Vigun09g206300.1

Transcript Overview
NameVigun09g206300.1
Unique NameVigun09g206300.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length957
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu09supercontigVu09:38088842..38090528 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuL377Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuL109Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
psvuL494Pisum sativum Cameor genome v1aPisum sativum
psvuL649Pisum sativum Cameor genome v1aPisum sativum
pvvuL068Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crvuL453Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvuL857Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL801Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL347Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caivuL0498Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivuL0614Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavuL434Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuL657Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuL0152Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0062Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0249Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0321Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0370Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0761Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1018Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL085Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL538Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR672Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR699Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL326Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvuL332Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL304Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvuL308Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL398Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL460Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL418Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL419Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL594Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR446Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR450Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR463Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL317Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL403Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL262Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL478Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL606Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL331Cicer arietinum
carvuL418Cicer arietinum
ccavuL173Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL336Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL447Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR707Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR726Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR750Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR761Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR783Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR774Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR782Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR815Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR845Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL084Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL247Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL294Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL097Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL265Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL309Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL066Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL344Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL707Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR521Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR527Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
jg55451.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Va04G062870.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-TanjilR_13991Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigan.02G084200.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vfaba.Hedin2.R1.2g186920.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-XM_014644850.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
LR48_mrnaVigan04g215100Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Cr_03015.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
evm.model.Chr09.1643Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigst.02G065000.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vum_02G00689.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Psat05G0098600-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
PvulFLAVERTChr09.686Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Ca_15029.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
XM_058929857.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vfaba.Tiffany.R1.2g150760.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat5g027160.1Pisum sativum Cameor genome v1aPisum sativum
rna-KK1_042305Cajanus cajan Asha genome v1.0Cajanus cajan
Ca_01786Cicer arietinum CDC Frontier genome v1.0Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun09g206300.2Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun09g206300Vigun09g206300_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g206300.1Vigun09g206300.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun09g206300.1_Vu_IT97K-499-35_v1.1Vigun09g206300.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g206300.1.v1.1.CDS.6Vigun09g206300.1.v1.1.CDS.6_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun09g206300.1.v1.1.CDS.5Vigun09g206300.1.v1.1.CDS.5_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun09g206300.1.v1.1.CDS.4Vigun09g206300.1.v1.1.CDS.4_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun09g206300.1.v1.1.CDS.3Vigun09g206300.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun09g206300.1.v1.1.CDS.2Vigun09g206300.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun09g206300.1.v1.1.CDS.1Vigun09g206300.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g206300.1.v1.1.three_prime_UTR.1Vigun09g206300.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g206300.1.v1.1.five_prime_UTR.1Vigun09g206300.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Vigun09g206300.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun09g206300.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g206300.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g206300.1; organism=Vigna unguiculata; type=mRNA; length=957bp
AGAGAGACCATAGACGTCGTGCTCAGAAGCTGGAAGAGAAAAGCGTTCAT
CTCGATCTTCAAATTTCTTCTCTTCTTCTCCTTCTCCCCTTTCGTATCAG
AGCCTTGAACGATGTCGTTTGGATCGTCTCTCTTGTCGCATCCGCATTCC
GTTCGATTCTTGTTCAATAACACCGGAAACTCTCGCTTCAAAGCCGCTGC
CGAAGTTCCCGATTTCCTCTCCGAGGATTGGTTCAAATCTCGCAAGAAAA
GACCCTTCGGTCCACGATTAGATTTTAGTGCAGAAGATGCTGTGCATTAC
CAGCTCGAAGCCTTGAAGTATAACGACCAACCTCGTCAAGACTATGGAAT
CGAGGTTATGTACAGGTTCGCCGGATTTGATCCTTTTGAAAGGTCTACCT
ATTTTGGGCCTTTCTTTGATTTGGGCCAGTTTGAAAGGTTTAGGCGTATT
TTTCACCACTCTACTTATCGAGTATTGCTAGGTCACAAGGAGAGAAAGAT
CATGAGCACTTTGTTTGTCGAGGAGAACAAATACAAGCAGCGGGTTTGGA
TTCGTGGAAGTCGACCGGAGGAAGAGGAGATATTTCAATTTACAATGGTT
CAGAGGGTTGGTGGATGCTGGGATGGTTACTGGTTGACAGAATCTCTGCT
TCACGACACGGATACATTTTCTGGCGGATTAGCTTATTAAGAATCGTCTA
ATGCAGGAATCAGGTTCACGAGATTACTGTCAAAAGCATGAAATGATCTG
CAATAACTATCCTAATCTGTAAAATTTGGCCATGGTTAATATGTAAAATT
TGATTATGGTATGGCATCAATAGAAATAAAATAACATCCCACGGCACCAC
ATGTACTTACAAAATATGTTCTTAGATATTAAAATTCTATATTTTACAAT
TGCTTGCCCAAAGACGCAAACAACTGCGTAATTATGGTAGTCTTTTTTTA
TGGTGCT
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protein sequence of Vigun09g206300.1_Vu_IT97K-499-35_v1.1

>Vigun09g206300.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g206300.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g206300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=193bp
MSFGSSLLSHPHSVRFLFNNTGNSRFKAAAEVPDFLSEDWFKSRKKRPFG
PRLDFSAEDAVHYQLEALKYNDQPRQDYGIEVMYRFAGFDPFERSTYFGP
FFDLGQFERFRRIFHHSTYRVLLGHKERKIMSTLFVEENKYKQRVWIRGS
RPEEEEIFQFTMVQRVGGCWDGYWLTESLLHDTDTFSGGLAY*
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mRNA from alignment at Vu09:38088842..38090528-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun09g206300.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g206300.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g206300.1; organism=Vigna unguiculata; type=mRNA; length=1687bp; location=Sequence derived from: Vu09:38088842..38090528- (Vigna unguiculata
AGAGAGACCATAGACGTCGTGCTCAGAAGCTGGAAGAGAAAAGCGTTCAT
CTCGATCTTCAAATTTCTTCTCTTCTTCTCCTTCTCCCCTTTCGTATCAG
AGCCTTGAACGATGTCGTTTGGATCGTCTCTCTTGTCGCATCCGCATTCC
GTTCGATTCTTGTTCAATAACACCGGAAACTCTCGCTTCAAAGCCGCTGC
CGAAGTTCCCGATTTCCTCTCCGAGGATTGGTACCTATTTTTCCTTACAT
ATATTCATCCAATTCCATTTTATTCTCCAATATTCCGATTCCAACACCGC
CTGCAGGTTCAAATCTCGCAAGAAAAGACCCTTCGGTCCACGATTAGATG
TAATAATCACTATCCACCACTTCTCCTCTTATCTTTCCTTTTTCTTTGTT
CCTTTTCTGTTTAATCAATGTTTGGTATAGTTTAGTGCAGAAGATGCTGT
GCATTACCAGCTCGAAGCCTTGAAGTATAACGACCAACCTCGTCAAGACT
ATGGAATCGAGGTTATGTACAGGTTCGCCGGATTTGATCCTTTTGAAAGG
TCTACCTATTTTGGGCCTTTCTTTGATTTGGGCCAGGTATGTTAAAATTC
TGTTCTTCTTTGAAAGTATTTACAGGAAAATTATCAACTTCTGCAGTAAA
GTCATATTAATAGTAATTTTTTATTACTTCATCGTGTAAAACTTCTGCAT
ACTGCACATAACACAATCATGGTTACTTTACTATTATTGAAATATTTGTA
TGTTGAAATTCATGCTAAAGATCAATACACCTCTGCATGTGCAGTTTGAA
AGGTTTAGGCGTATTTTTCACCACTCTACTTATCGAGTATTGCTAGGTCA
CAAGGAGAGAAAGATCATGAGCACTTTGTTTGTCGAGGAGGTAGAATGTT
TGTTCTTGTTCAATTTTTTTTTTCTGTATTATCTTAAAAAACTGATGTTA
TATGGAGTGATGAGCTTCAAATCAAACAGAACAAATACAAGCAGCGGGTT
TGGATTCGTGGAAGTCGACCGGAGGAAGAGGAGATATTTCAATTTACAAT
GGTTCAGGTTTGGTCACGATTTCTTCCGCTACATCGTATCATCGTATTCA
TGTTCGTGATGATTCAATATCGTGTTTGGTTCATCTTGTTTGCAAAAATT
ATTGTTTATTTTTGCTGGAAATACGTAATTAGGCATTTTTGTTAACTCTG
GATTACTGCAGCAGTATTTAGCTGGTATAATTCTTTTCTTAATTCAATGA
TAGATATTTCAATTATTGATTTCTTAAATTAATTATAGATTAACCATGTA
TGCATCTGATGTTTGTTTGTTTGTCACTGGCAGAGGGTTGGTGGATGCTG
GGATGGTTACTGGTTGACAGAATCTCTGCTTCACGACACGGATACATTTT
CTGGCGGATTAGCTTATTAAGAATCGTCTAATGCAGGAATCAGGTTCACG
AGATTACTGTCAAAAGCATGAAATGATCTGCAATAACTATCCTAATCTGT
AAAATTTGGCCATGGTTAATATGTAAAATTTGATTATGGTATGGCATCAA
TAGAAATAAAATAACATCCCACGGCACCACATGTACTTACAAAATATGTT
CTTAGATATTAAAATTCTATATTTTACAATTGCTTGCCCAAAGACGCAAA
CAACTGCGTAATTATGGTAGTCTTTTTTTATGGTGCT
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Coding sequence (CDS) from alignment at Vu09:38088842..38090528-

>Vigun09g206300.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g206300.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g206300.1; organism=Vigna unguiculata; type=CDS; length=579bp; location=Sequence derived from: Vu09:38088842..38090528- (Vigna unguiculata
ATGTCGTTTGGATCGTCTCTCTTGTCGCATCCGCATTCCGTTCGATTCTT
GTTCAATAACACCGGAAACTCTCGCTTCAAAGCCGCTGCCGAAGTTCCCG
ATTTCCTCTCCGAGGATTGGTTCAAATCTCGCAAGAAAAGACCCTTCGGT
CCACGATTAGATTTTAGTGCAGAAGATGCTGTGCATTACCAGCTCGAAGC
CTTGAAGTATAACGACCAACCTCGTCAAGACTATGGAATCGAGGTTATGT
ACAGGTTCGCCGGATTTGATCCTTTTGAAAGGTCTACCTATTTTGGGCCT
TTCTTTGATTTGGGCCAGTTTGAAAGGTTTAGGCGTATTTTTCACCACTC
TACTTATCGAGTATTGCTAGGTCACAAGGAGAGAAAGATCATGAGCACTT
TGTTTGTCGAGGAGAACAAATACAAGCAGCGGGTTTGGATTCGTGGAAGT
CGACCGGAGGAAGAGGAGATATTTCAATTTACAATGGTTCAGAGGGTTGG
TGGATGCTGGGATGGTTACTGGTTGACAGAATCTCTGCTTCACGACACGG
ATACATTTTCTGGCGGATTAGCTTATTAA
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