|
|
Transcript Overview
| Name | Vigun09g207400.1 |
|---|
| Unique Name | Vigun09g207400.1_Vu_IT97K-499-35_v1.1 |
|---|
| Type | mRNA |
|---|
| Organism | Vigna unguiculata (cowpea) |
|---|
| Sequence length | 1484 |
|---|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun09g207400.1 | Vigun09g207400.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
| Vigun09g207400.1_Vu_IT97K-499-35_v1.1 | Vigun09g207400.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun09g207400.1.v1.1.five_prime_UTR.1 | Vigun09g207400.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun09g207400.1.v1.1.CDS.1 | Vigun09g207400.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun09g207400.1.v1.1.three_prime_UTR.1 | Vigun09g207400.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
Homology
BLAST of Vigun09g207400.1 vs. DB:Swiss
Match: Y3720_ARATH (UPF0481 protein At3g47200 OS=Arabidopsis thaliana OX=3702 GN=At3g47200 PE=2 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.349e-34 Identity = 106/358 (29.61%), Postives = 169/358 (47.21%), Query Frame = 1
Query: 70 EECCIYKVPLLIRQINQEAYTPKIVSIGPYHHNNSHLQNMENHKLTYCKSFLE---RTNTSMESWIHYIAGKELHIRQCYLDVLEFSSKELVEMICVDSGFILELFWITHYKI---YDKYLSTPWFRLMILYDLVLLENQLPFFVLHHLFCLSIADGNSDIPSFIRLTFKYFDLFNRLDLKPNLIT-----TCHHFTDLLRHFHLCGRKQTTRT-----------GQWPHIPSV-----------TKLSEAGIRFGKHESK--CYLNLSFSRKVLKIPRFTVDDGTEILFRNMVALEQFHYPNDAYITEYALVLQYLVNTGKDVDILVKAG-ILKNFLGDSDSAAERTKRLCRNILLK 1035
E CCI++VP +N +AY PK+VSIGPYH+ HLQ ++ HK + FL+ + + + + E IR+ Y + L+ + +L+ M+ +D FIL +F I I D S PW I DL+LLENQ+PFFVL L+ S +SD+ R+ F +F N +D + + H DL+R L ++ + G+ ++PSV +L GI+F SK LN+ + L+IP+ D F N VA EQF+ + IT Y + + L+N +DV L I++N G ++ +E K + ++++ +
Sbjct: 44 ESCCIFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDEAKKKDVEENVLVKAVVDLEDKIRKSYSEELK-TGHDLMFMMVLDGCFILMVFLIMSGNIELSEDPIFSIPWLLSSIQSDLLLLENQVPFFVLQTLYVGSKIGVSSDLN---RIAFHFFK--NPIDKEGSYWEKHRNYKAKHLLDLIRETFLPNTSESDKASSPHVQVQLHEGKSGNVPSVDSKAVPLILSAKRLRLQGIKFRLRRSKEDSILNVRLKKNKLQIPQLRFDGFISSFFLNCVAFEQFYTDSSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIENHFGSNNEVSEFFKTISKDVVFE 395
BLAST of Vigun09g207400.1 vs. DB:Swiss
Match: Y3264_ARATH (Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana OX=3702 GN=At3g02645 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.097e-12 Identity = 42/140 (30.00%), Postives = 72/140 (51.43%), Query Frame = 1
Query: 76 CCIYKVPLLIRQINQEAYTPKIVSIGPYHHNNSHLQNMENHKLTYCKSFLERTNT-SMESWIHYIAGKELHIRQCYLDVLEFSSKELVEMICVDSGFILELFWITHYKIYDKYLSTPWFRLMILYDLVLLENQLPFFVLH 492
I+ VP + + ++YTP VSIGPYH L ME +KL + + N+ + + E+ IR CY + F+ + L+ ++ VDS F++E I ++ + ++ IL D++++ENQ+P FVL
Sbjct: 43 VSIFNVPKALMCSHPDSYTPHRVSIGPYHCLKPELHEMERYKLMIARKIRNQYNSFRFHDLVEKLQSMEIKIRACYHKYIGFNGETLLWIMAVDSSFLIEFLKIYSFRKVETLINRVGHN-EILRDIMMIENQIPLFVLR 181
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR004158 | Protein of unknown function DUF247, plant | PFAM | PF03140 | DUF247 | coord: 28..396
e-value: 3.5E-104
score: 349.2 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g207400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g207400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g207400.1; organism=Vigna unguiculata; type=mRNA; length=1484bp
TTTATCTCCACCATAAGAGACGAAACGTGCATGATTGACATATGATAAAT
ACATGGATCAGCCACAATGTGATAATTTCATCATTTTAATTCTGGTTTTG
GTTTCTGGACTCTACCTTGTTCCATGATGAACATGGACGATGTTGTGATC
CATATTCAAGGAATGCTGGAGAAAGCAAAGCCACCCATATCCGAAGAGTG
TTGCATCTATAAAGTACCTTTACTTATTCGCCAAATCAACCAAGAAGCTT
ACACCCCAAAGATTGTTTCCATAGGCCCTTATCACCATAACAACTCTCAT
CTTCAGAACATGGAAAACCACAAACTAACCTATTGCAAGTCATTTCTTGA
ACGAACTAACACAAGCATGGAAAGTTGGATCCATTATATAGCAGGTAAAG
AGCTCCATATCCGTCAATGTTACTTAGACGTACTTGAGTTTAGCTCGAAA
GAACTTGTAGAGATGATATGTGTGGATTCAGGATTTATACTGGAACTCTT
TTGGATAACTCACTATAAGATATATGACAAGTATCTTTCAACACCATGGT
TTCGACTTATGATATTATATGATCTGGTGTTGCTTGAGAACCAACTTCCT
TTTTTCGTTCTTCACCATCTCTTCTGTCTATCTATTGCCGATGGTAACAG
TGACATTCCTTCATTCATCCGGCTCACATTTAAATACTTTGACTTATTCA
ATAGGTTAGATTTGAAACCTAATCTTATCACAACATGTCATCACTTCACA
GATTTGTTACGACATTTTCACTTATGTGGAAGAAAACAAACTACAAGGAC
TGGCCAATGGCCGCATATTCCTAGTGTTACTAAGTTGTCAGAAGCAGGAA
TAAGGTTTGGAAAGCACGAAAGTAAGTGCTATCTAAACTTGAGTTTTTCA
AGAAAGGTTCTTAAAATACCAAGATTCACGGTGGATGATGGTACTGAAAT
TTTGTTTCGCAACATGGTGGCTTTGGAGCAGTTTCACTATCCTAACGATG
CCTACATAACAGAGTATGCTCTTGTTCTGCAATACCTAGTAAACACGGGT
AAGGATGTGGATATACTCGTTAAAGCGGGAATTTTGAAGAACTTTTTAGG
GGACAGTGATTCTGCGGCCGAGAGGACTAAACGTCTTTGCAGAAATATCC
TTCTCAAAGATTTTAGTTCTGATTACGTTTCTTTATGGCAAGACTTGGAC
GCTTCGTATAAAAGTCGTCGTCTTAAGTTGAAGTCAACTCTTAGGCGTGA
TTACTGTAAAAGTCCTTGGCAAACCGCTGCTACCATTGCTGCAATCGTTG
TTCTTATCCTCTCTTTTGTTCAAACAATTTGCTCAATTTGGCAGATAAAA
CAATCTTAGAATGTCTTACATCTTCGAAGACATTGTCAATCATTGATCTT
CTTCCTTGTTTATATGTTTTTTCTTATTGTATCCACATTCTCTAGTTTAT
CACTTGATAGAAACTTAATTCTCCTTTATATTTG back to topprotein sequence of Vigun09g207400.1_Vu_IT97K-499-35_v1.1 >Vigun09g207400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g207400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g207400.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=412bp
MMNMDDVVIHIQGMLEKAKPPISEECCIYKVPLLIRQINQEAYTPKIVSI
GPYHHNNSHLQNMENHKLTYCKSFLERTNTSMESWIHYIAGKELHIRQCY
LDVLEFSSKELVEMICVDSGFILELFWITHYKIYDKYLSTPWFRLMILYD
LVLLENQLPFFVLHHLFCLSIADGNSDIPSFIRLTFKYFDLFNRLDLKPN
LITTCHHFTDLLRHFHLCGRKQTTRTGQWPHIPSVTKLSEAGIRFGKHES
KCYLNLSFSRKVLKIPRFTVDDGTEILFRNMVALEQFHYPNDAYITEYAL
VLQYLVNTGKDVDILVKAGILKNFLGDSDSAAERTKRLCRNILLKDFSSD
YVSLWQDLDASYKSRRLKLKSTLRRDYCKSPWQTAATIAAIVVLILSFVQ
TICSIWQIKQS* back to topmRNA from alignment at Vu09:38206489..38207972- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun09g207400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g207400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g207400.1; organism=Vigna unguiculata; type=mRNA; length=1484bp; location=Sequence derived from: Vu09:38206489..38207972- (Vigna unguiculata
TTTATCTCCACCATAAGAGACGAAACGTGCATGATTGACATATGATAAAT
ACATGGATCAGCCACAATGTGATAATTTCATCATTTTAATTCTGGTTTTG
GTTTCTGGACTCTACCTTGTTCCATGATGAACATGGACGATGTTGTGATC
CATATTCAAGGAATGCTGGAGAAAGCAAAGCCACCCATATCCGAAGAGTG
TTGCATCTATAAAGTACCTTTACTTATTCGCCAAATCAACCAAGAAGCTT
ACACCCCAAAGATTGTTTCCATAGGCCCTTATCACCATAACAACTCTCAT
CTTCAGAACATGGAAAACCACAAACTAACCTATTGCAAGTCATTTCTTGA
ACGAACTAACACAAGCATGGAAAGTTGGATCCATTATATAGCAGGTAAAG
AGCTCCATATCCGTCAATGTTACTTAGACGTACTTGAGTTTAGCTCGAAA
GAACTTGTAGAGATGATATGTGTGGATTCAGGATTTATACTGGAACTCTT
TTGGATAACTCACTATAAGATATATGACAAGTATCTTTCAACACCATGGT
TTCGACTTATGATATTATATGATCTGGTGTTGCTTGAGAACCAACTTCCT
TTTTTCGTTCTTCACCATCTCTTCTGTCTATCTATTGCCGATGGTAACAG
TGACATTCCTTCATTCATCCGGCTCACATTTAAATACTTTGACTTATTCA
ATAGGTTAGATTTGAAACCTAATCTTATCACAACATGTCATCACTTCACA
GATTTGTTACGACATTTTCACTTATGTGGAAGAAAACAAACTACAAGGAC
TGGCCAATGGCCGCATATTCCTAGTGTTACTAAGTTGTCAGAAGCAGGAA
TAAGGTTTGGAAAGCACGAAAGTAAGTGCTATCTAAACTTGAGTTTTTCA
AGAAAGGTTCTTAAAATACCAAGATTCACGGTGGATGATGGTACTGAAAT
TTTGTTTCGCAACATGGTGGCTTTGGAGCAGTTTCACTATCCTAACGATG
CCTACATAACAGAGTATGCTCTTGTTCTGCAATACCTAGTAAACACGGGT
AAGGATGTGGATATACTCGTTAAAGCGGGAATTTTGAAGAACTTTTTAGG
GGACAGTGATTCTGCGGCCGAGAGGACTAAACGTCTTTGCAGAAATATCC
TTCTCAAAGATTTTAGTTCTGATTACGTTTCTTTATGGCAAGACTTGGAC
GCTTCGTATAAAAGTCGTCGTCTTAAGTTGAAGTCAACTCTTAGGCGTGA
TTACTGTAAAAGTCCTTGGCAAACCGCTGCTACCATTGCTGCAATCGTTG
TTCTTATCCTCTCTTTTGTTCAAACAATTTGCTCAATTTGGCAGATAAAA
CAATCTTAGAATGTCTTACATCTTCGAAGACATTGTCAATCATTGATCTT
CTTCCTTGTTTATATGTTTTTTCTTATTGTATCCACATTCTCTAGTTTAT
CACTTGATAGAAACTTAATTCTCCTTTATATTTG back to topCoding sequence (CDS) from alignment at Vu09:38206489..38207972- >Vigun09g207400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g207400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g207400.1; organism=Vigna unguiculata; type=CDS; length=1236bp; location=Sequence derived from: Vu09:38206489..38207972- (Vigna unguiculata
ATGATGAACATGGACGATGTTGTGATCCATATTCAAGGAATGCTGGAGAA
AGCAAAGCCACCCATATCCGAAGAGTGTTGCATCTATAAAGTACCTTTAC
TTATTCGCCAAATCAACCAAGAAGCTTACACCCCAAAGATTGTTTCCATA
GGCCCTTATCACCATAACAACTCTCATCTTCAGAACATGGAAAACCACAA
ACTAACCTATTGCAAGTCATTTCTTGAACGAACTAACACAAGCATGGAAA
GTTGGATCCATTATATAGCAGGTAAAGAGCTCCATATCCGTCAATGTTAC
TTAGACGTACTTGAGTTTAGCTCGAAAGAACTTGTAGAGATGATATGTGT
GGATTCAGGATTTATACTGGAACTCTTTTGGATAACTCACTATAAGATAT
ATGACAAGTATCTTTCAACACCATGGTTTCGACTTATGATATTATATGAT
CTGGTGTTGCTTGAGAACCAACTTCCTTTTTTCGTTCTTCACCATCTCTT
CTGTCTATCTATTGCCGATGGTAACAGTGACATTCCTTCATTCATCCGGC
TCACATTTAAATACTTTGACTTATTCAATAGGTTAGATTTGAAACCTAAT
CTTATCACAACATGTCATCACTTCACAGATTTGTTACGACATTTTCACTT
ATGTGGAAGAAAACAAACTACAAGGACTGGCCAATGGCCGCATATTCCTA
GTGTTACTAAGTTGTCAGAAGCAGGAATAAGGTTTGGAAAGCACGAAAGT
AAGTGCTATCTAAACTTGAGTTTTTCAAGAAAGGTTCTTAAAATACCAAG
ATTCACGGTGGATGATGGTACTGAAATTTTGTTTCGCAACATGGTGGCTT
TGGAGCAGTTTCACTATCCTAACGATGCCTACATAACAGAGTATGCTCTT
GTTCTGCAATACCTAGTAAACACGGGTAAGGATGTGGATATACTCGTTAA
AGCGGGAATTTTGAAGAACTTTTTAGGGGACAGTGATTCTGCGGCCGAGA
GGACTAAACGTCTTTGCAGAAATATCCTTCTCAAAGATTTTAGTTCTGAT
TACGTTTCTTTATGGCAAGACTTGGACGCTTCGTATAAAAGTCGTCGTCT
TAAGTTGAAGTCAACTCTTAGGCGTGATTACTGTAAAAGTCCTTGGCAAA
CCGCTGCTACCATTGCTGCAATCGTTGTTCTTATCCTCTCTTTTGTTCAA
ACAATTTGCTCAATTTGGCAGATAAAACAATCTTAG back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004158 | DUF247_pln |
|
