFVAYKINKVLMPRELF-KASDVVDDAPAE 1020 N+T +L P S+F++ L + +A E++ R ++T+LA+ N ++ L + L L ++L HVL+ + L +I S + V+++++A+G SG VN+T +G A N L K L+ P I+VL + + P S++ + P LI+ +L S + F+ G G+TVF PTDSA + ++L QK +L +H + Y +L L+S P+ TLATE GA Y + + G V++ + V + T DQ+P + ++KVL+P+ELF K+ V AP + Sbjct: 30 NVTAVLSSFPNLSSFSNLLVSSGIAAELSGRNSLTLLAVPNSQFSSASLDLTRRLPPSALADLLRFHVLLQFLSDSDLRRIPPSGSAVTTLYEASGRTFFGSGSVNVTRDPASGSVTIGSPATKNVTVL-----KLLETKPPNITVLTVDSLIVPTGIDITASETLTPPPTSTSLSPPPAGINLTQILIN---GHNFNVALSLLVASGVITEFENDERGAGITVFVPTDSAFSDLPSNVNLQSLPAEQKAFVLKFHVLHSYYTLGSLESITNPVQPTLATEEMGAGSYTLNISRVNGSIVTINSGVVLAVVTQTAFDQNPVSVFGVSKVLLPKELFPKSGQPVATAPPQ 370
BLAST of Vigun08g220400.1 vs. DB:Swiss
Match: FLA5_ARATH (Fasciclin-like arabinogalactan protein 5 OS=Arabidopsis thaliana OX=3702 GN=FLA5 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 9.394e-20 Identity = 49/153 (32.03%), Postives = 91/153 (59.48%), Query Frame = 1 Query: 49 SAVNGAHNITHILEKHPGFSTFNHYLTVTHLADEINRRQTITVLAIDNGAMNTLLDKHLTLPTLKNVLSLHVLVDYFGAKKLHQINNSTTLVSSMFQATGAAAGTSGYVNITNLKGGKVGFAAEDNDGALHSFFVKSLQEFPYYISVLQISNP 507 S V A+NIT +K+ FST T L I++ QTITVLA+ N A++++ ++ L+N+L HV++DY+ KL + + ++++++Q TG +G++N++ K G+V F +E + L++ +V ++ PY +S++QI+ P Sbjct: 19 SKVVTANNITLAFQKYSKFSTMRDLFIKTKLIAAIDKYQTITVLAVSNDAISSITNRSEV--ELRNILMTHVILDYYDELKLQGMREKSIMLTTLYQTTGLGEQMNGFLNVSKSK-GRVYFGSEVKNSPLNAEYVSTVYHNPYNLSIIQITMP 168
BLAST of Vigun08g220400.1 vs. DB:Swiss
Match: FLA6_ARATH (Fasciclin-like arabinogalactan protein 6 OS=Arabidopsis thaliana OX=3702 GN=FLA6 PE=2 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 1.797e-15 Identity = 68/196 (34.69%), Postives = 93/196 (47.45%), Query Frame = 1 Query: 643 SIDGGLTVFCPTDSAVNGFAPKYKN-LTDSQKVSLLLYHGVPLYESLQMLKSGNGPMNTLATE---GANKYDFTVQTEGEDVSLKTKVNTVSIIGTLIDQDPFVAYKINKVLMPRELFKASDVVDDAPAESXXXXXXXXXXXXQDSTAADAPADGPSSESDDQKAADEDSNNGVSLLHGGVRLVSAALFCVSVGFL 1218 S D G+T+F PTD+A N P N LT Q++ L+LYH +P Y SL L + P+ T AT G +FT Q + V++ T V I L Q P Y ++ VL+P ELF APA S+ AD+PA +DD+ + S SL G+ +VS ALFC SV ++ Sbjct: 71 SSDQGMTIFAPTDNAFNKLKPGTLNSLTYQQQIQLMLYHIIPKYYSLSDLLLASNPVRTQATGQDGGVFGLNFTGQAQSNQVNVSTGVVETRINNALRQQFPLAVYVVDSVLLPEELFGTKTTPTGAPAPKSST----------SSSDADSPA------ADDEHKSAGSSVKRTSL---GI-VVSFALFCCSVIYI 246
BLAST of Vigun08g220400.1 vs. DB:Swiss
Match: FLA12_ARATH (Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana OX=3702 GN=FLA12 PE=2 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 1.609e-11 Identity = 35/114 (30.70%), Postives = 64/114 (56.14%), Query Frame = 1 Query: 649 DGGLTVFCPTDSAVNGF-APKYKNLTDSQKVSLLLYHGVPLYESLQMLKSGNGPMNTLATEGAN-KYDFTVQTEGEDVSLKTKVNTVSIIGTLIDQDPFVAYKINKVLMPRELF 984 D G+T+F P+DS+ G A +LTD Q+V L+ +H +P Y S ++ + P+ T A + A+ + V T G V++ + V ++ G + Y+++KVL+P+++F Sbjct: 74 DNGITIFAPSDSSFTGLKAGTLNSLTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQAGDSADGHFPLNVTTSGNTVNITSGVTNTTVSGNVYSDGQLAVYQVDKVLLPQQVF 187 The following BLAST results are available for this feature:
BLAST of Vigun08g220400.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun08g220400.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g220400.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g220400.1; organism=Vigna unguiculata; type=mRNA; length=1843bpback to top protein sequence of Vigun08g220400.1_Vu_IT97K-499-35_v1.1 >Vigun08g220400.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g220400.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g220400.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=409bpback to top mRNA from alignment at Vu08:37916788..37918630- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun08g220400.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g220400.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g220400.1; organism=Vigna unguiculata; type=mRNA; length=1843bp; location=Sequence derived from: Vu08:37916788..37918630- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu08:37916788..37918630- >Vigun08g220400.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g220400.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g220400.1; organism=Vigna unguiculata; type=CDS; length=1227bp; location=Sequence derived from: Vu08:37916788..37918630- (Vigna unguiculataback to top |