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Transcript Overview
Name | Vigun09g200900.1 |
Unique Name | Vigun09g200900.1_Vu_IT97K-499-35_v1.1 |
Type | mRNA |
Organism | Vigna unguiculata (cowpea) |
Sequence length | 1692 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun09g200900.1 | Vigun09g200900.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
Vigun09g200900.1_Vu_IT97K-499-35_v1.1 | Vigun09g200900.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun09g200900.1.v1.1.five_prime_UTR.2 | Vigun09g200900.1.v1.1.five_prime_UTR.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
Vigun09g200900.1.v1.1.five_prime_UTR.1 | Vigun09g200900.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun09g200900.1.v1.1.CDS.1 | Vigun09g200900.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun09g200900.1.v1.1.three_prime_UTR.1 | Vigun09g200900.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 415..438 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 191..341 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 349..372 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..465 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 133..190 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 14..65 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 84..109 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 380..465 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g200900.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g200900.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g200900.1; organism=Vigna unguiculata; type=mRNA; length=1692bp CACAAATTCACTCTTCCATGAACTTTCTTTTATGAAGGTGAGCTTGGTAA TTATATATGGCAACAAAAACAAAAGACACGAGTGTGGTGGGGAAGGAGAA GAAGGTTCCATCTTCAAATTCTTCAACCACAAGCACCAGGAAGACCGTAA CAAGATCATCCTCAACGAACAAGGGCACTTCAAATCCCACATCGGAGAAA CAAATCCCTAATTATCTAAAACCCACTATAAGTTCAAAACGTCTTGATTC CCACTCTTCTTTCAAGCTCCCTAAGAATGATCCTCCATCAAAACCCACTC TAAACAGAAGAAGATCTCTTGAACCATCATCATCTTCGAGAGTTCACAGA CAAACTCATTCACCTTCTCCTTCAAGGCAACACAAAGCTCTTGTGTCCCC TGGTCCGCGAGAAAGGAATGGTCCACGAGAAAGAAATGTTCCTCTTCGAG CTTCAAGTCTTCCCAATAAAATTACTTCGAAACCTGCTTCTGATAGAGTT ACAAAGACCCCACCAGGAAGAACGCAATCATCAAGTGGGAAAGTTGTTAA GAAGAGTAGTAACACTAATGCTTCTGCTTCAAACCCTAAACATGAGTCAA ATAACATTTCAAAGAGTAGCAAAAGTGCTCAACCAGAAGAAGGTAAAGAG TGTGCAAGTGAAGTGGTTGAAGAAGTGGGAAAAGTGAATAATACAGAAAA ACTGACACATCAAGTAGTTGACTCTGAACATGAAAATGAAAATGAAAATG AACATGGGCATGAGCGTGAGCGTGAGCTTCATCACGAGAAACATGGTAAT GAAGAATGTGAGCAAGATCATGAAGATGAGCAGAAAGGGGATGACCATGG AGAGCAGAAACATGAAGATAATTCTGAAAACCATGATCATAAACACGAGC ATGATTCTGAAGAGCGTGAGCATGATCCTGAAGAGAATGAGCATAATCAT GATGATCATGAAGAGTGTAAACAGAAGCTTGAGGAGACAGGTAAACCTCA TGTTGAAGAGGATAATGAGAGGGACGTTCCTAGTGTTTTGGAAGAAGAGA AACAGAAAGAAAATGATGATACAAATCAAACTGAATGCAACATTCCAGAG ATTCATGATTCAGCAATTAAAGAAGTTGAGGTTAAAGAAGAGGAGGAAAA AACAGAAAGTGGAGTTGTAGAAGAAGTTTGTGAGAGTGAGAGCAACAATG AAGTGGAGGTAGTAAAAGAGAGAAAGGAGGTTGAAGAAGGAAGAAGTGAT GCAGATGTTAAAGATTCAATGGAAGAAGAAAGAGAAAGTAAAGTAGAGAA TGAAGGTGTAGAAAATGAAGCTCAAGAAGAAAAGGTTGCAGAGAATGAAG TTAAAGAAGAAAGAGAAGAAACAAGTGATGTTGTGGAAAAGGGCAAAGAA ACTGAAACTTCTGTATCCAATGATTCCATTGAGGAGAAAGAGAGAAAATT GAAAGCAAGGAGGAATAGTGTAAAAGCATTGGCAGGTGCATTTCAAAATG TCATCGACCATCAAAAATGAACAAAACCATGTGTAAAATATATACGAGAT AGGAGAATGAAGTAGAAAAAAGAAGAACAATACTTAAATTAAACACATTT TAATGTTTGTACCTTTCTTACACAAAGATGGGAAAAACATGTTAAACATT TGTTGGATTTTCTCAGCTAATTGAGTTTCACAAATGTATTCC back to topprotein sequence of Vigun09g200900.1_Vu_IT97K-499-35_v1.1 >Vigun09g200900.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g200900.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g200900.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=488bp MATKTKDTSVVGKEKKVPSSNSSTTSTRKTVTRSSSTNKGTSNPTSEKQI PNYLKPTISSKRLDSHSSFKLPKNDPPSKPTLNRRRSLEPSSSSRVHRQT HSPSPSRQHKALVSPGPRERNGPRERNVPLRASSLPNKITSKPASDRVTK TPPGRTQSSSGKVVKKSSNTNASASNPKHESNNISKSSKSAQPEEGKECA SEVVEEVGKVNNTEKLTHQVVDSEHENENENEHGHERERELHHEKHGNEE CEQDHEDEQKGDDHGEQKHEDNSENHDHKHEHDSEEREHDPEENEHNHDD HEECKQKLEETGKPHVEEDNERDVPSVLEEEKQKENDDTNQTECNIPEIH DSAIKEVEVKEEEEKTESGVVEEVCESESNNEVEVVKERKEVEEGRSDAD VKDSMEEERESKVENEGVENEAQEEKVAENEVKEEREETSDVVEKGKETE TSVSNDSIEEKERKLKARRNSVKALAGAFQNVIDHQK* back to topmRNA from alignment at Vu09:37508091..37510819- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun09g200900.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g200900.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g200900.1; organism=Vigna unguiculata; type=mRNA; length=2729bp; location=Sequence derived from: Vu09:37508091..37510819- (Vigna unguiculata CACAAATTCACTCTTCCATGAACTTTCTTTTATGAAGGTACGTTTTCTGA
ACCTGACTTTGGTTGTTGTAAATTTACTCTTTTTAGCTTCAATTTGCATC
GAGATTTTGAATATTGTTTGCTTCTCCTGCCACCAAAAAAGAAGTGTAAG
GTAATCATTGTGCCACATGCCCATTACTTGTTTTTCTTCTCTTTGCATTT
TCAAGGAACATATTTATTATTTTTAAAACTGTTCACATTCCACACATCAT
GATTAATTGATCATAATTAATTAAGGATATCTCTTCATCTTTTCTTTTCA
TTTGCAATGAATTTGTTAGTGATTAAAAACAAATATTGGGACGATAATAC
ATTAATGTGGAGGATTTCGATGCAAAGAAGGAATATGTAATAATGAGCTT
AGATGTTCAATTATGACAAACTTTCTTATTTTCAGGAGTTTGTATAGATT
TTTTTTTGGATAAAGTTGGAGTAGACTTTTCATGTTATTTTTCTGAGTTT
TTTTTTTATCATTTATTGTAGATACTTTTTTTTAATTAATTGTGATCATG
TCTATGTTGTATCATATGTGATTGAGTTGAACTCGTTTCATTTTTTATTT
GTATGTTCTAAGAAGAAGAAGAAAAAACCAATTGTACACATCATTTTAGG
TTTGTGTAATTTTTTTAATTTTTTTTTGCTGAAAATTGATTTAATCCTCG
TATACATATATATTATAAACACTCAAAATTTCTTAGTCATAATTATGATG
CAGAAAAAAGGCCCCATATTGAGAAATACGATAGAATTAGATTTGCACAA
CAATAAAGCAAACAGAAATAATAATTACTAAGTCTTTTATACAAGAAACA
AAAAAATAAAAGAGAGTGTAAGGTAAGATGGTTGATAACTTTATGAAAGA
GTTTTAAAAAAAGGGTTTTATGAATAATATATCTCAAATAATTTTAAAAA
CAATATTTTGTATAAGAAAACTATTTTATCAAATCTTAATCATCATTTAG
GATATTGAAAAAAAATATAATTTATAATACAACATATTAAGATATGTATG
TTTTTTTTTTTAACATATTTATAGGTGAGCTTGGTAATTATATATGGCAA
CAAAAACAAAAGACACGAGTGTGGTGGGGAAGGAGAAGAAGGTTCCATCT
TCAAATTCTTCAACCACAAGCACCAGGAAGACCGTAACAAGATCATCCTC
AACGAACAAGGGCACTTCAAATCCCACATCGGAGAAACAAATCCCTAATT
ATCTAAAACCCACTATAAGTTCAAAACGTCTTGATTCCCACTCTTCTTTC
AAGCTCCCTAAGAATGATCCTCCATCAAAACCCACTCTAAACAGAAGAAG
ATCTCTTGAACCATCATCATCTTCGAGAGTTCACAGACAAACTCATTCAC
CTTCTCCTTCAAGGCAACACAAAGCTCTTGTGTCCCCTGGTCCGCGAGAA
AGGAATGGTCCACGAGAAAGAAATGTTCCTCTTCGAGCTTCAAGTCTTCC
CAATAAAATTACTTCGAAACCTGCTTCTGATAGAGTTACAAAGACCCCAC
CAGGAAGAACGCAATCATCAAGTGGGAAAGTTGTTAAGAAGAGTAGTAAC
ACTAATGCTTCTGCTTCAAACCCTAAACATGAGTCAAATAACATTTCAAA
GAGTAGCAAAAGTGCTCAACCAGAAGAAGGTAAAGAGTGTGCAAGTGAAG
TGGTTGAAGAAGTGGGAAAAGTGAATAATACAGAAAAACTGACACATCAA
GTAGTTGACTCTGAACATGAAAATGAAAATGAAAATGAACATGGGCATGA
GCGTGAGCGTGAGCTTCATCACGAGAAACATGGTAATGAAGAATGTGAGC
AAGATCATGAAGATGAGCAGAAAGGGGATGACCATGGAGAGCAGAAACAT
GAAGATAATTCTGAAAACCATGATCATAAACACGAGCATGATTCTGAAGA
GCGTGAGCATGATCCTGAAGAGAATGAGCATAATCATGATGATCATGAAG
AGTGTAAACAGAAGCTTGAGGAGACAGGTAAACCTCATGTTGAAGAGGAT
AATGAGAGGGACGTTCCTAGTGTTTTGGAAGAAGAGAAACAGAAAGAAAA
TGATGATACAAATCAAACTGAATGCAACATTCCAGAGATTCATGATTCAG
CAATTAAAGAAGTTGAGGTTAAAGAAGAGGAGGAAAAAACAGAAAGTGGA
GTTGTAGAAGAAGTTTGTGAGAGTGAGAGCAACAATGAAGTGGAGGTAGT
AAAAGAGAGAAAGGAGGTTGAAGAAGGAAGAAGTGATGCAGATGTTAAAG
ATTCAATGGAAGAAGAAAGAGAAAGTAAAGTAGAGAATGAAGGTGTAGAA
AATGAAGCTCAAGAAGAAAAGGTTGCAGAGAATGAAGTTAAAGAAGAAAG
AGAAGAAACAAGTGATGTTGTGGAAAAGGGCAAAGAAACTGAAACTTCTG
TATCCAATGATTCCATTGAGGAGAAAGAGAGAAAATTGAAAGCAAGGAGG
AATAGTGTAAAAGCATTGGCAGGTGCATTTCAAAATGTCATCGACCATCA
AAAATGAACAAAACCATGTGTAAAATATATACGAGATAGGAGAATGAAGT
AGAAAAAAGAAGAACAATACTTAAATTAAACACATTTTAATGTTTGTACC
TTTCTTACACAAAGATGGGAAAAACATGTTAAACATTTGTTGGATTTTCT
CAGCTAATTGAGTTTCACAAATGTATTCC back to topCoding sequence (CDS) from alignment at Vu09:37508091..37510819- >Vigun09g200900.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g200900.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g200900.1; organism=Vigna unguiculata; type=CDS; length=1464bp; location=Sequence derived from: Vu09:37508091..37510819- (Vigna unguiculata ATGGCAACAAAAACAAAAGACACGAGTGTGGTGGGGAAGGAGAAGAAGGT TCCATCTTCAAATTCTTCAACCACAAGCACCAGGAAGACCGTAACAAGAT CATCCTCAACGAACAAGGGCACTTCAAATCCCACATCGGAGAAACAAATC CCTAATTATCTAAAACCCACTATAAGTTCAAAACGTCTTGATTCCCACTC TTCTTTCAAGCTCCCTAAGAATGATCCTCCATCAAAACCCACTCTAAACA GAAGAAGATCTCTTGAACCATCATCATCTTCGAGAGTTCACAGACAAACT CATTCACCTTCTCCTTCAAGGCAACACAAAGCTCTTGTGTCCCCTGGTCC GCGAGAAAGGAATGGTCCACGAGAAAGAAATGTTCCTCTTCGAGCTTCAA GTCTTCCCAATAAAATTACTTCGAAACCTGCTTCTGATAGAGTTACAAAG ACCCCACCAGGAAGAACGCAATCATCAAGTGGGAAAGTTGTTAAGAAGAG TAGTAACACTAATGCTTCTGCTTCAAACCCTAAACATGAGTCAAATAACA TTTCAAAGAGTAGCAAAAGTGCTCAACCAGAAGAAGGTAAAGAGTGTGCA AGTGAAGTGGTTGAAGAAGTGGGAAAAGTGAATAATACAGAAAAACTGAC ACATCAAGTAGTTGACTCTGAACATGAAAATGAAAATGAAAATGAACATG GGCATGAGCGTGAGCGTGAGCTTCATCACGAGAAACATGGTAATGAAGAA TGTGAGCAAGATCATGAAGATGAGCAGAAAGGGGATGACCATGGAGAGCA GAAACATGAAGATAATTCTGAAAACCATGATCATAAACACGAGCATGATT CTGAAGAGCGTGAGCATGATCCTGAAGAGAATGAGCATAATCATGATGAT CATGAAGAGTGTAAACAGAAGCTTGAGGAGACAGGTAAACCTCATGTTGA AGAGGATAATGAGAGGGACGTTCCTAGTGTTTTGGAAGAAGAGAAACAGA AAGAAAATGATGATACAAATCAAACTGAATGCAACATTCCAGAGATTCAT GATTCAGCAATTAAAGAAGTTGAGGTTAAAGAAGAGGAGGAAAAAACAGA AAGTGGAGTTGTAGAAGAAGTTTGTGAGAGTGAGAGCAACAATGAAGTGG AGGTAGTAAAAGAGAGAAAGGAGGTTGAAGAAGGAAGAAGTGATGCAGAT GTTAAAGATTCAATGGAAGAAGAAAGAGAAAGTAAAGTAGAGAATGAAGG TGTAGAAAATGAAGCTCAAGAAGAAAAGGTTGCAGAGAATGAAGTTAAAG AAGAAAGAGAAGAAACAAGTGATGTTGTGGAAAAGGGCAAAGAAACTGAA ACTTCTGTATCCAATGATTCCATTGAGGAGAAAGAGAGAAAATTGAAAGC AAGGAGGAATAGTGTAAAAGCATTGGCAGGTGCATTTCAAAATGTCATCG ACCATCAAAAATGA back to top
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