Vigun09g162600.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun09g162600.1 vs. DB:Swiss
Match: RFC2_ORYSJ (Replication factor C subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC2 PE=2 SV=1) HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0 Identity = 263/334 (78.74%), Postives = 296/334 (88.62%), Query Frame = 1 Query: 7 SSQQWVEKYRPRQVKDVAYQEEVIRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIARQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTSKRKNGYLCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEVIMSSRILYICKEEGLYLDTAALSTLSSISHGDLRRAITYLQSAARLFGXXXXXXXXXXXXGVVPEKVVEAVLQACRSGNFDFANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARISKKLGEADKCLVDGADEYLQLLAVVSNTMKAFSNIPEEFAY 1008 SSQ WVEKYRPRQVKDVA+QEEV+RVLT TL+T PHMLFYGPPGTGKTTTALAIA QL+GPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVG S RK GY CPP+KII+LDEADSMTEDAQNALRRTMETYSKVTRFFFICNY+SRIIEPLASRCAKFRFKPLSE +MS+RIL+IC EEGL LD AL+TLS+IS+GDLRRAITYLQSAARLFGSSISS +LISVSG +PE VV+++L +C+SG FD ANKEVNN IA+GYP SQ+++Q + IV +D+ DEQKARI KKLGEADKCLVDGADEYLQLL V S T++A ++P+ + Sbjct: 7 SSQPWVEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVG-SARKGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDAQALATLSTISNGDLRRAITYLQSAARLFGSSISSTDLISVSGAIPEDVVKSLLASCKSGEFDVANKEVNNIIADGYPVSQLISQFLDVIVNADDIPDEQKARICKKLGEADKCLVDGADEYLQLLDVASETIRALFDMPQTLVF 339
BLAST of Vigun09g162600.1 vs. DB:Swiss
Match: RFC4_ARATH (Replication factor C subunit 4 OS=Arabidopsis thaliana OX=3702 GN=RFC4 PE=2 SV=1) HSP 1 Score: 527.324 bits (1357), Expect = 0.000e+0 Identity = 258/335 (77.01%), Postives = 297/335 (88.66%), Query Frame = 1 Query: 1 MQSSQQWVEKYRPRQVKDVAYQEEVIRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIARQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTSKRKNGYLCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEVIMSSRILYICKEEGLYLDTAALSTLSSISHGDLRRAITYLQSAARLFGXXXXXXXXXXXXGVVPEKVVEAVLQACRSGNFDFANKEVNNFIAEGYPASQMLTQLFEAIVE-ENDLSDEQKARISKKLGEADKCLVDGADEYLQLLAVVSNTMKAFSNIPEEF 1002 +QSSQ WVEKYRP+QVKDVA+QEEV+RVLTNTL+T CPHMLFYGPPGTGKTTTALAIA QLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVG++ R++GY CP FKII+LDEADSMTEDAQNALRRTMETYSKVTRFFFICNY+SRIIEPLASRCAKFRFKPLSE +MS+RIL+IC EEGL LD ALSTLSSIS GDLRRAITYLQSA RLFGS+I+S +L++VSGVVP +VV + AC+SG+FD ANKEV+N +AEGYPASQ++ QLF+ + E ++D++D QKA+I K L E DK LVDGADEYLQLL V S+T+ A S + ++F Sbjct: 5 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDKRLVDGADEYLQLLDVASSTICALSEMAQDF 339
BLAST of Vigun09g162600.1 vs. DB:Swiss
Match: RFC4_HUMAN (Replication factor C subunit 4 OS=Homo sapiens OX=9606 GN=RFC4 PE=1 SV=2) HSP 1 Score: 371.318 bits (952), Expect = 5.502e-127 Identity = 182/324 (56.17%), Postives = 240/324 (74.07%), Query Frame = 1 Query: 19 WVEKYRPRQVKDVAYQEEVIRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIARQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTSKRKNGYLCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEVIMSSRILYICKEEGLYLDTAALSTLSSISHGDLRRAITYLQSAARLF-GXXXXXXXXXXXXGVVPEKVVEAVLQACRSGNFDFANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARISKKLGEADKCLVDGADEYLQLLAVVSNTMKAFSN 987 WVEKYRP+ V +VA+QEEV+ VL +LE P++LFYGPPGTGKT+T LA AR+LFGPEL++ RVLELNASD+RGI VVR K+K+FA + V S R +G CPPFKI++LDEADSMT AQ ALRRTME SK TRF ICNYVSRIIEPL SRC+KFRFKPLS+ I R+L I K+E + + ++ L +S GDLR+AIT+LQSA RL G I+ + + ++GV+P + ++ V AC+SG+FD V + I EG+ A+Q++ QL + +V EN+LSD+QK+ I++KL E DKCL DGADE+LQL+++ + M+ S Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGS-RSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVV-ENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLSQ 361
BLAST of Vigun09g162600.1 vs. DB:Swiss
Match: RFC4_MOUSE (Replication factor C subunit 4 OS=Mus musculus OX=10090 GN=Rfc4 PE=1 SV=1) HSP 1 Score: 369.777 bits (948), Expect = 1.694e-126 Identity = 179/324 (55.25%), Postives = 237/324 (73.15%), Query Frame = 1 Query: 19 WVEKYRPRQVKDVAYQEEVIRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIARQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTSKRKNGYLCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEVIMSSRILYICKEEGLYLDTAALSTLSSISHGDLRRAITYLQSAARLF-GXXXXXXXXXXXXGVVPEKVVEAVLQACRSGNFDFANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARISKKLGEADKCLVDGADEYLQLLAVVSNTMKAFSN 987 WVEKYRP+ V +VA+Q+EV+ VL +LE P++LFYGPPGTGKT+T LA AR+LFGPEL++ RVLELNASD+RGI VVR K+K+FA + V S R +G CPPFKI++LDEADSMT AQ ALRRTME SK TRF ICNYVSRIIEPL SRC+KFRFKPLS+ I R+L I ++E + + ++ L IS GDLR+AIT+LQSA RL G +S + + ++GV+P ++ + AC SG+FD V N I EG+ A+Q++ QL +AI+E +LSD+ K+ I++KL E DKCL DGADE+LQL+++ + M+ + Sbjct: 40 WVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGS-RSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKSIITEKLAEVDKCLADGADEHLQLMSLCATVMQQLTQ 362
BLAST of Vigun09g162600.1 vs. DB:Swiss
Match: RFC4_DICDI (Probable replication factor C subunit 4 OS=Dictyostelium discoideum OX=44689 GN=rfc4 PE=3 SV=1) HSP 1 Score: 352.829 bits (904), Expect = 4.621e-120 Identity = 167/328 (50.91%), Postives = 234/328 (71.34%), Query Frame = 1 Query: 4 QSSQQWVEKYRPRQVKDVAYQEEVIRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIARQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTSKRKNGYLCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEVIMSSRILYICKEEGLYLDTAALSTLSSISHGDLRRAITYLQSAARLFGXXXXXXXXXXXXGVVPEKVVEAVLQACRSGNFDFANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARISKKLGEADKCLVDGADEYLQLLAVVSNTMKAFSN 987 + ++ WV KYRP+ V DV+YQE+VI L +L TG+ PH+LFYGPPGTGKT+T LAIA ++GPEL K RVLELNASD+RGI VVRTKIK+FA AV + FK+I+LDEADSMT DAQ ALRRT+ET SK TRF +CNY+SRII+PLASRCAKFRFKPL V R+ +I ++EG+ + + + +S+GD+R+AITYLQSA R F + IS + + +++G +P ++++ ++ C+ +FD V + IA+GYP SQ+++QLF+ ++ DL+ QK+ I+ K+G D+ L+DG++E+LQL + S MK +N Sbjct: 7 KDTEPWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMDIYGPELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEADSMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKFISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSLPPQLIKQLVDCCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKSHITMKIGNVDRNLIDGSEEFLQLFDLSSYIMKQLNN 334
BLAST of Vigun09g162600.1 vs. DB:Swiss
Match: RFC2_SCHPO (Replication factor C subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rfc2 PE=1 SV=1) HSP 1 Score: 317.775 bits (813), Expect = 2.552e-106 Identity = 157/322 (48.76%), Postives = 224/322 (69.57%), Query Frame = 1 Query: 4 QSSQQWVEKYRPRQVKDVAYQEEVIRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIARQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTSKRKNGYLCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEVIMSSRILYICKEEGLYLDTAALSTLSSISHGDLRRAITYLQSAARLF-GXXXXXXXXXXXXGVVPEKVVEAVLQACRSGNFDFANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARISKKLGEADKCLVDGADEYLQLLAVVSN 966 + S WVE YRP+ + V+ QE ++VL TL + + PHMLFYG PGTGKT+T LA++R+LFGP+L KSRVLELNASD+RGI+++R K+K FA V + + +GY CPPFKII+LDEADSMT+DAQ ALRRTME+Y+++TRF ICNY++RII+PL+SRC+K+RFKPL M R+ +I ++ + ++ ++ L S GD+R+AIT+LQSAA L G+ I+ ++ ++G VP ++ ++L + N + AEGY +L+QL + +++E LS K +I KL E DK L DGADE LQLL ++S+ Sbjct: 16 KKSIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTV--TNKVDGYPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPITISSVEELAGAVPYNIIRSLLDTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVLLKEETLSSPVKYKIFMKLSEVDKRLNDGADETLQLLDLLSS 335
BLAST of Vigun09g162600.1 vs. DB:Swiss
Match: RFC2_YEAST (Replication factor C subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RFC2 PE=1 SV=1) HSP 1 Score: 312.768 bits (800), Expect = 3.728e-104 Identity = 156/325 (48.00%), Postives = 221/325 (68.00%), Query Frame = 1 Query: 7 SSQQWVEKYRPRQVKDVAYQEEVIRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIARQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTSKRKN--GYLCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEVIMSSRILYICKEEGLYLDTAALSTLSSISHGDLRRAITYLQSAARLF-----GXXXXXXXXXXXXGVVPEKVVEAVLQACRSGNFDFANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARISKKLGEADKCLVDGADEYLQLLAVV 960 + Q WVEKYRP+ + +V Q+ + VL TL++ + PHMLFYGPPGTGKT+T LA+ ++L+GP+L KSR+LELNASD+RGI++VR K+K+FA + V + + Y CPP+KII+LDEADSMT DAQ+ALRRTMETYS VTRF ICNYV+RII+PLASRC+KFRFK L R+ +I ++E + D L + IS GDLRR IT LQSA++ G +I+S + ++GVVP ++ +++ +SG+FD K VN F+ G+ A+ ++ QL E + ++ K +IS L D L +G +E++QLL ++ Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNGTNEHIQLLNLL 347
BLAST of Vigun09g162600.1 vs. DB:Swiss
Match: RFC2_PHANO (Replication factor C subunit 2 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=RFC2 PE=3 SV=1) HSP 1 Score: 313.538 bits (802), Expect = 1.030e-103 Identity = 171/366 (46.72%), Postives = 230/366 (62.84%), Query Frame = 1 Query: 13 QQWVEKYRPRQVKDVAYQEEVIRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIARQLFGPELYKSRVLELNASDDRGINVVRTKIKDFA----AVA----VGTSKRKNG----------YLCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEVIMSSRILYICKEEGLYLDTAALSTLSSISHGDLRRAITYLQSAARLFGXXXXXXXXXXX-----------------------------XGVVPEKVVEAVLQ------ACRSGNFDFANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARISKKLGEADKCLVDGADEYLQLL 951 Q WVEKYRP+ + +V Q+ I++L+ TL++ + PHMLFYGPPGTGKT+T LA+A+QL+GPEL KSRVLELNASD+RGI++VR K+KDFA +VA V T + G Y CPPFKIIVLDEADSMT+DAQ+ALRRTMETYS++TRF +CNYV+RII+PLASRC+KFRFK L + R+ I K E + LD L ++ GDLR+AIT+LQSAARL G++ ++ V +GV+P + + A +S ++ K V N IAEG+ ASQ ++QL+E ++ + + D +K R++ E DK LVDG DE+L +L Sbjct: 33 QPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAKMVRYRDKYSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQSAARLVGATQTAGRKKKVVVDDEDEMDIDPPSAPSKTTISLEQIAEIAGVIPAPTLASFSDALFPKSAAKSIRYNEIAKVVENMIAEGWSASQTVSQLYEQVMFDERVEDIKKVRLAGVFSETDKRLVDGGDEHLAVL 398
BLAST of Vigun09g162600.1 vs. DB:Swiss
Match: RFCS_ARCFU (Replication factor C small subunit OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) OX=224325 GN=rfcS PE=1 SV=1) HSP 1 Score: 263.462 bits (672), Expect = 2.683e-85 Identity = 148/323 (45.82%), Postives = 202/323 (62.54%), Query Frame = 1 Query: 1 MQSSQQWVEKYRPRQVKDVAYQEEVIRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIARQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVA-VGTSKRKNGYLCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEVIMSSRILYICKEEGLYLDTAALSTLSSISHGDLRRAITYLQSAARLFGXXXXXXXXXXXXGVVPEKVVEAVLQACRSGNFDFANKEVNNFIAE-GYPASQMLTQLFEAIVEENDLSDEQKARISKKLGEADKCLVDGADEYLQLLAVVS 963 M++ + WVEKYRPR + +V Q+EVI+ L +E + PH+LF GPPGTGKT TA+A+AR LFG E ++ +E+NASD+RGI+VVR KIK+FA A +G + PFKII LDEAD++T DAQ ALRRTME YSK RF CNYVSRIIEP+ SRCA FRFKP+ + M R+L IC++EG+ + L L IS GD R+AI LQ AA + + + PE++ E ++Q GNF A + ++ + E G ++ QLF I+ + D K ++ KLGE D L +GA+E +QL A ++ Sbjct: 1 MENFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGA---------PFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTE-LIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREII-SMPIKDSLKVQLIDKLGEVDFRLTEGANERIQLDAYLA 311
BLAST of Vigun09g162600.1 vs. DB:Swiss
Match: RFCS1_PYRIL (Replication factor C small subunit 1 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189 / GEO3) OX=384616 GN=rfcS1 PE=3 SV=1) HSP 1 Score: 243.817 bits (621), Expect = 1.393e-77 Identity = 132/311 (42.44%), Postives = 189/311 (60.77%), Query Frame = 1 Query: 19 WVEKYRPRQVKDVAYQEEVIRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIARQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVA-VGTSKRKNGYLCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEVIMSSRILYICKEEGLYLDTAALSTLSSISHGDLRRAITYLQSAARLFGXXXXXXXXXXXXGVVPEKVVEAVLQACRSGNFDFANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARISKKLGEADKCLVDGADEYLQL 948 W EKYRPR +V EEV L +++G+ PH+LFYGPPGTGKTT AL +AR+L+G E ++ LELNASD+RGINV+R ++K+FA A VG + PFK+++LDEAD+MT DAQ ALRR ME Y++ TRF + NYVSRII+P+ SRCA FRF P+ +M+ R+ YI K EG+ + A+ + +S GD+R+AI LQ AA + + + + P +VE + SG++ A +++ + A + F+ + L DE KA +++ L + D L GADE +QL Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYG-EYWRENTLELNASDERGINVIRERVKEFARTAPVGKA---------PFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLKYIAKSEGVEVKEDAIDLIYELSEGDMRKAINILQVAAATNKIVDRNVVAAAAAAIRPTDIVE-LFNLALSGDYLKAREKMRELMYVKGVAGVDFIRAFQRELIRMSLDDETKAEVAELLADVDYRLTQGADEEIQL 305 The following BLAST results are available for this feature:
BLAST of Vigun09g162600.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g162600.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g162600.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g162600.1; organism=Vigna unguiculata; type=mRNA; length=1738bpback to top protein sequence of Vigun09g162600.1_Vu_IT97K-499-35_v1.1 >Vigun09g162600.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g162600.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g162600.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=339bpback to top mRNA from alignment at Vu09:33026176..33032173+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun09g162600.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g162600.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g162600.1; organism=Vigna unguiculata; type=mRNA; length=5998bp; location=Sequence derived from: Vu09:33026176..33032173+ (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu09:33026176..33032173+ >Vigun09g162600.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g162600.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g162600.1; organism=Vigna unguiculata; type=CDS; length=1017bp; location=Sequence derived from: Vu09:33026176..33032173+ (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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