Vigun09g188800.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun09g188800.1 vs. DB:Swiss
Match: ERG28_ARATH (Ergosterol biosynthetic protein 28 OS=Arabidopsis thaliana OX=3702 GN=At1g10030 PE=2 SV=2) HSP 1 Score: 218.779 bits (556), Expect = 7.801e-74 Identity = 104/129 (80.62%), Postives = 117/129 (90.70%), Query Frame = 1 Query: 1 MKALGWWLIAVGTLRLASVWFGFFDIWALRLAVFSKTTMTEIHGRTFGTWTLLTCTLCYICAFNLENKPLYLATFLSFIYALGHFLTEYLIYHTMEIKNLTTVGIFAGTSIIWMLLQWNSHSKVHLKHS 387 MKALG+WL+ VG+LRLASVWFGFF+IWALRLAVFS+TTM+E+HGRTFG WTLLTCTLC++CAFNLENKPLYLATFLSFIYALGHFLTEYL Y TM I NL+TVG FAGTSI+WMLL+WNS + H K S Sbjct: 1 MKALGYWLMVVGSLRLASVWFGFFNIWALRLAVFSQTTMSEVHGRTFGVWTLLTCTLCFLCAFNLENKPLYLATFLSFIYALGHFLTEYLFYQTMTIANLSTVGFFAGTSIVWMLLEWNSLEQPHSKLS 129
BLAST of Vigun09g188800.1 vs. DB:Swiss
Match: ERG28_PONAB (Probable ergosterol biosynthetic protein 28 OS=Pongo abelii OX=9601 GN=ERG28 PE=2 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 2.491e-10 Identity = 36/109 (33.03%), Postives = 55/109 (50.46%), Query Frame = 1 Query: 1 MKALGWWLIAVGTLRLASVWFGFFDIWAL--RLAVFSKTTMTEIHGRTFGTWTLLTCTLCYICAFNLENKPLYLATFLSFIYALGHFLTEYLIYHTMEIKNLTTVGIFA 321 + L WL+ V + + + F D L +L + + RTFG WTLL+ + +CA ++ NK LY T +F+ ALGHFL+E +Y T T+G+ A Sbjct: 5 LNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKPNLVNGLQARTFGIWTLLSSVIRCLCAIDIHNKTLYHITLWTFLLALGHFLSELFVYGTAA----PTIGVLA 109
BLAST of Vigun09g188800.1 vs. DB:Swiss
Match: ERG28_HUMAN (Probable ergosterol biosynthetic protein 28 OS=Homo sapiens OX=9606 GN=ERG28 PE=1 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 2.491e-10 Identity = 36/109 (33.03%), Postives = 55/109 (50.46%), Query Frame = 1 Query: 1 MKALGWWLIAVGTLRLASVWFGFFDIWAL--RLAVFSKTTMTEIHGRTFGTWTLLTCTLCYICAFNLENKPLYLATFLSFIYALGHFLTEYLIYHTMEIKNLTTVGIFA 321 + L WL+ V + + + F D L +L + + RTFG WTLL+ + +CA ++ NK LY T +F+ ALGHFL+E +Y T T+G+ A Sbjct: 5 LNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKPNLVNGLQARTFGIWTLLSSVIRCLCAIDIHNKTLYHITLWTFLLALGHFLSELFVYGTAA----PTIGVLA 109
BLAST of Vigun09g188800.1 vs. DB:Swiss
Match: ERG28_MOUSE (Probable ergosterol biosynthetic protein 28 OS=Mus musculus OX=10090 GN=Erg28 PE=2 SV=1) HSP 1 Score: 56.6102 bits (135), Expect = 6.524e-10 Identity = 36/109 (33.03%), Postives = 55/109 (50.46%), Query Frame = 1 Query: 1 MKALGWWLIAVGTLRLASVWFGFFDIWAL--RLAVFSKTTMTEIHGRTFGTWTLLTCTLCYICAFNLENKPLYLATFLSFIYALGHFLTEYLIYHTMEIKNLTTVGIFA 321 + L WL+ V + + + F D L +L + + RTFG WTLL+ + +CA ++ NK LY T +F+ ALGHFL+E ++ T TVG+ A Sbjct: 5 LNVLRSWLVMVSIIAMGNTLQSFRDHTFLYEKLYTGKPNLVNGLQARTFGIWTLLSSVIRCLCAIDIHNKTLYHITLWTFLLALGHFLSELFVFGTAA----PTVGVLA 109
BLAST of Vigun09g188800.1 vs. DB:Swiss
Match: ERG28_YEAST (Ergosterol biosynthetic protein 28 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ERG28 PE=1 SV=1) HSP 1 Score: 51.2174 bits (121), Expect = 8.246e-8 Identity = 29/91 (31.87%), Postives = 49/91 (53.85%), Query Frame = 1 Query: 103 SKTTMTEIHGRTFGTWTLLTCTLCYICAFNLENKPLYLATFLSFIYALGHFLTEYLIYHTMEI-KNLTTVGIFAGTSIIWMLLQWNSHSKV 372 T T + RTFGTWT ++C + + A L ++ F+S++ AL HF +E LI+ T ++ K + + TS++WM Q ++ V Sbjct: 56 KPTETTHLSARTFGTWTFISCVIRFYGAMYLNEPHIFELVFMSYMVALFHFGSELLIFRTCKLGKGFMGPLVVSTTSLVWMYKQREYYTGV 146 The following BLAST results are available for this feature:
BLAST of Vigun09g188800.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 5
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g188800.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g188800.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g188800.1; organism=Vigna unguiculata; type=mRNA; length=863bpback to top protein sequence of Vigun09g188800.1_Vu_IT97K-499-35_v1.1 >Vigun09g188800.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g188800.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g188800.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=130bpback to top mRNA from alignment at Vu09:36335078..36338287+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun09g188800.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g188800.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g188800.1; organism=Vigna unguiculata; type=mRNA; length=3210bp; location=Sequence derived from: Vu09:36335078..36338287+ (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu09:36335078..36338287+ >Vigun09g188800.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g188800.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g188800.1; organism=Vigna unguiculata; type=CDS; length=390bp; location=Sequence derived from: Vu09:36335078..36338287+ (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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