Vigun09g217700.1

Transcript Overview
NameVigun09g217700.1
Unique NameVigun09g217700.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length474
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu09supercontigVu09:39131766..39132239 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuL371Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuL109Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
psvuL494Pisum sativum Cameor genome v1aPisum sativum
psvuL650Pisum sativum Cameor genome v1aPisum sativum
pvvuL069Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crvuL444Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL801Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL346Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caivuL0505Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivuL0509Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavuL434Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuL1327Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0126Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0321Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0370Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0761Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL538Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL729Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR672Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR699Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL332Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL308Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL460Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL434Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL397Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL462Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL419Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL600Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR458Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR463Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL315Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL403Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL478Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL617Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL331Cicer arietinum
carvuL418Cicer arietinum
ccavuL336Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL443Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR750Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR773Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR774Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR776Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR815Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL247Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL305Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL265Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL320Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL062Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL707Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR515Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR527Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
evm.model.Chr09.1545Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigan.02G069200.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Cc_v2.0_11065.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Psat06G0066600-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vfaba.Hedin2.R1.2g178760.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-TanjilR_30681Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_004501342.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Ca_09607.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vigst.02G054800.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Phvul.009G085200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Ca_08364.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vfaba.Tiffany.R1.2g144480.1Vicia faba cv. Tiffany genome v1.0Vicia faba
PvulFLAVERTChr09.622Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-TanjilR_09875Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Cr_02930.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-XM_004498767.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vfaba.Tiffany.R1.3g172400.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Va07G064050.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Cr_09625.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
XM_058929972.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vfaba.Hedin2.R1.3g208600.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
LR48_mrnaVigan07g247600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Phvul.001G043500.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigst.03G152400.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vigan.03G243200.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-XM_014645059.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-XM_014648639.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Cc_v2.0_07038.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Psat05G0115400-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
jg55274.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-KK1_034277Cajanus cajan Asha genome v1.0Cajanus cajan
rna-TanjilR_30271Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
PvulFLAVERTChr01.1000316Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
XM_058925084.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vum_03G01701.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vum_02G00575.1Vigna umbellata FF25 genome v1.0Vigna umbellata
evm.model.Chr08.280Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-TanjilR_12468Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Ca_09111Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Ca_01693Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Va04G065170.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
jg35622.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
LR48_mrnaVigan04g228500Vigna angularis Jingnong 6 genome v1.1Vigna angularis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun09g217700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun08g047000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun08g047000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun09g217700Vigun09g217700_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g217700.1Vigun09g217700.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun09g217700.1_Vu_IT97K-499-35_v1.1Vigun09g217700.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g217700.1.v1.1.CDS.1Vigun09g217700.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


Homology
[Close]
BLAST of Vigun09g217700.1 vs. DB:Swiss
Match: GDU3_ARATH (Protein GLUTAMINE DUMPER 3 OS=Arabidopsis thaliana OX=3702 GN=GDU3 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 3.314e-13
Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:   76 WHSPVPYXXXXXXXXXXXXXXXXXXXXCSYWKISGALQNEEN--GERNVEKLGDSE-NKESV--TVYEEKILVIMAGDEKPTFLATPKASSVS 339
            WHSPVPYLFGGLAAMLGLIAFALLILACSYW++SG L  EEN   ER++E +GD + +K +V      EK LVIMAG+ KPT+LATP   + +
Sbjct:   28 WHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSGYLDGEENQSRERDLE-VGDVKPDKTAVKPVALPEKFLVIMAGNVKPTYLATPSVKTCT 119
[Close]
BLAST of Vigun09g217700.1 vs. DB:Swiss
Match: GDU4_ARATH (Protein GLUTAMINE DUMPER 4 OS=Arabidopsis thaliana OX=3702 GN=GDU4 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 5.426e-13
Identity = 56/85 (65.88%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:   76 WHSPVPYXXXXXXXXXXXXXXXXXXXXCSYWKISGALQNEENGER-NVEKLGDSENKESVTVYEEKILVIMAGDEKPTFLATPKA 327
            WHSPVPYLFGGLAAMLGLIAFALLILACSYW++S     +++GER + EK   S  K +    EEK+LVIMAGD+ P FLATP A
Sbjct:   33 WHSPVPYLFGGLAAMLGLIAFALLILACSYWRLS--TSGDDSGERVDEEKESRSGVKAASAACEEKVLVIMAGDDLPRFLATPAA 115
[Close]
BLAST of Vigun09g217700.1 vs. DB:Swiss
Match: GDU2_ARATH (Protein GLUTAMINE DUMPER 2 OS=Arabidopsis thaliana OX=3702 GN=GDU2 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.096e-12
Identity = 53/91 (58.24%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:   76 WHSPVPYXXXXXXXXXXXXXXXXXXXXCSYWKISGALQNEENGERNVEKLGDSE-----NKESVTVYEEKILVIMAGDEKPTFLATPKASS 333
            WHSPVPYLFGGLAAML LI  ALLILACSYW++SG+       ER++E   D++     NK   T   EK LVIMAGD +PT+LATP   S
Sbjct:   28 WHSPVPYLFGGLAAMLALICVALLILACSYWRLSGS------AERDLEAGDDAKPDNDTNKTKHTEMPEKFLVIMAGDVRPTYLATPATRS 112
[Close]
BLAST of Vigun09g217700.1 vs. DB:Swiss
Match: GDU1_ARATH (Protein GLUTAMINE DUMPER 1 OS=Arabidopsis thaliana OX=3702 GN=GDU1 PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 8.182e-12
Identity = 54/83 (65.06%), Postives = 65/83 (78.31%), Query Frame = 1 
Query:   76 WHSPVPYXXXXXXXXXXXXXXXXXXXXCSYWKISGALQNEENGER-NVEKLGDSENKESVTVYEEKILVIMAGDEKPTFLATP 321
            WHSPVPYLFGGLAAMLGLIAFALLILACSYW++S +   EE+G+  + EK   S +K +   YEEK LVIMAG++ P +LATP
Sbjct:   30 WHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSSS--GEEDGQNVDEEKESRSGDKAANGAYEEKFLVIMAGEDLPRYLATP 110
[Close]
BLAST of Vigun09g217700.1 vs. DB:Swiss
Match: GDU5_ARATH (Protein GLUTAMINE DUMPER 5 OS=Arabidopsis thaliana OX=3702 GN=GDU5 PE=2 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 2.023e-11
Identity = 52/88 (59.09%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:   76 WHSPVPYXXXXXXXXXXXXXXXXXXXXCSYWKISGALQNEENGERNVEKLGDSENKESVTVYEEKILVIMAGDEKPTFLATPKASSVS 339
            W +PVPYLFGGLAAMLGLIAFALL+LACSYW++S   ++EE       K  +S  K     +EEKILVIMAG   PTFLATP A+ + 
Sbjct:   28 WRTPVPYLFGGLAAMLGLIAFALLLLACSYWRLSRQTEDEE-------KQTESGEKVVAKAFEEKILVIMAGQNNPTFLATPVAAKIC 108
The following BLAST results are available for this feature:
BLAST of Vigun09g217700.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 5
Match NameE-valueIdentityDescription
GDU3_ARATH3.314e-1363.44Protein GLUTAMINE DUMPER 3 OS=Arabidopsis thaliana... [more]
GDU4_ARATH5.426e-1365.88Protein GLUTAMINE DUMPER 4 OS=Arabidopsis thaliana... [more]
GDU2_ARATH2.096e-1258.24Protein GLUTAMINE DUMPER 2 OS=Arabidopsis thaliana... [more]
GDU1_ARATH8.182e-1265.06Protein GLUTAMINE DUMPER 1 OS=Arabidopsis thaliana... [more]
GDU5_ARATH2.023e-1159.09Protein GLUTAMINE DUMPER 5 OS=Arabidopsis thaliana... [more]
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..157

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun09g217700.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g217700.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g217700.1; organism=Vigna unguiculata; type=mRNA; length=474bp
ATGAGGAGCATACCCAGCACGACAACCTCAACTTCAACCGCACCGACAGG
CGCCGCGTCTCCTCCGCATCCCACGTGGCACTCTCCCGTTCCCTACTTGT
TCGGAGGACTCGCCGCCATGCTTGGTCTCATAGCCTTCGCTCTCTTGATC
TTGGCTTGCTCCTACTGGAAGATTTCTGGCGCGTTGCAGAACGAAGAAAA
CGGTGAAAGGAACGTGGAGAAACTGGGTGATTCTGAGAACAAGGAATCTG
TTACGGTGTACGAGGAGAAGATTCTGGTCATTATGGCTGGAGATGAGAAA
CCCACATTCTTGGCCACCCCCAAAGCCTCCTCTGTTTCTCGTCCACTCCC
CAACCATTTTGAGCAAAGCCTCCAACACCACGTCACTTCTCAGAAATCAC
AGAAAGAAGTGGAAACCCATCTTcaacaacctcaacaaacgctacaacaa
caacaacaGACCCAGACACCGTAA
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protein sequence of Vigun09g217700.1_Vu_IT97K-499-35_v1.1

>Vigun09g217700.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g217700.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g217700.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=158bp
MRSIPSTTTSTSTAPTGAASPPHPTWHSPVPYLFGGLAAMLGLIAFALLI
LACSYWKISGALQNEENGERNVEKLGDSENKESVTVYEEKILVIMAGDEK
PTFLATPKASSVSRPLPNHFEQSLQHHVTSQKSQKEVETHLQQPQQTLQQ
QQQTQTP*
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mRNA from alignment at Vu09:39131766..39132239-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun09g217700.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g217700.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g217700.1; organism=Vigna unguiculata; type=mRNA; length=474bp; location=Sequence derived from: Vu09:39131766..39132239- (Vigna unguiculata
ATGAGGAGCATACCCAGCACGACAACCTCAACTTCAACCGCACCGACAGG
CGCCGCGTCTCCTCCGCATCCCACGTGGCACTCTCCCGTTCCCTACTTGT
TCGGAGGACTCGCCGCCATGCTTGGTCTCATAGCCTTCGCTCTCTTGATC
TTGGCTTGCTCCTACTGGAAGATTTCTGGCGCGTTGCAGAACGAAGAAAA
CGGTGAAAGGAACGTGGAGAAACTGGGTGATTCTGAGAACAAGGAATCTG
TTACGGTGTACGAGGAGAAGATTCTGGTCATTATGGCTGGAGATGAGAAA
CCCACATTCTTGGCCACCCCCAAAGCCTCCTCTGTTTCTCGTCCACTCCC
CAACCATTTTGAGCAAAGCCTCCAACACCACGTCACTTCTCAGAAATCAC
AGAAAGAAGTGGAAACCCATCTTCAACAACCTCAACAAACGCTACAACAA
CAACAACAGACCCAGACACCGTAA
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Coding sequence (CDS) from alignment at Vu09:39131766..39132239-

>Vigun09g217700.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g217700.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g217700.1; organism=Vigna unguiculata; type=CDS; length=474bp; location=Sequence derived from: Vu09:39131766..39132239- (Vigna unguiculata
ATGAGGAGCATACCCAGCACGACAACCTCAACTTCAACCGCACCGACAGG
CGCCGCGTCTCCTCCGCATCCCACGTGGCACTCTCCCGTTCCCTACTTGT
TCGGAGGACTCGCCGCCATGCTTGGTCTCATAGCCTTCGCTCTCTTGATC
TTGGCTTGCTCCTACTGGAAGATTTCTGGCGCGTTGCAGAACGAAGAAAA
CGGTGAAAGGAACGTGGAGAAACTGGGTGATTCTGAGAACAAGGAATCTG
TTACGGTGTACGAGGAGAAGATTCTGGTCATTATGGCTGGAGATGAGAAA
CCCACATTCTTGGCCACCCCCAAAGCCTCCTCTGTTTCTCGTCCACTCCC
CAACCATTTTGAGCAAAGCCTCCAACACCACGTCACTTCTCAGAAATCAC
AGAAAGAAGTGGAAACCCATCTTCAACAACCTCAACAAACGCTACAACAA
CAACAACAGACCCAGACACCGTAA
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