Transcript Overview
| Name | Vigun09g158200.1 |
|---|
| Unique Name | Vigun09g158200.1_Vu_IT97K-499-35_v1.1 |
|---|
| Type | mRNA |
|---|
| Organism | Vigna unguiculata (cowpea) |
|---|
| Sequence length | 1499 |
|---|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun09g158200.1 | Vigun09g158200.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
| Vigun09g158200.1_Vu_IT97K-499-35_v1.1 | Vigun09g158200.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun09g158200.1.v1.1.five_prime_UTR.1 | Vigun09g158200.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun09g158200.1.v1.1.CDS.1 | Vigun09g158200.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun09g158200.1.v1.1.CDS.2 | Vigun09g158200.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun09g158200.1.v1.1.three_prime_UTR.1 | Vigun09g158200.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..24 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..33 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 126..141 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 212..245 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 126..268 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g158200.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g158200.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g158200.1; organism=Vigna unguiculata; type=mRNA; length=1499bp
CCTACAATTGAGAGACGTAGAAATGCGAGAAATGTGAAAGGAAATTGCAG
CAATTACAATACATCATCCTCAACTATCTAGAATCCCTTGACTTTTTAGA
CCCCTCTTTAACTCTCTCTCTTTATGTGTCATTTTAAATCTTCCTTACCA
CGAAATTAATACCATCACCCTACACCTTTCAGCCAAACCCTGACGTCCCT
CAACACATCATCACGCTCTTCTCTTCTCAACACGGACACATATATTCCTT
CCTTCATTCATTCCTCTGTTTACTCTAAaacagaacacaaacagaacaga
acagaGAACCAACGCCATGCTTGATCCCAGGACACACCACCCCACCGATT
CTTTTCATCTGTACGACGGAACCCGACACAAACCTCACACCACATGGGAA
CCCACCAACTCTCTTATGTGGCCTTCCAAACCGCCTTTTCAGGAACTAAA
CGAGGATGATTCCGGAATTTGTTCTCCTCCCATGTGGACCACCAGCCCCC
CACACAGCCAAAACGACCACCGCACCCTTTCACCCACGTCCAGGACCCAG
GCCATAGTTAGAGGGCAGAGGGAACTCATGGAAATGGTCAAGAACATGCC
CGAGTCCAACTACGAGCTCTCCTTGAAGGACCTCGTCGAGCACCACAGGC
TAGAGACCGCAGTGGAGGAGCGGAGGAATTTGACCGTCTACAAGAGGGAC
AAAAGCGGTGCCGGTAAAAGGGTTGATAACAAGATGACGCAGGTGAAGAG
AAACGGAAACATTGACCGTGGAGGTTTCTACCTCAAAATGGGGCTTCCTT
TTTCTCTGGGGTCTaaggacaagaacaagagcaagaagaagaagaGTGAG
TCCTCTGGGAATAGCAGTTCAAGAGTTACCCCTAAACCTGATGGATCAAC
AAAGGGTGGTGTTGATAAGGAGTGGTGGAAGAAGAGCCCTTCCGCGTGTA
AAGGGAGTGACAGTGGTGAATCCAGTATCAATAGTGGCAGTTCCAAAAGT
TCCGGTagcagtagtagcaacagcaacagcagcagcaatagcaggagtaa
tagcagGCGTGAGAAGAGTGGTAGGCTTTGCTGGTTTTTCATTAGCAGAC
GCAAAAGCCAAACACAGAAGTAAGATATGGCAGCTTGTGATGGAACACAG
TGCTCTATGATGTTCATGTTCATGTTCATGATCCTCGGAAGCTTCCTCAC
AAGTTTTAGCGCAAGTGATTTGATAACTGTTGCATGTAAATGTTTATGAG
TGATGAAGGTACACCACCTTGTAATCTCGTAAAAGTGCATTGTGGGGATG
GAATCTGTATAAATGTCACTGTGCTTCATGTAACTAAAGCTTTTCTGATT
GATAAGGCAAATACAATACAAGCATGCCAAGAGAAAATTTACTATGTTCC
AATTTTTTTGTTTTATATCCCTGGATGAGTATGAAACTGCTTGGAAACAT
TTTATGATGCCTTGGATCCCACAAATGAAGTCGTCGTTACTTAAGTGAT back to topprotein sequence of Vigun09g158200.1_Vu_IT97K-499-35_v1.1 >Vigun09g158200.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g158200.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g158200.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=269bp
MLDPRTHHPTDSFHLYDGTRHKPHTTWEPTNSLMWPSKPPFQELNEDDSG
ICSPPMWTTSPPHSQNDHRTLSPTSRTQAIVRGQRELMEMVKNMPESNYE
LSLKDLVEHHRLETAVEERRNLTVYKRDKSGAGKRVDNKMTQVKRNGNID
RGGFYLKMGLPFSLGSKDKNKSKKKKSESSGNSSSRVTPKPDGSTKGGVD
KEWWKKSPSACKGSDSGESSINSGSSKSSGSSSSNSNSSSNSRSNSRREK
SGRLCWFFISRRKSQTQK* back to topmRNA from alignment at Vu09:32485270..32487530+ Legend: mRNAfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun09g158200.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g158200.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g158200.1; organism=Vigna unguiculata; type=mRNA; length=2261bp; location=Sequence derived from: Vu09:32485270..32487530+ (Vigna unguiculata
CCTACAATTGAGAGACGTAGAAATGCGAGAAATGTGAAAGGAAATTGCAG
CAATTACAATACATCATCCTCAACTATCTAGAATCCCTTGACTTTTTAGA
CCCCTCTTTAACTCTCTCTCTTTATGTGTCATTTTAAATCTTCCTTACCA
CGAAATTAATACCATCACCCTACACCTTTCAGCCAAACCCTGACGTCCCT
CAACACATCATCACGCTCTTCTCTTCTCAACACGGACACATATATTCCTT
CCTTCATTCATTCCTCTGTTTACTCTAAAACAGAACACAAACAGAACAGA
ACAGAGAACCAACGCCATGCTTGATCCCAGGACACACCACCCCACCGATT
CTTTTCATCTGTACGACGGAACCCGACACAAACCTCACACCACATGGGAA
CCCACCAACTCTCTTATGTGGCCTTCCAAACCGCCTTTTCAGGAACTAAA
CGAGGATGATTCCGGAATTTGTTCTCCTCCCATGTGGACCACCAGCCCCC
CACACAGCCAAAACGACCACCGCACCCTTTCACCCACGTCCAGGACCCAG
GCCATAGTTAGAGGGCAGAGGGAACTCATGGAAATGGTCAAGAACATGCC
CGAGTCCAACTACGAGCTCTCCTTGAAGGACCTCGTCGAGCACCACAGGC
TAGAGACCGCAGTGGAGGAGCGGAGGAATTTGACCGTCTACAAGAGGGAC
AAAAGCGGTGCCGGTAAAAGGGTTGATAACAAGATGACGCAGGTGAAGAG
AAACGGAAACATTGACCGTGGAGGTTTCTACCTCAAAATGGGGCTTCCTT
TTTCTCTGGGGTCTAAGGACAAGAACAAGAGCAAGAAGAAGAAGAGTGAG
TCCTCTGGGAATAGCAGTTCAAGAGTTACCCCTAAACCTGATGGATCAAC
AAAGGGTGGTGTTGATAAGGAGTGGTGGAAGAAGAGCCCTTCCGCGTGTA
AAGGGAGTGACAGTGGTGAATCCAGTATCAATAGTGGCAGTTCCAAAAGT
TCCGGTAGCAGTAGTAGCAACAGCAACAGCAGCAGCAATAGCAGGAGTAA
TAGCAGGTATGTTCCATCTTCGTTCGAGCCACTTCATAACAGATGCATAT
AGGAAATTGCGTGTTTTGTCCAAAAATTAAACATAAATGCTCAAAGATTT
AAAAGTAACAACAGATTAAAACTACAGCTATAGTTTTTTAGTCGAAAGTT
GTTTTTTCCAATGGTTGTTTGGTTCTTGTAACAACAAGATCAGAACATTC
AGTTGTTTGTCCTTCAAATTTAACTGATTCTTAGGAAGCATATCTGCTTG
AAAGCCGAAAAAAATATCTGGTGTCTCGATGTTGCATTCAACCCAATACG
TTGTGACTTAAAAAGTCAGAGTAAAATTTCAACGCCCAAAAAAGGTGCAA
CGCGCATAGGTTGTCGGGTTGCTTGAACTTGCCTTAAAACAGTATCTTAA
AAATCAATCCATGACTGTCACGGTTCAAGAGGCGACAGCACCTTTTTCAG
TGCTTCTTTTAAGAACTTTAATATCAATAAGAAGAAGAAAAGTGGGGTTA
TGTCCATACTCTAATGTTCAGTGTTCAAGTTGTTGCACAAAGGGACAACA
CCTAGTTGCAAAGCACGGCATAGGTGTAAGGCAACCTGGTATGGAGTGTG
TACTTTGAATTAGGAAAATCGCTTAACCAATTATGAAACATTGTTTATGA
ATAGTAACAAGGATAGTAAATATAAATCTTGACTTACCAAATATTTGCTT
GTGTAATTTATGCCAGTATCGTGATTGTAATTTAATGAGTTAGTAATCAA
TTTTTGGATGTGATGCAGGCGTGAGAAGAGTGGTAGGCTTTGCTGGTTTT
TCATTAGCAGACGCAAAAGCCAAACACAGAAGTAAGATATGGCAGCTTGT
GATGGAACACAGTGCTCTATGATGTTCATGTTCATGTTCATGATCCTCGG
AAGCTTCCTCACAAGTTTTAGCGCAAGTGATTTGATAACTGTTGCATGTA
AATGTTTATGAGTGATGAAGGTACACCACCTTGTAATCTCGTAAAAGTGC
ATTGTGGGGATGGAATCTGTATAAATGTCACTGTGCTTCATGTAACTAAA
GCTTTTCTGATTGATAAGGCAAATACAATACAAGCATGCCAAGAGAAAAT
TTACTATGTTCCAATTTTTTTGTTTTATATCCCTGGATGAGTATGAAACT
GCTTGGAAACATTTTATGATGCCTTGGATCCCACAAATGAAGTCGTCGTT
ACTTAAGTGAT back to topCoding sequence (CDS) from alignment at Vu09:32485270..32487530+ >Vigun09g158200.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g158200.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g158200.1; organism=Vigna unguiculata; type=CDS; length=807bp; location=Sequence derived from: Vu09:32485270..32487530+ (Vigna unguiculata
ATGCTTGATCCCAGGACACACCACCCCACCGATTCTTTTCATCTGTACGA
CGGAACCCGACACAAACCTCACACCACATGGGAACCCACCAACTCTCTTA
TGTGGCCTTCCAAACCGCCTTTTCAGGAACTAAACGAGGATGATTCCGGA
ATTTGTTCTCCTCCCATGTGGACCACCAGCCCCCCACACAGCCAAAACGA
CCACCGCACCCTTTCACCCACGTCCAGGACCCAGGCCATAGTTAGAGGGC
AGAGGGAACTCATGGAAATGGTCAAGAACATGCCCGAGTCCAACTACGAG
CTCTCCTTGAAGGACCTCGTCGAGCACCACAGGCTAGAGACCGCAGTGGA
GGAGCGGAGGAATTTGACCGTCTACAAGAGGGACAAAAGCGGTGCCGGTA
AAAGGGTTGATAACAAGATGACGCAGGTGAAGAGAAACGGAAACATTGAC
CGTGGAGGTTTCTACCTCAAAATGGGGCTTCCTTTTTCTCTGGGGTCTAA
GGACAAGAACAAGAGCAAGAAGAAGAAGAGTGAGTCCTCTGGGAATAGCA
GTTCAAGAGTTACCCCTAAACCTGATGGATCAACAAAGGGTGGTGTTGAT
AAGGAGTGGTGGAAGAAGAGCCCTTCCGCGTGTAAAGGGAGTGACAGTGG
TGAATCCAGTATCAATAGTGGCAGTTCCAAAAGTTCCGGTAGCAGTAGTA
GCAACAGCAACAGCAGCAGCAATAGCAGGAGTAATAGCAGGCGTGAGAAG
AGTGGTAGGCTTTGCTGGTTTTTCATTAGCAGACGCAAAAGCCAAACACA
GAAGTAA back to top
|
