Vigun09g228900.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Vigun09g228900.1 vs. DB:Swiss
Match: RBP1_ARATH (RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 1.203e-61 Identity = 129/295 (43.73%), Postives = 171/295 (57.97%), Query Frame = 1 Query: 13 MDSDRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQALQDTHVILGRTVEVKKAIPRSE--QQQHQNQLHHR------GGVNYSSSCDYSSDTNVRTKKIFVGVY----LLEEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKEGNHGYDGFSKLRSKSERGVPKSFP-----PYSPRNMLPGLV---PLPWYGSDGVYAYGSNAYGCWYPMGGYGGNGYAIPSDASRNFWYGPMM 837 MD DR KLFVGGI++ET+E+ LK +F++YG VL++ ++ + T PRGFGFV F++ +AL+DTH ILG+ V+V+KAI + E QQ Q R GG+ SS +S RTKKIFVG EEFK YFERFGR TDVVVM D VT+RPRGFGF+T+DSE+SV+ VM +FH+L+ ++VEVKRA+PKEG +G + +P S+ PY P G+V P P V+ Y N YP GY + + W P+M Sbjct: 1 MDYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTS----RTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPKEGIQSNNG-------NAVNIPPSYSSFQATPYVPEQNGYGMVLQFPPP------VFGYHHNVQAVQYPY------GYQFTAQVANVSWNNPIM 272
BLAST of Vigun09g228900.1 vs. DB:Swiss
Match: RNP1_ARATH (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 6.579e-58 Identity = 105/197 (53.30%), Postives = 133/197 (67.51%), Query Frame = 1 Query: 13 MDSDRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQALQDTHVILGRTVEVKKAIPRSEQQQHQNQLHHRGGVNYSSSCDYSSDTNVRTKKIFVG----VYLLEEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKEGN 591 MDSD+ KLFVGGIS ET ED L+ HF YG V + + D T PRGFGFV FSD S D+ LQ+ H I R V+VK+A+ R EQQ + R G N ++S D +TKKIFVG EEF+QYFE +G +TDV +M D T+RPRGFGF++FDSE++V SV+ K+FHDL+G+QVEVKRA+PK+ N Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEKHSIDTREVDVKRAMSREEQQ-----VSGRTG-NLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDAN 191
BLAST of Vigun09g228900.1 vs. DB:Swiss
Match: MSI2H_MOUSE (RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 7.491e-37 Identity = 74/193 (38.34%), Postives = 115/193 (59.59%), Query Frame = 1 Query: 22 DRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQAL-QDTHVILGRTVEVKKAIPRSEQQQHQNQLHHRGGVNYSSSCDYSSDTNVRTKKIFVGVY----LLEEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKE 585 D K+F+GG+S +T+ D L+ +F+K+G + + + D +T+ RGFGFVTF+D ++ D+ L Q H + +T++ K A PR Q + RTKKIFVG ++E+ KQYFE+FG++ D ++M D T+R RGFGF+TF++E+ V+ V FH++N + VE K+A PKE Sbjct: 19 DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMV----------------------TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 189 HSP 2 Score: 58.9214 bits (141), Expect = 2.356e-8 Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 1 Query: 10 KMDSDRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQALQ-DTHVILGRTVEVKKAIPR 261 KM + K+FVGG+S T + +K +F ++G V D+ + D +T RGFGFVTF + ++ + H I + VE KKA P+ Sbjct: 104 KMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPK 188
BLAST of Vigun09g228900.1 vs. DB:Swiss
Match: MSI2H_HUMAN (RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 1.170e-36 Identity = 74/193 (38.34%), Postives = 115/193 (59.59%), Query Frame = 1 Query: 22 DRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQAL-QDTHVILGRTVEVKKAIPRSEQQQHQNQLHHRGGVNYSSSCDYSSDTNVRTKKIFVGVY----LLEEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKE 585 D K+F+GG+S +T+ D L+ +F+K+G + + + D +T+ RGFGFVTF+D ++ D+ L Q H + +T++ K A PR Q + RTKKIFVG ++E+ KQYFE+FG++ D ++M D T+R RGFGF+TF++E+ V+ V FH++N + VE K+A PKE Sbjct: 19 DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPK----------------------MVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 189 HSP 2 Score: 58.5362 bits (140), Expect = 2.493e-8 Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 1 Query: 10 KMDSDRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQALQ-DTHVILGRTVEVKKAIPR 261 KM + K+FVGG+S T + +K +F ++G V D+ + D +T RGFGFVTF + ++ + H I + VE KKA P+ Sbjct: 104 KMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPK 188
BLAST of Vigun09g228900.1 vs. DB:Swiss
Match: DAZP1_HUMAN (DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 2.236e-36 Identity = 89/258 (34.50%), Postives = 128/258 (49.61%), Query Frame = 1 Query: 1 MNLKMDSDRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQALQD-THVILGRTVEVKKAIPRSEQQQHQNQLHHRGGVNYSSSCDYSSDTNVRTKKIFVGVYLLE----EFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKEGNHGYDGFSKLRSKSERGVPKSFPPYSPRNMLPGLVPLPW---YGSDGVYAYGSNAYG 750 MN + KLFVGG+ TT++ L+ +F++YG V+D I D +T RGFGFV F D + L H + GR ++ K PR Q + + + G D N ++ KIFVG E ++YF++FG +T+VV++ D+ RPRGFGFITF+ E+SV + FHD+ G++VEVKRA P++ G R VP + N G P W YG G++ A G Sbjct: 1 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPE---RTRPKEGWQKGPRSD-----NSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNA------ANGWAGQPPPTWQQGYGPQGMWVPAGQAIG 244
BLAST of Vigun09g228900.1 vs. DB:Swiss
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=Rbp6 PE=2 SV=3) HSP 1 Score: 137.887 bits (346), Expect = 4.823e-36 Identity = 79/197 (40.10%), Postives = 115/197 (58.38%), Query Frame = 1 Query: 10 KMDSDRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQAL-QDTHVILGRTVEVKKAIPRSEQQQHQNQLHHRGGVNYSSSCDYSSDTNVRTKKIFVG----VYLLEEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKE 585 ++ +D K+F+GG+S +T+ + L+ +F +YG + ++ + D +TR RGFGFVTFSD ++ D+ L Q TH + G+ V+ K A PR + H + RTKKIFVG LE+ K YFE+FG I D ++M D T+R RGFGF+TF SE+ V V FH++N + VE K+A PKE Sbjct: 23 EVPNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPR---RAHPKMV-------------------TRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKE 197 HSP 2 Score: 67.0106 bits (162), Expect = 5.827e-11 Identity = 28/67 (41.79%), Postives = 43/67 (64.18%), Query Frame = 1 Query: 388 EEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKEG 588 E + YF R+G I++ +VM+D T R RGFGF+TF SV V+ + H+L+G++V+ K A P+ Sbjct: 43 ESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRA 109
BLAST of Vigun09g228900.1 vs. DB:Swiss
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC660.15 PE=4 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 6.036e-36 Identity = 73/204 (35.78%), Postives = 114/204 (55.88%), Query Frame = 1 Query: 31 KLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQALQDTHVILGRTVEVKKAIPRSEQQQHQNQLHHRGGVNYSSSCDYSSDTNVRTKKIFVGVY----LLEEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKEG--------NHGYDG 606 K+F+GG++ ETT+D L+ +F ++G VLD T+ D +T RGFGF+TF + ++ + H + G+ ++ K+AIPR EQ+ +T K+FVG EEF+ +F +FGR+ D +M D T RPRGFGF+T+++E +V++ M + + ++G+ VEVKRA PK HGY G Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPREEQE--------------------------KTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPKASLRDSHDRHQHGYHG 341 HSP 2 Score: 73.9442 bits (180), Expect = 4.033e-13 Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = 1 Query: 28 AKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQALQDTHV-ILGRTVEVKKAIP----RSEQQQHQNQLH 294 AK+FVGG+ + TE+ + F ++G VLD+T+ +D T PRGFGFVT+ + SA + + ++ I G+ VEVK+A P R +HQ+ H Sbjct: 247 AKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPKASLRDSHDRHQHGYH 340
BLAST of Vigun09g228900.1 vs. DB:Swiss
Match: DAZP1_XENLA (DAZ-associated protein 1 OS=Xenopus laevis OX=8355 GN=dazap1 PE=1 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 7.207e-36 Identity = 87/242 (35.95%), Postives = 127/242 (52.48%), Query Frame = 1 Query: 1 MNLKMDSDRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQALQDT-HVILGRTVEVKKAIPRSEQQQHQNQLHHRGGVNYSSSCDYSSDTNVRTKKIFVGVYL----LEEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKEGNH---GYDGFSKLRSKSERGV--------PKSFPPYSPRNM 678 MN + + KLFVGG+ TT++ L+ +F++YG V+D I D +T RGFGFV F D + L H + GR ++ K PR Q + R G N R+ KIFVG E K+YF RFG +T+VV++ D+ RPRGFGFITF+ E+SV + FHD+ G++VEVKRA P++ G G ++ S++ + P+++ YSP+ M Sbjct: 1 MNNQGGDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERS---RPREGWQQKEP----RTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQTPGPPGSNQWGSRAMQSTANGWTGQPPQTWQGYSPQGM 235
BLAST of Vigun09g228900.1 vs. DB:Swiss
Match: DAZP1_MOUSE (DAZ-associated protein 1 OS=Mus musculus OX=10090 GN=Dazap1 PE=1 SV=2) HSP 1 Score: 137.887 bits (346), Expect = 8.598e-36 Identity = 89/258 (34.50%), Postives = 128/258 (49.61%), Query Frame = 1 Query: 1 MNLKMDSDRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQALQD-THVILGRTVEVKKAIPRSEQQQHQNQLHHRGGVNYSSSCDYSSDTNVRTKKIFVGVYLLE----EFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKEGNHGYDGFSKLRSKSERGVPKSFPPYSPRNMLPGLVPLPW---YGSDGVYAYGSNAYG 750 MN + KLFVGG+ TT++ L+ +F++YG V+D I D +T RGFGFV F D + L H + GR ++ K PR Q + + + G D S ++ KIFVG E ++YF++FG +T+VV++ D+ RPRGFGFITF+ E+SV + FHD+ G++VEVKRA P++ + G R P S N G P W YG G++ A G Sbjct: 1 MNSAGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPE---RTRPKEGWQKGPRSDSS-----KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAP------SAANGWAGQPPPTWQQGYGPQGMWVPAGQAIG 244
BLAST of Vigun09g228900.1 vs. DB:Swiss
Match: MSI1H_HUMAN (RNA-binding protein Musashi homolog 1 OS=Homo sapiens OX=9606 GN=MSI1 PE=1 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 4.246e-35 Identity = 75/193 (38.86%), Postives = 111/193 (57.51%), Query Frame = 1 Query: 22 DRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQAL-QDTHVILGRTVEVKKAIPRSEQQQHQNQLHHRGGVNYSSSCDYSSDTNVRTKKIFVGVY----LLEEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKE 585 D K+F+GG+S +TT++ L+ +F ++G V + + D T+ RGFGFVTF D + D+ L Q H + +T++ K A PR Q + RTKKIFVG +E+ KQYFE+FG++ D ++M D T+R RGFGF+TF+SE+ V+ V FH++N + VE K+A PKE Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT----------------------RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188 HSP 2 Score: 57.7658 bits (138), Expect = 5.434e-8 Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 1 Query: 10 KMDSDRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQALQ-DTHVILGRTVEVKKAIPR 261 KM + K+FVGG+S TT + +K +F ++G V D+ + D +T RGFGFVTF ++ + H I + VE KKA P+ Sbjct: 103 KMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK 187 The following BLAST results are available for this feature:
BLAST of Vigun09g228900.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g228900.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g228900.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g228900.1; organism=Vigna unguiculata; type=mRNA; length=1101bpback to top protein sequence of Vigun09g228900.1_Vu_IT97K-499-35_v1.1 >Vigun09g228900.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g228900.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g228900.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=367bpback to top mRNA from alignment at Vu09:40095209..40096464- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun09g228900.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g228900.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g228900.1; organism=Vigna unguiculata; type=mRNA; length=1256bp; location=Sequence derived from: Vu09:40095209..40096464- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu09:40095209..40096464- >Vigun09g228900.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g228900.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g228900.1; organism=Vigna unguiculata; type=CDS; length=1101bp; location=Sequence derived from: Vu09:40095209..40096464- (Vigna unguiculataback to top |