Vigun09g200800.1

Transcript Overview


Name	Vigun09g200800.1
Unique Name	Vigun09g200800.1_Vu_IT97K-499-35_v1.1
Type	mRNA
Organism	Vigna unguiculata (cowpea)
Sequence length	544

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Vu09	supercontig	Vu09:37507175..37507718 +	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	2019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	2019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot	2019-10-17

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
vuvuL377	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
pvvuL068	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
pvvuL801	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
ccvuL0609	Cajanus cajan Asha genome v1.0	Cajanus cajan
asvuL538	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
asvuL715	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
vuvunR521	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
vuvunR527	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Orthologs


Gene/Transcript	Assembly	Species
rna-KK1_003489	Cajanus cajan Asha genome v1.0	Cajanus cajan
Phvul.009G101400.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
LR48_mrnaVigan04g209600	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Vigun09g200800.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Vigun09g200800	Vigun09g200800_Vu_IT97K-499-35_v1.1	Vigna unguiculata	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Vigun09g200800.1	Vigun09g200800.1_Vu_IT97K-499-35_v1.1-protein	Vigna unguiculata	polypeptide
Vigun09g200800.1_Vu_IT97K-499-35_v1.1	Vigun09g200800.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vigun09g200800.1.v1.1.five_prime_UTR.1	Vigun09g200800.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vigun09g200800.1.v1.1.CDS.1	Vigun09g200800.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vigun09g200800.1.v1.1.three_prime_UTR.1	Vigun09g200800.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	three_prime_UTR

Homology

The following BLAST results are available for this feature:

BLAST of Vigun09g200800.1 vs.

BLAST of Vigun09g200800.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0

Position :

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Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 77..100 e-value: 2.5E-7 score: 30.1

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Vu09:37507175..37507718+
coding sequence from alignment at Vu09:37507175..37507718+

mRNA sequence

>Vigun09g200800.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g200800.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g200800.1; organism=Vigna unguiculata; type=mRNA; length=544bp
GTAGCTTCTACGTGAGCAAATGAAGAGACAGAAATCTACACCACTCATTA
GACAAATACACAGGTCTATAAAGAAACTGAAGACTCTGATGCACTCTTGG
CGAGTGCATTCCACTGTATCCTCAAGTTTAAAACAAAGATGGTGCAGTTT
GTTCCACAAACGAATGAACCAGCAAAGGTTCCTTGTGGATGAAGAAATCA
CTGAGGATTATATGCTTCGATGTAGAACAACAATGGCGTGTGCTTCAGAA
GATGATATTGATAAAAGGGCTGAGATTTTTATCGCAAAATTCCGGCGACA
ACTAAGCTTGGAGAGTATAGCTTATTCTGAAACAAAGTATATTATATAAG
AGATAGTTTTTATGTGACTAACTATAATAAAGTGATTCAATGGttatttt
ttcaagttttttttttttttttATGTGTGAAATTTGTGTGTTGGGGTTTT
TATTAAATAAGTCGACATTGTTTGAAGTACATGTTGTATTGTATTACGTG
TTTTTTTTTTTCCTTTTCTGGTCGATTATGGACTTGTAGGAACT

protein sequence of Vigun09g200800.1_Vu_IT97K-499-35_v1.1

>Vigun09g200800.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g200800.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g200800.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=110bp
MKRQKSTPLIRQIHRSIKKLKTLMHSWRVHSTVSSSLKQRWCSLFHKRMN
QQRFLVDEEITEDYMLRCRTTMACASEDDIDKRAEIFIAKFRRQLSLESI
AYSETKYII*

mRNA from alignment at Vu09:37507175..37507718+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Vigun09g200800.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g200800.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g200800.1; organism=Vigna unguiculata; type=mRNA; length=544bp; location=Sequence derived from: Vu09:37507175..37507718+ (Vigna unguiculata
GTAGCTTCTACGTGAGCAAATGAAGAGACAGAAATCTACACCACTCATTA
GACAAATACACAGGTCTATAAAGAAACTGAAGACTCTGATGCACTCTTGG
CGAGTGCATTCCACTGTATCCTCAAGTTTAAAACAAAGATGGTGCAGTTT
GTTCCACAAACGAATGAACCAGCAAAGGTTCCTTGTGGATGAAGAAATCA
CTGAGGATTATATGCTTCGATGTAGAACAACAATGGCGTGTGCTTCAGAA
GATGATATTGATAAAAGGGCTGAGATTTTTATCGCAAAATTCCGGCGACA
ACTAAGCTTGGAGAGTATAGCTTATTCTGAAACAAAGTATATTATATAAG
AGATAGTTTTTATGTGACTAACTATAATAAAGTGATTCAATGGTTATTTT
TTCAAGTTTTTTTTTTTTTTTTATGTGTGAAATTTGTGTGTTGGGGTTTT
TATTAAATAAGTCGACATTGTTTGAAGTACATGTTGTATTGTATTACGTG
TTTTTTTTTTTCCTTTTCTGGTCGATTATGGACTTGTAGGAACT

Coding sequence (CDS) from alignment at Vu09:37507175..37507718+

>Vigun09g200800.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g200800.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g200800.1; organism=Vigna unguiculata; type=CDS; length=330bp; location=Sequence derived from: Vu09:37507175..37507718+ (Vigna unguiculata
ATGAAGAGACAGAAATCTACACCACTCATTAGACAAATACACAGGTCTAT
AAAGAAACTGAAGACTCTGATGCACTCTTGGCGAGTGCATTCCACTGTAT
CCTCAAGTTTAAAACAAAGATGGTGCAGTTTGTTCCACAAACGAATGAAC
CAGCAAAGGTTCCTTGTGGATGAAGAAATCACTGAGGATTATATGCTTCG
ATGTAGAACAACAATGGCGTGTGCTTCAGAAGATGATATTGATAAAAGGG
CTGAGATTTTTATCGCAAAATTCCGGCGACAACTAAGCTTGGAGAGTATA
GCTTATTCTGAAACAAAGTATATTATATAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

Search form

Vigun09g200800.1