Transcript Overview
Name | Vigun09g200800.1 |
Unique Name | Vigun09g200800.1_Vu_IT97K-499-35_v1.1 |
Type | mRNA |
Organism | Vigna unguiculata (cowpea) |
Sequence length | 544 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun09g200800.1 | Vigun09g200800.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
Vigun09g200800.1_Vu_IT97K-499-35_v1.1 | Vigun09g200800.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun09g200800.1.v1.1.five_prime_UTR.1 | Vigun09g200800.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun09g200800.1.v1.1.CDS.1 | Vigun09g200800.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun09g200800.1.v1.1.three_prime_UTR.1 | Vigun09g200800.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR008480 | Protein of unknown function DUF761, plant | PFAM | PF05553 | DUF761 | coord: 77..100 e-value: 2.5E-7 score: 30.1 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g200800.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g200800.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g200800.1; organism=Vigna unguiculata; type=mRNA; length=544bp GTAGCTTCTACGTGAGCAAATGAAGAGACAGAAATCTACACCACTCATTA GACAAATACACAGGTCTATAAAGAAACTGAAGACTCTGATGCACTCTTGG CGAGTGCATTCCACTGTATCCTCAAGTTTAAAACAAAGATGGTGCAGTTT GTTCCACAAACGAATGAACCAGCAAAGGTTCCTTGTGGATGAAGAAATCA CTGAGGATTATATGCTTCGATGTAGAACAACAATGGCGTGTGCTTCAGAA GATGATATTGATAAAAGGGCTGAGATTTTTATCGCAAAATTCCGGCGACA ACTAAGCTTGGAGAGTATAGCTTATTCTGAAACAAAGTATATTATATAAG AGATAGTTTTTATGTGACTAACTATAATAAAGTGATTCAATGGttatttt ttcaagttttttttttttttttATGTGTGAAATTTGTGTGTTGGGGTTTT TATTAAATAAGTCGACATTGTTTGAAGTACATGTTGTATTGTATTACGTG TTTTTTTTTTTCCTTTTCTGGTCGATTATGGACTTGTAGGAACT back to topprotein sequence of Vigun09g200800.1_Vu_IT97K-499-35_v1.1 >Vigun09g200800.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g200800.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g200800.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=110bp MKRQKSTPLIRQIHRSIKKLKTLMHSWRVHSTVSSSLKQRWCSLFHKRMN QQRFLVDEEITEDYMLRCRTTMACASEDDIDKRAEIFIAKFRRQLSLESI AYSETKYII* back to topmRNA from alignment at Vu09:37507175..37507718+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun09g200800.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g200800.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g200800.1; organism=Vigna unguiculata; type=mRNA; length=544bp; location=Sequence derived from: Vu09:37507175..37507718+ (Vigna unguiculata GTAGCTTCTACGTGAGCAAATGAAGAGACAGAAATCTACACCACTCATTA
GACAAATACACAGGTCTATAAAGAAACTGAAGACTCTGATGCACTCTTGG
CGAGTGCATTCCACTGTATCCTCAAGTTTAAAACAAAGATGGTGCAGTTT
GTTCCACAAACGAATGAACCAGCAAAGGTTCCTTGTGGATGAAGAAATCA
CTGAGGATTATATGCTTCGATGTAGAACAACAATGGCGTGTGCTTCAGAA
GATGATATTGATAAAAGGGCTGAGATTTTTATCGCAAAATTCCGGCGACA
ACTAAGCTTGGAGAGTATAGCTTATTCTGAAACAAAGTATATTATATAAG
AGATAGTTTTTATGTGACTAACTATAATAAAGTGATTCAATGGTTATTTT
TTCAAGTTTTTTTTTTTTTTTTATGTGTGAAATTTGTGTGTTGGGGTTTT
TATTAAATAAGTCGACATTGTTTGAAGTACATGTTGTATTGTATTACGTG
TTTTTTTTTTTCCTTTTCTGGTCGATTATGGACTTGTAGGAACT back to topCoding sequence (CDS) from alignment at Vu09:37507175..37507718+ >Vigun09g200800.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g200800.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g200800.1; organism=Vigna unguiculata; type=CDS; length=330bp; location=Sequence derived from: Vu09:37507175..37507718+ (Vigna unguiculata ATGAAGAGACAGAAATCTACACCACTCATTAGACAAATACACAGGTCTAT AAAGAAACTGAAGACTCTGATGCACTCTTGGCGAGTGCATTCCACTGTAT CCTCAAGTTTAAAACAAAGATGGTGCAGTTTGTTCCACAAACGAATGAAC CAGCAAAGGTTCCTTGTGGATGAAGAAATCACTGAGGATTATATGCTTCG ATGTAGAACAACAATGGCGTGTGCTTCAGAAGATGATATTGATAAAAGGG CTGAGATTTTTATCGCAAAATTCCGGCGACAACTAAGCTTGGAGAGTATA GCTTATTCTGAAACAAAGTATATTATATAA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term | Definition |
IPR008480 | DUF761_pln |
|