Vigun09g175100.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun09g175100.1 vs. DB:Swiss
Match: NHL13_ARATH (NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana OX=3702 GN=NHL13 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.059e-19 Identity = 65/224 (29.02%), Postives = 113/224 (50.45%), Query Frame = 1
Query: 67 NTYVVRVPKDQVYRFPPPENARLAEQHQASTPKQAKTSRXXXXXXXXXXXXXXXXXXXXX-XXXXXFSMLLSPKDPQFLVERFTVGDTN--------HSYIITLNVHNPNADVGISYKNNSSVSLSLDGKQIAKGEYPGMYVDHLDSTSLGVPLKGSTT--PKKVKESMSNTKKKVPLTFSTAIRSRARMKMGLLRSGTMTFDVSCMFKLDTLVNSTRILSQQC 705
+TYV++VPKDQ+YR PPPENA EQ + KT+R C S + V ++++ I + ++ P+ P++ +E F+V N S+ +T+ N N +G+ Y+ SSV + + I+ G P Y + T + + L GS +++ M N K + F I++ ++K G +++ TM +V C +D L +RI+S++C
Sbjct: 35 STYVIQVPKDQIYRIPPPENAHRFEQLS-----RKKTNRSNCRCCFCSFLAAVFILIVLAGISFAVLYLIYRPEAPKYSIEGFSVSGINLNSTSPISPSFNVTVRSRNGNGKIGVYYEKESSVDVYYNDVDISNGVMPVFYQPAKNVTVVKLVLSGSKIQLTSGMRKEMRNEVSKKTVPFKLKIKAPVKIKFGSVKTWTMIVNVDCDVTVDKLTAPSRIVSRKC 253
BLAST of Vigun09g175100.1 vs. DB:Swiss
Match: NHL6_ARATH (NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=NHL6 PE=1 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 7.068e-7 Identity = 36/163 (22.09%), Postives = 75/163 (46.01%), Query Frame = 1
Query: 268 MLLSPKDPQFLVERFTV--------GDTNHSYIITLNVHNPNADVGISYKNNSSVSLSLDGKQIAKGEYPGMYVDHLDSTSLGVPLKGST-TPKKVKESMSNTKKK---VPLTFSTAIRSRARMKMGLLRSGTMTFDVSCMFKLDTLV--NSTRILSQQCQTK 714
++ PK P + ++R + ++ +T+ NPN +GI Y++ S +++ Q++ G P Y H ++T + V + G T ++ ++ +++ +PL + R+K G L+ + F V C +D+L N +I S C+ +
Sbjct: 89 LVFKPKLPDYSIDRLQLTRFALNQDSSLTTAFNVTITAKNPNEKIGIYYEDGSKITVWYMEHQLSNGSLPKFYQGHENTTVIYVEMTGQTQNASGLRTTLEEQQQRTGNIPLRIR--VNQPVRVKFGKLKLFEVRFLVRCGVFVDSLATNNVIKIQSSSCKFR 249 The following BLAST results are available for this feature:
BLAST of Vigun09g175100.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 2
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g175100.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g175100.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g175100.1; organism=Vigna unguiculata; type=mRNA; length=1080bpback to top protein sequence of Vigun09g175100.1_Vu_IT97K-499-35_v1.1 >Vigun09g175100.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g175100.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g175100.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=241bpback to top mRNA from alignment at Vu09:34643210..34644289+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun09g175100.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g175100.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g175100.1; organism=Vigna unguiculata; type=mRNA; length=1080bp; location=Sequence derived from: Vu09:34643210..34644289+ (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu09:34643210..34644289+ >Vigun09g175100.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g175100.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g175100.1; organism=Vigna unguiculata; type=CDS; length=723bp; location=Sequence derived from: Vu09:34643210..34644289+ (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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