Transcript Overview
Name Vigun09g207400.1 Unique Name Vigun09g207400.1_Vu_IT97K-499-35_v1.1 Type mRNA Organism Vigna unguiculata (cowpea) Sequence length 1484
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Vigun09g207400.1 Vigun09g207400.1_Vu_IT97K-499-35_v1.1-protein Vigna unguiculata polypeptide Vigun09g207400.1_Vu_IT97K-499-35_v1.1 Vigun09g207400.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata polypeptide
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun09g207400.1.v1.1.five_prime_UTR.1 Vigun09g207400.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata five_prime_UTR
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun09g207400.1.v1.1.CDS.1 Vigun09g207400.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun09g207400.1.v1.1.three_prime_UTR.1 Vigun09g207400.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata three_prime_UTR
Homology
BLAST of Vigun09g207400.1 vs. DB:Swiss
Match:
Y3720_ARATH (UPF0481 protein At3g47200 OS=Arabidopsis thaliana OX=3702 GN=At3g47200 PE=2 SV=1)
HSP 1 Score: 137.117 bits (344), Expect = 1.349e-34
Identity = 106/358 (29.61%), Postives = 169/358 (47.21%), Query Frame = 1
Query: 70 EECCIYKVPLLIRQINQEAYTPKIVSIGPYHHNNSHLQNMENHKLTYCKSFLE---RTNTSMESWIHYIAGKELHIRQCYLDVLEFSSKELVEMICVDSGFILELFWITHYKI---YDKYLSTPWFRLMILYDLVLLENQLPFFVLHHLFCLSIADGNSDIPSFIRLTFKYFDLFNRLDLKPNLIT-----TCHHFTDLLRHFHLCGRKQTTRT-----------GQWPHIPSV-----------TKLSEAGIRFGKHESK--CYLNLSFSRKVLKIPRFTVDDGTEILFRNMVALEQFHYPNDAYITEYALVLQYLVNTGKDVDILVKAG-ILKNFLGDSDSAAERTKRLCRNILLK 1035
E CCI++VP +N +AY PK+VSIGPYH+ HLQ ++ HK + FL+ + + + + E IR+ Y + L+ + +L+ M+ +D FIL +F I I D S PW I DL+LLENQ+PFFVL L+ S +SD+ R+ F +F N +D + + H DL+R L ++ + G+ ++PSV +L GI+F SK LN+ + L+IP+ D F N VA EQF+ + IT Y + + L+N +DV L I++N G ++ +E K + ++++ +
Sbjct: 44 ESCCIFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDEAKKKDVEENVLVKAVVDLEDKIRKSYSEELK-TGHDLMFMMVLDGCFILMVFLIMSGNIELSEDPIFSIPWLLSSIQSDLLLLENQVPFFVLQTLYVGSKIGVSSDLN---RIAFHFFK--NPIDKEGSYWEKHRNYKAKHLLDLIRETFLPNTSESDKASSPHVQVQLHEGKSGNVPSVDSKAVPLILSAKRLRLQGIKFRLRRSKEDSILNVRLKKNKLQIPQLRFDGFISSFFLNCVAFEQFYTDSSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIENHFGSNNEVSEFFKTISKDVVFE 395
BLAST of Vigun09g207400.1 vs. DB:Swiss
Match:
Y3264_ARATH (Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana OX=3702 GN=At3g02645 PE=3 SV=1)
HSP 1 Score: 71.633 bits (174), Expect = 4.097e-12
Identity = 42/140 (30.00%), Postives = 72/140 (51.43%), Query Frame = 1
Query: 76 CCIYKVPLLIRQINQEAYTPKIVSIGPYHHNNSHLQNMENHKLTYCKSFLERTNT-SMESWIHYIAGKELHIRQCYLDVLEFSSKELVEMICVDSGFILELFWITHYKIYDKYLSTPWFRLMILYDLVLLENQLPFFVLH 492
I+ VP + + ++YTP VSIGPYH L ME +KL + + N+ + + E+ IR CY + F+ + L+ ++ VDS F++E I ++ + ++ IL D++++ENQ+P FVL
Sbjct: 43 VSIFNVPKALMCSHPDSYTPHRVSIGPYHCLKPELHEMERYKLMIARKIRNQYNSFRFHDLVEKLQSMEIKIRACYHKYIGFNGETLLWIMAVDSSFLIEFLKIYSFRKVETLINRVGHN-EILRDIMMIENQIPLFVLR 181
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
200 400 600 800 1000 1200 1400 Expect = 3.5E-104 / Score = 349.2 Sequence PF03140
IPR Term IPR Description Source Source Term Source Description Alignment
IPR004158 Protein of unknown function DUF247, plant PFAM PF03140 DUF247 coord: 28..396
Sequences
The
following sequences are available for this feature:
mRNA sequence
>Vigun09g207400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g207400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g207400.1; organism=Vigna unguiculata; type=mRNA; length=1484bp back to top protein sequence of Vigun09g207400.1_Vu_IT97K-499-35_v1.1
>Vigun09g207400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g207400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g207400.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=412bp back to top mRNA from alignment at Vu09:38206489..38207972-
Legend: five_prime_UTR polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun09g207400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g207400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g207400.1; organism=Vigna unguiculata; type=mRNA; length=1484bp; location=Sequence derived from: Vu09:38206489..38207972- (Vigna unguiculataTTTATCTCCACCATAAGAGACGAAACGTGCATGATTGACATATGATAAAT
ACATGGATCAGCCACAATGTGATAATTTCATCATTTTAATTCTGGTTTTG
GTTTCTGGACTCTACCTTGTTCC ATGATGAACATGGACGATGTTGTGATC
CATATTCAAGGAATGCTGGAGAAAGCAAAGCCACCCATATCCGAAGAGTG
TTGCATCTATAAAGTACCTTTACTTATTCGCCAAATCAACCAAGAAGCTT
ACACCCCAAAGATTGTTTCCATAGGCCCTTATCACCATAACAACTCTCAT
CTTCAGAACATGGAAAACCACAAACTAACCTATTGCAAGTCATTTCTTGA
ACGAACTAACACAAGCATGGAAAGTTGGATCCATTATATAGCAGGTAAAG
AGCTCCATATCCGTCAATGTTACTTAGACGTACTTGAGTTTAGCTCGAAA
GAACTTGTAGAGATGATATGTGTGGATTCAGGATTTATACTGGAACTCTT
TTGGATAACTCACTATAAGATATATGACAAGTATCTTTCAACACCATGGT
TTCGACTTATGATATTATATGATCTGGTGTTGCTTGAGAACCAACTTCCT
TTTTTCGTTCTTCACCATCTCTTCTGTCTATCTATTGCCGATGGTAACAG
TGACATTCCTTCATTCATCCGGCTCACATTTAAATACTTTGACTTATTCA
ATAGGTTAGATTTGAAACCTAATCTTATCACAACATGTCATCACTTCACA
GATTTGTTACGACATTTTCACTTATGTGGAAGAAAACAAACTACAAGGAC
TGGCCAATGGCCGCATATTCCTAGTGTTACTAAGTTGTCAGAAGCAGGAA
TAAGGTTTGGAAAGCACGAAAGTAAGTGCTATCTAAACTTGAGTTTTTCA
AGAAAGGTTCTTAAAATACCAAGATTCACGGTGGATGATGGTACTGAAAT
TTTGTTTCGCAACATGGTGGCTTTGGAGCAGTTTCACTATCCTAACGATG
CCTACATAACAGAGTATGCTCTTGTTCTGCAATACCTAGTAAACACGGGT
AAGGATGTGGATATACTCGTTAAAGCGGGAATTTTGAAGAACTTTTTAGG
GGACAGTGATTCTGCGGCCGAGAGGACTAAACGTCTTTGCAGAAATATCC
TTCTCAAAGATTTTAGTTCTGATTACGTTTCTTTATGGCAAGACTTGGAC
GCTTCGTATAAAAGTCGTCGTCTTAAGTTGAAGTCAACTCTTAGGCGTGA
TTACTGTAAAAGTCCTTGGCAAACCGCTGCTACCATTGCTGCAATCGTTG
TTCTTATCCTCTCTTTTGTTCAAACAATTTGCTCAATTTGGCAGATAAAA
CAATCTTAG AATGTCTTACATCTTCGAAGACATTGTCAATCATTGATCTT
CTTCCTTGTTTATATGTTTTTTCTTATTGTATCCACATTCTCTAGTTTAT
CACTTGATAGAAACTTAATTCTCCTTTATATTTG back to top Coding sequence (CDS) from alignment at Vu09:38206489..38207972-
>Vigun09g207400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g207400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g207400.1; organism=Vigna unguiculata; type=CDS; length=1236bp; location=Sequence derived from: Vu09:38206489..38207972- (Vigna unguiculata back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term Definition
IPR004158 DUF247_pln
