Vigun09g171400.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun09g171400.1 vs. DB:Swiss
Match: GRPE_THEEB (Protein GrpE OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=grpE PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 4.558e-32 Identity = 69/160 (43.12%), Postives = 102/160 (63.75%), Query Frame = 1 Query: 376 LIQNVSSLSADKAT-------SKDRYVRLQADFDNFRKRSDKERLSIQSDAQQELIEQLLLMVDSFXXXXXXXXXXXXXXXXIDVSYQGIYKQFVEVLRSHHVSVIATVGKPFNPLQHEAIAREESTEFKKGIIIKETRRGFLLRDRVLRPAQVKVSLGP 834 L++ +++L A KA+ +Y+RL ADF+NFRKR+ +E+ ++ + +I LL +VDSFE + + TE E+KI SYQG+YKQ VE L+ VS + GKPF+P HEA+ RE + E +G +I+E +RG++L DRVLR A VKV+ P Sbjct: 76 LLEQIAALEAAKASLSQVVEERNSQYIRLAADFENFRKRTQREKEELELQIKCSVIADLLPVVDSFELARTHIQTETEAEEKIHRSYQGVYKQLVECLKRIGVSAMQAKGKPFDPNLHEAVLREATNEHPEGTVIEELKRGYMLGDRVLRHAMVKVAAPP 235
BLAST of Vigun09g171400.1 vs. DB:Swiss
Match: GRPE_SYNSC (Protein GrpE OS=Synechococcus sp. (strain CC9605) OX=110662 GN=grpE PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 3.376e-31 Identity = 68/164 (41.46%), Postives = 106/164 (64.63%), Query Frame = 1 Query: 358 VNRKNKLIQNVSSLSADKATSKDRYVRLQADFDNFRKRSDKERLSIQSDAQQELI----EQLLLMVDSFXXXXXXXXXXXXXXXXIDVSYQGIYKQFVEVLRSHHVSVIATVGKPFNPLQHEAIAREESTEFKKGIIIKETRRGFLLRDRVLRPAQVKVSLGPG 837 +R +L Q +S+L + T +Y+R+ ADFDNFRKR ++ Q D +++L+ ++L +VD+FE+ +QQ E+ + + SYQG+YKQ VEVL+ V+ + VG+ F+P HEA+ REES+EF + ++ +E +RG+ RVLR A VKVS+GPG Sbjct: 44 ADRMQQLEQELSALKQEHDTLNSQYMRIAADFDNFRKRQSRD----QDDMRKQLVCSTLTEILPVVDNFERARQQLNPEGEEAQALHRSYQGLYKQLVEVLKQQGVARMDVVGQEFDPNLHEAVLREESSEFAEDVVSEELQRGYHRDGRVLRHAMVKVSMGPG 203
BLAST of Vigun09g171400.1 vs. DB:Swiss
Match: GRPE_SYNPX (Protein GrpE OS=Synechococcus sp. (strain WH8102) OX=84588 GN=grpE PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 9.022e-31 Identity = 68/171 (39.77%), Postives = 108/171 (63.16%), Query Frame = 1 Query: 337 EKGIYSAVNRKNKLIQNVSSLSADKATSKDRYVRLQADFDNFRKRSDKERLSIQSDAQQELI----EQLLLMVDSFXXXXXXXXXXXXXXXXIDVSYQGIYKQFVEVLRSHHVSVIATVGKPFNPLQHEAIAREESTEFKKGIIIKETRRGFLLRDRVLRPAQVKVSLGPG 837 E + R +L + +L + T + +Y+R+ ADFDNFRKR ++ Q D +Q+L+ ++L +VD+FE+ +QQ +E+ + + SYQG+YKQ V+VL+ V+ + VG+ F+P HEA+ REESTE + ++I+E +RG+ L +VLR A VKVS+GPG Sbjct: 36 EGSLTDPAERLQQLEHELQTLKQEHETLQSQYMRIAADFDNFRKRQSRD----QEDIRQQLVCSTLSEILPVVDNFERARQQLNPESEEAQALHRSYQGLYKQLVDVLKQQGVARMEVVGQLFDPTLHEAVLREESTEQPEDVVIEELQRGYHLNGKVLRHALVKVSMGPG 202
BLAST of Vigun09g171400.1 vs. DB:Swiss
Match: GRPE_PROMP (Protein GrpE OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / NIES-2087 / MED4) OX=59919 GN=grpE PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 2.650e-30 Identity = 74/182 (40.66%), Postives = 113/182 (62.09%), Query Frame = 1 Query: 313 DENGVALIEKGIYSAVNRKNKLIQN---VSSLSADKATSKDRYVRLQADFDNFRKRSDKERLSIQSDAQQELIEQLLLMVDSFXXXXXXXXXXXXXXXXIDVSYQGIYKQFVEVLRSHHVSVIATVGKPFNPLQHEAIAREESTEFKKGIIIKETRRGFLLRDRVLRPAQVKVSLGPGATKS 849 D+ + + ++ IY A + KN + N + L + T K +YVR+ ADFDNFRKR +++ ++ + + +L +VD+FE+ +QQ K +E+ + + SYQG+YKQ VEVL+ VS + V + F+P HEA+ RE S EF + III+E +RG+ L +VLR A VKVS+GPG S Sbjct: 36 DKQTLEVDDENIY-AEDLKNTITNNDARLEQLEKEHETLKSQYVRIAADFDNFRKRQSRDQDDLKVQLVSKALTAILPIVDNFERARQQLKPESEEAQTLHRSYQGLYKQLVEVLKQQGVSPMRVVAQQFDPKLHEAVLREPSQEFNEDIIIEELQRGYHLEGKVLRHALVKVSMGPGQQNS 216
BLAST of Vigun09g171400.1 vs. DB:Swiss
Match: GRPE_SYNS9 (Protein GrpE OS=Synechococcus sp. (strain CC9902) OX=316279 GN=grpE PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 3.239e-30 Identity = 71/179 (39.66%), Postives = 110/179 (61.45%), Query Frame = 1 Query: 358 VNRKNKLIQNVSSLSADKATSKDRYVRLQADFDNFRKRSDKERLSIQSDAQQELI----EQLLLMVDSFXXXXXXXXXXXXXXXXIDVSYQGIYKQFVEVLRSHHVSVIATVGKPFNPLQHEAIAREESTEFKKGIIIKETRRGFLLRDRVLRPAQVKVSLGPGATKSPVSPDNSMERP 882 NR +L Q ++SL + + +Y+R+ ADFDNFRKR ++ Q D +Q+L+ ++L +VD+FE+ +QQ E+ + + SYQG+YKQ V+VL+ V+ + VG+ F+P HEA+ REE+ E + I+ +E +RG+ RVLR A VKVS+GPG S D + E+P Sbjct: 48 ANRLQQLEQELNSLKQEHEAVQSQYMRIAADFDNFRKRQARD----QDDLRQQLVCSTLTEILPVVDNFERARQQLNPEGEEAQALHRSYQGLYKQLVDVLKQQGVARMEVVGQEFDPTLHEAVLREENQEHAEDIVCEELQRGYHRDGRVLRHAMVKVSMGPGPES---SSDAASEQP 219
BLAST of Vigun09g171400.1 vs. DB:Swiss
Match: GRPE_PROM3 (Protein GrpE OS=Prochlorococcus marinus (strain MIT 9303) OX=59922 GN=grpE PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 4.138e-30 Identity = 73/184 (39.67%), Postives = 110/184 (59.78%), Query Frame = 1 Query: 298 AFFNGDENGVALIEKGIYSAVNRKNKLIQNVSSLSADKATSKDRYVRLQADFDNFRKRSDKERLSIQSDAQQELI----EQLLLMVDSFXXXXXXXXXXXXXXXXIDVSYQGIYKQFVEVLRSHHVSVIATVGKPFNPLQHEAIAREESTEFKKGIIIKETRRGFLLRDRVLRPAQVKVSLGPG 837 A N DE + + R +L Q SSL + T + +Y+R+ ADFDNFRKR ++ Q D + +LI ++L +VD+FE+ +QQ + E+ + + SYQG+YKQ VEVL+ V+ + VG+ F+P HEA++RE S E + ++ +E +RG+ L RVLR A VKVS+GPG Sbjct: 27 ASMNSDEGQPSAQSAPLADNEARLQQLEQEHSSLREEHETLRSQYMRIAADFDNFRKRQSRD----QDDLRLQLICTTLSEILPVVDNFERARQQLEPQGEEAQALHRSYQGLYKQLVEVLKQLGVASMRVVGQAFDPTLHEAVSREPSEEHPEDVVTEELQRGYHLNGRVLRHALVKVSMGPG 206
BLAST of Vigun09g171400.1 vs. DB:Swiss
Match: GRPE_PROM9 (Protein GrpE OS=Prochlorococcus marinus (strain MIT 9312) OX=74546 GN=grpE PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.452e-29 Identity = 69/172 (40.12%), Postives = 107/172 (62.21%), Query Frame = 1 Query: 388 VSSLSADKATSKDRYVRLQADFDNFRKRSDKERLSIQSDAQQELIEQLLLMVDSFXXXXXXXXXXXXXXXXIDVSYQGIYKQFVEVLRSHHVSVIATVGKPFNPLQHEAIAREESTEFKKGIIIKETRRGFLLRDRVLRPAQVKVSLGPGATKSPVSPDNSMERPSTAAGID 903 + L + T K++YVR+ ADFDNFRKR +++ ++ + + +L +VD+FE+ +QQ K +E+ + + SYQG+YKQ VEVL+ VS + VG+ F+P HEA+ RE S EFK+ +I++E +RG+ L +VLR A VKVS+G G S +E+ + ID Sbjct: 63 LEQLEKEHETLKNQYVRISADFDNFRKRQSRDQDDLKVQLVSKTLTAILPIVDNFERARQQLKPESEEAQALHRSYQGLYKQLVEVLKQQGVSPMRVVGQQFDPNLHEAVLREPSEEFKEDLIVEELQRGYHLEGKVLRHALVKVSMGHGQQNSQ----EEVEKDTVEEDID 230
BLAST of Vigun09g171400.1 vs. DB:Swiss
Match: GRPE_PROMM (Protein GrpE OS=Prochlorococcus marinus (strain MIT 9313) OX=74547 GN=grpE PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.917e-29 Identity = 68/180 (37.78%), Postives = 108/180 (60.00%), Query Frame = 1 Query: 298 AFFNGDENGVALIEKGIYSAVNRKNKLIQNVSSLSADKATSKDRYVRLQADFDNFRKRSDKERLSIQSDAQQELIEQLLLMVDSFXXXXXXXXXXXXXXXXIDVSYQGIYKQFVEVLRSHHVSVIATVGKPFNPLQHEAIAREESTEFKKGIIIKETRRGFLLRDRVLRPAQVKVSLGPG 837 A N DE + + R +L Q SSL + T + +Y+R+ ADFDNFRKR +++ ++ + ++L +VD+FE+ +QQ + E+ + + SYQG+YKQ V+VL+ V+ + VG+ F+P HEA++RE S E + ++ +E +RG+ L RVLR A VKVS+GPG Sbjct: 27 ASINSDEGQSSAQSAPLADNEARLQQLEQEHSSLREEHETLRSQYMRIAADFDNFRKRQSRDQDDLRFQLICTTLSEILPVVDNFERARQQLEPQGEEAQALHRSYQGLYKQLVDVLKQMGVASMRVVGQVFDPTLHEAVSREPSEEHPEDVVTEELQRGYHLNGRVLRHALVKVSMGPG 206
BLAST of Vigun09g171400.1 vs. DB:Swiss
Match: GRPE_PROMS (Protein GrpE OS=Prochlorococcus marinus (strain AS9601) OX=146891 GN=grpE PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 3.973e-29 Identity = 66/154 (42.86%), Postives = 101/154 (65.58%), Query Frame = 1 Query: 388 VSSLSADKATSKDRYVRLQADFDNFRKRSDKERLSIQSDAQQELIEQLLLMVDSFXXXXXXXXXXXXXXXXIDVSYQGIYKQFVEVLRSHHVSVIATVGKPFNPLQHEAIAREESTEFKKGIIIKETRRGFLLRDRVLRPAQVKVSLGPGATKS 849 + L + T K++YVR+ ADFDNFRKR +++ ++ + + +L +VD+FE+ +QQ K +E+ + + SYQG+YKQ VEVL+ VS + VG+ F+P HEA+ RE S +F++ II+E +RG+ L +VLR A VKVS+GPG S Sbjct: 63 LEQLEKEHETLKNQYVRISADFDNFRKRQSRDQDDLKIQLVSKTLTAILPIVDNFERARQQLKPESEEAQSLHRSYQGLYKQLVEVLKQQGVSPMRVVGQQFDPSLHEAVLREPSEKFEEDFIIEELQRGYHLEGKVLRHALVKVSMGPGKQNS 216
BLAST of Vigun09g171400.1 vs. DB:Swiss
Match: GRPE_GLOVI (Protein GrpE OS=Gloeobacter violaceus (strain PCC 7421) OX=251221 GN=grpE PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.168e-28 Identity = 60/157 (38.22%), Postives = 99/157 (63.06%), Query Frame = 1 Query: 358 VNRKNKLIQNVSSLSADKATSKDRYVRLQADFDNFRKRSDKERLSIQSDAQQELIEQLLLMVDSFXXXXXXXXXXXXXXXXIDVSYQGIYKQFVEVLRSHHVSVIATVGKPFNPLQHEAIAREESTEFKKGIIIKETRRGFLLRDRVLRPAQVKVSL 828 + R ++L S L A + +Y RL ADFDNFRKR+ +E+ + +L++ +L + D+F++ + + E+E+K+ SYQ +Y+QF+ VL V+ + +G+PF+P QHEAI REES + ++ E ++G+LL D+VLRPA VKV++ Sbjct: 35 IARIDQLAAENSDLQKKLADYEQKYTRLMADFDNFRKRTQREKDELAYFVSAKLLKDILPVFDNFDRARAFAQPDNEREEKLHNSYQQVYRQFLSVLEKMGVTAMEAIGQPFDPAQHEAILREESAGVSQETVVAELQKGYLLADKVLRPAMVKVAI 191 The following BLAST results are available for this feature:
BLAST of Vigun09g171400.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g171400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g171400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g171400.1; organism=Vigna unguiculata; type=mRNA; length=1778bpback to top protein sequence of Vigun09g171400.1_Vu_IT97K-499-35_v1.1 >Vigun09g171400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g171400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g171400.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=304bpback to top mRNA from alignment at Vu09:34122890..34127649+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun09g171400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g171400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g171400.1; organism=Vigna unguiculata; type=mRNA; length=4760bp; location=Sequence derived from: Vu09:34122890..34127649+ (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu09:34122890..34127649+ >Vigun09g171400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g171400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g171400.1; organism=Vigna unguiculata; type=CDS; length=912bp; location=Sequence derived from: Vu09:34122890..34127649+ (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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