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Transcript Overview
| Name | Vigun09g200900.1 |
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| Unique Name | Vigun09g200900.1_Vu_IT97K-499-35_v1.1 |
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| Type | mRNA |
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| Organism | Vigna unguiculata (cowpea) |
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| Sequence length | 1692 |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
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| Vigun09g200900.1 | Vigun09g200900.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
| Vigun09g200900.1_Vu_IT97K-499-35_v1.1 | Vigun09g200900.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun09g200900.1.v1.1.five_prime_UTR.2 | Vigun09g200900.1.v1.1.five_prime_UTR.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
| Vigun09g200900.1.v1.1.five_prime_UTR.1 | Vigun09g200900.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
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| Vigun09g200900.1.v1.1.CDS.1 | Vigun09g200900.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun09g200900.1.v1.1.three_prime_UTR.1 | Vigun09g200900.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 415..438 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 191..341 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 349..372 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..465 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 133..190 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 14..65 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 84..109 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 380..465 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g200900.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g200900.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g200900.1; organism=Vigna unguiculata; type=mRNA; length=1692bp
CACAAATTCACTCTTCCATGAACTTTCTTTTATGAAGGTGAGCTTGGTAA
TTATATATGGCAACAAAAACAAAAGACACGAGTGTGGTGGGGAAGGAGAA
GAAGGTTCCATCTTCAAATTCTTCAACCACAAGCACCAGGAAGACCGTAA
CAAGATCATCCTCAACGAACAAGGGCACTTCAAATCCCACATCGGAGAAA
CAAATCCCTAATTATCTAAAACCCACTATAAGTTCAAAACGTCTTGATTC
CCACTCTTCTTTCAAGCTCCCTAAGAATGATCCTCCATCAAAACCCACTC
TAAACAGAAGAAGATCTCTTGAACCATCATCATCTTCGAGAGTTCACAGA
CAAACTCATTCACCTTCTCCTTCAAGGCAACACAAAGCTCTTGTGTCCCC
TGGTCCGCGAGAAAGGAATGGTCCACGAGAAAGAAATGTTCCTCTTCGAG
CTTCAAGTCTTCCCAATAAAATTACTTCGAAACCTGCTTCTGATAGAGTT
ACAAAGACCCCACCAGGAAGAACGCAATCATCAAGTGGGAAAGTTGTTAA
GAAGAGTAGTAACACTAATGCTTCTGCTTCAAACCCTAAACATGAGTCAA
ATAACATTTCAAAGAGTAGCAAAAGTGCTCAACCAGAAGAAGGTAAAGAG
TGTGCAAGTGAAGTGGTTGAAGAAGTGGGAAAAGTGAATAATACAGAAAA
ACTGACACATCAAGTAGTTGACTCTGAACATGAAAATGAAAATGAAAATG
AACATGGGCATGAGCGTGAGCGTGAGCTTCATCACGAGAAACATGGTAAT
GAAGAATGTGAGCAAGATCATGAAGATGAGCAGAAAGGGGATGACCATGG
AGAGCAGAAACATGAAGATAATTCTGAAAACCATGATCATAAACACGAGC
ATGATTCTGAAGAGCGTGAGCATGATCCTGAAGAGAATGAGCATAATCAT
GATGATCATGAAGAGTGTAAACAGAAGCTTGAGGAGACAGGTAAACCTCA
TGTTGAAGAGGATAATGAGAGGGACGTTCCTAGTGTTTTGGAAGAAGAGA
AACAGAAAGAAAATGATGATACAAATCAAACTGAATGCAACATTCCAGAG
ATTCATGATTCAGCAATTAAAGAAGTTGAGGTTAAAGAAGAGGAGGAAAA
AACAGAAAGTGGAGTTGTAGAAGAAGTTTGTGAGAGTGAGAGCAACAATG
AAGTGGAGGTAGTAAAAGAGAGAAAGGAGGTTGAAGAAGGAAGAAGTGAT
GCAGATGTTAAAGATTCAATGGAAGAAGAAAGAGAAAGTAAAGTAGAGAA
TGAAGGTGTAGAAAATGAAGCTCAAGAAGAAAAGGTTGCAGAGAATGAAG
TTAAAGAAGAAAGAGAAGAAACAAGTGATGTTGTGGAAAAGGGCAAAGAA
ACTGAAACTTCTGTATCCAATGATTCCATTGAGGAGAAAGAGAGAAAATT
GAAAGCAAGGAGGAATAGTGTAAAAGCATTGGCAGGTGCATTTCAAAATG
TCATCGACCATCAAAAATGAACAAAACCATGTGTAAAATATATACGAGAT
AGGAGAATGAAGTAGAAAAAAGAAGAACAATACTTAAATTAAACACATTT
TAATGTTTGTACCTTTCTTACACAAAGATGGGAAAAACATGTTAAACATT
TGTTGGATTTTCTCAGCTAATTGAGTTTCACAAATGTATTCC back to topprotein sequence of Vigun09g200900.1_Vu_IT97K-499-35_v1.1 >Vigun09g200900.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g200900.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g200900.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=488bp
MATKTKDTSVVGKEKKVPSSNSSTTSTRKTVTRSSSTNKGTSNPTSEKQI
PNYLKPTISSKRLDSHSSFKLPKNDPPSKPTLNRRRSLEPSSSSRVHRQT
HSPSPSRQHKALVSPGPRERNGPRERNVPLRASSLPNKITSKPASDRVTK
TPPGRTQSSSGKVVKKSSNTNASASNPKHESNNISKSSKSAQPEEGKECA
SEVVEEVGKVNNTEKLTHQVVDSEHENENENEHGHERERELHHEKHGNEE
CEQDHEDEQKGDDHGEQKHEDNSENHDHKHEHDSEEREHDPEENEHNHDD
HEECKQKLEETGKPHVEEDNERDVPSVLEEEKQKENDDTNQTECNIPEIH
DSAIKEVEVKEEEEKTESGVVEEVCESESNNEVEVVKERKEVEEGRSDAD
VKDSMEEERESKVENEGVENEAQEEKVAENEVKEEREETSDVVEKGKETE
TSVSNDSIEEKERKLKARRNSVKALAGAFQNVIDHQK* back to topmRNA from alignment at Vu09:37508091..37510819- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun09g200900.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g200900.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g200900.1; organism=Vigna unguiculata; type=mRNA; length=2729bp; location=Sequence derived from: Vu09:37508091..37510819- (Vigna unguiculata
CACAAATTCACTCTTCCATGAACTTTCTTTTATGAAGGTACGTTTTCTGA
ACCTGACTTTGGTTGTTGTAAATTTACTCTTTTTAGCTTCAATTTGCATC
GAGATTTTGAATATTGTTTGCTTCTCCTGCCACCAAAAAAGAAGTGTAAG
GTAATCATTGTGCCACATGCCCATTACTTGTTTTTCTTCTCTTTGCATTT
TCAAGGAACATATTTATTATTTTTAAAACTGTTCACATTCCACACATCAT
GATTAATTGATCATAATTAATTAAGGATATCTCTTCATCTTTTCTTTTCA
TTTGCAATGAATTTGTTAGTGATTAAAAACAAATATTGGGACGATAATAC
ATTAATGTGGAGGATTTCGATGCAAAGAAGGAATATGTAATAATGAGCTT
AGATGTTCAATTATGACAAACTTTCTTATTTTCAGGAGTTTGTATAGATT
TTTTTTTGGATAAAGTTGGAGTAGACTTTTCATGTTATTTTTCTGAGTTT
TTTTTTTATCATTTATTGTAGATACTTTTTTTTAATTAATTGTGATCATG
TCTATGTTGTATCATATGTGATTGAGTTGAACTCGTTTCATTTTTTATTT
GTATGTTCTAAGAAGAAGAAGAAAAAACCAATTGTACACATCATTTTAGG
TTTGTGTAATTTTTTTAATTTTTTTTTGCTGAAAATTGATTTAATCCTCG
TATACATATATATTATAAACACTCAAAATTTCTTAGTCATAATTATGATG
CAGAAAAAAGGCCCCATATTGAGAAATACGATAGAATTAGATTTGCACAA
CAATAAAGCAAACAGAAATAATAATTACTAAGTCTTTTATACAAGAAACA
AAAAAATAAAAGAGAGTGTAAGGTAAGATGGTTGATAACTTTATGAAAGA
GTTTTAAAAAAAGGGTTTTATGAATAATATATCTCAAATAATTTTAAAAA
CAATATTTTGTATAAGAAAACTATTTTATCAAATCTTAATCATCATTTAG
GATATTGAAAAAAAATATAATTTATAATACAACATATTAAGATATGTATG
TTTTTTTTTTTAACATATTTATAGGTGAGCTTGGTAATTATATATGGCAA
CAAAAACAAAAGACACGAGTGTGGTGGGGAAGGAGAAGAAGGTTCCATCT
TCAAATTCTTCAACCACAAGCACCAGGAAGACCGTAACAAGATCATCCTC
AACGAACAAGGGCACTTCAAATCCCACATCGGAGAAACAAATCCCTAATT
ATCTAAAACCCACTATAAGTTCAAAACGTCTTGATTCCCACTCTTCTTTC
AAGCTCCCTAAGAATGATCCTCCATCAAAACCCACTCTAAACAGAAGAAG
ATCTCTTGAACCATCATCATCTTCGAGAGTTCACAGACAAACTCATTCAC
CTTCTCCTTCAAGGCAACACAAAGCTCTTGTGTCCCCTGGTCCGCGAGAA
AGGAATGGTCCACGAGAAAGAAATGTTCCTCTTCGAGCTTCAAGTCTTCC
CAATAAAATTACTTCGAAACCTGCTTCTGATAGAGTTACAAAGACCCCAC
CAGGAAGAACGCAATCATCAAGTGGGAAAGTTGTTAAGAAGAGTAGTAAC
ACTAATGCTTCTGCTTCAAACCCTAAACATGAGTCAAATAACATTTCAAA
GAGTAGCAAAAGTGCTCAACCAGAAGAAGGTAAAGAGTGTGCAAGTGAAG
TGGTTGAAGAAGTGGGAAAAGTGAATAATACAGAAAAACTGACACATCAA
GTAGTTGACTCTGAACATGAAAATGAAAATGAAAATGAACATGGGCATGA
GCGTGAGCGTGAGCTTCATCACGAGAAACATGGTAATGAAGAATGTGAGC
AAGATCATGAAGATGAGCAGAAAGGGGATGACCATGGAGAGCAGAAACAT
GAAGATAATTCTGAAAACCATGATCATAAACACGAGCATGATTCTGAAGA
GCGTGAGCATGATCCTGAAGAGAATGAGCATAATCATGATGATCATGAAG
AGTGTAAACAGAAGCTTGAGGAGACAGGTAAACCTCATGTTGAAGAGGAT
AATGAGAGGGACGTTCCTAGTGTTTTGGAAGAAGAGAAACAGAAAGAAAA
TGATGATACAAATCAAACTGAATGCAACATTCCAGAGATTCATGATTCAG
CAATTAAAGAAGTTGAGGTTAAAGAAGAGGAGGAAAAAACAGAAAGTGGA
GTTGTAGAAGAAGTTTGTGAGAGTGAGAGCAACAATGAAGTGGAGGTAGT
AAAAGAGAGAAAGGAGGTTGAAGAAGGAAGAAGTGATGCAGATGTTAAAG
ATTCAATGGAAGAAGAAAGAGAAAGTAAAGTAGAGAATGAAGGTGTAGAA
AATGAAGCTCAAGAAGAAAAGGTTGCAGAGAATGAAGTTAAAGAAGAAAG
AGAAGAAACAAGTGATGTTGTGGAAAAGGGCAAAGAAACTGAAACTTCTG
TATCCAATGATTCCATTGAGGAGAAAGAGAGAAAATTGAAAGCAAGGAGG
AATAGTGTAAAAGCATTGGCAGGTGCATTTCAAAATGTCATCGACCATCA
AAAATGAACAAAACCATGTGTAAAATATATACGAGATAGGAGAATGAAGT
AGAAAAAAGAAGAACAATACTTAAATTAAACACATTTTAATGTTTGTACC
TTTCTTACACAAAGATGGGAAAAACATGTTAAACATTTGTTGGATTTTCT
CAGCTAATTGAGTTTCACAAATGTATTCC back to topCoding sequence (CDS) from alignment at Vu09:37508091..37510819- >Vigun09g200900.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g200900.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g200900.1; organism=Vigna unguiculata; type=CDS; length=1464bp; location=Sequence derived from: Vu09:37508091..37510819- (Vigna unguiculata
ATGGCAACAAAAACAAAAGACACGAGTGTGGTGGGGAAGGAGAAGAAGGT
TCCATCTTCAAATTCTTCAACCACAAGCACCAGGAAGACCGTAACAAGAT
CATCCTCAACGAACAAGGGCACTTCAAATCCCACATCGGAGAAACAAATC
CCTAATTATCTAAAACCCACTATAAGTTCAAAACGTCTTGATTCCCACTC
TTCTTTCAAGCTCCCTAAGAATGATCCTCCATCAAAACCCACTCTAAACA
GAAGAAGATCTCTTGAACCATCATCATCTTCGAGAGTTCACAGACAAACT
CATTCACCTTCTCCTTCAAGGCAACACAAAGCTCTTGTGTCCCCTGGTCC
GCGAGAAAGGAATGGTCCACGAGAAAGAAATGTTCCTCTTCGAGCTTCAA
GTCTTCCCAATAAAATTACTTCGAAACCTGCTTCTGATAGAGTTACAAAG
ACCCCACCAGGAAGAACGCAATCATCAAGTGGGAAAGTTGTTAAGAAGAG
TAGTAACACTAATGCTTCTGCTTCAAACCCTAAACATGAGTCAAATAACA
TTTCAAAGAGTAGCAAAAGTGCTCAACCAGAAGAAGGTAAAGAGTGTGCA
AGTGAAGTGGTTGAAGAAGTGGGAAAAGTGAATAATACAGAAAAACTGAC
ACATCAAGTAGTTGACTCTGAACATGAAAATGAAAATGAAAATGAACATG
GGCATGAGCGTGAGCGTGAGCTTCATCACGAGAAACATGGTAATGAAGAA
TGTGAGCAAGATCATGAAGATGAGCAGAAAGGGGATGACCATGGAGAGCA
GAAACATGAAGATAATTCTGAAAACCATGATCATAAACACGAGCATGATT
CTGAAGAGCGTGAGCATGATCCTGAAGAGAATGAGCATAATCATGATGAT
CATGAAGAGTGTAAACAGAAGCTTGAGGAGACAGGTAAACCTCATGTTGA
AGAGGATAATGAGAGGGACGTTCCTAGTGTTTTGGAAGAAGAGAAACAGA
AAGAAAATGATGATACAAATCAAACTGAATGCAACATTCCAGAGATTCAT
GATTCAGCAATTAAAGAAGTTGAGGTTAAAGAAGAGGAGGAAAAAACAGA
AAGTGGAGTTGTAGAAGAAGTTTGTGAGAGTGAGAGCAACAATGAAGTGG
AGGTAGTAAAAGAGAGAAAGGAGGTTGAAGAAGGAAGAAGTGATGCAGAT
GTTAAAGATTCAATGGAAGAAGAAAGAGAAAGTAAAGTAGAGAATGAAGG
TGTAGAAAATGAAGCTCAAGAAGAAAAGGTTGCAGAGAATGAAGTTAAAG
AAGAAAGAGAAGAAACAAGTGATGTTGTGGAAAAGGGCAAAGAAACTGAA
ACTTCTGTATCCAATGATTCCATTGAGGAGAAAGAGAGAAAATTGAAAGC
AAGGAGGAATAGTGTAAAAGCATTGGCAGGTGCATTTCAAAATGTCATCG
ACCATCAAAAATGA back to top
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