Vigun09g228900.1

Transcript Overview
NameVigun09g228900.1
Unique NameVigun09g228900.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length1101
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu09supercontigVu09:40095209..40096464 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuL159Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvuL291Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvuL376Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuL181Pisum sativum Cameor genome v1aPisum sativum
crvuL109Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvuL309Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
psvuL645Pisum sativum Cameor genome v1aPisum sativum
pvvuL067Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL284Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL391Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crvuL930Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL801Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL346Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caivuL0608Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavuL434Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuL649Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuL695Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuL0929Cajanus cajan Asha genome v1.0Cajanus cajan
ccvuL1039Cajanus cajan Asha genome v1.0Cajanus cajan
ccvuL1065Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0321Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0370Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0487Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0538Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0761Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0775Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1021Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL086Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL538Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL654Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL714Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR643Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR661Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR672Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR698Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL111Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL103Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL332Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL308Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL460Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvuL574Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL434Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvuL533Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL123Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL397Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL459Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL571Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL421Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL593Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL747Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL833Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR424Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR436Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR449Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR463Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL315Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL403Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL648Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL261Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL478Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL566Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL605Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL331Cicer arietinum
carvuL418Cicer arietinum
carvuL616Cicer arietinum
carvuL662Cicer arietinum
ccavuL178Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL336Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL439Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL498Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR712Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR735Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR750Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR760Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR767Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR773Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR815Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL087Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL137Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL247Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL293Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL101Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL150Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL265Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL308Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL065Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL253Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL707Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR484Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR503Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR520Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR527Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
rna-KK1_009593Cajanus cajan Asha genome v1.0Cajanus cajan
rna-TanjilR_09822Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vfaba.Hedin2.R1.2g172280.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
jg55108.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-TanjilR_12435Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vum_02G00465.1Vigna umbellata FF25 genome v1.0Vigna umbellata
evm.model.Chr09.1454Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vfaba.Tiffany.R1.2g138560.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Ca_14832.2Cicer arietinum ICC 4958 genome v2Cicer arietinum
Psat05G0132300-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigan.02G055500.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Cc_v2.0_07161.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Ca_01609Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
LR48_mrnaVigan04g239700Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Va04G066710.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Phvul.009G074200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_30640Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigst.02G045200.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-XM_022780944.1Vigna radiata cv. VC1973A genome v6.0Vigna radiata
PvulFLAVERTChr09.563Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Cc_v2.0_11508.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Cr_02849.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
XM_058927136.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun09g228900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun09g228900Vigun09g228900_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g228900.1Vigun09g228900.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun09g228900.1_Vu_IT97K-499-35_v1.1Vigun09g228900.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g228900.1.v1.1.CDS.3Vigun09g228900.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun09g228900.1.v1.1.CDS.2Vigun09g228900.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun09g228900.1.v1.1.CDS.1Vigun09g228900.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


Homology
BLAST of Vigun09g228900.1 vs. DB:Swiss
Match: RBP1_ARATH (RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 1.203e-61
Identity = 129/295 (43.73%), Postives = 171/295 (57.97%), Query Frame = 1
Query:   13 MDSDRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQALQDTHVILGRTVEVKKAIPRSE--QQQHQNQLHHR------GGVNYSSSCDYSSDTNVRTKKIFVGVY----LLEEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKEGNHGYDGFSKLRSKSERGVPKSFP-----PYSPRNMLPGLV---PLPWYGSDGVYAYGSNAYGCWYPMGGYGGNGYAIPSDASRNFWYGPMM 837
            MD DR KLFVGGI++ET+E+ LK +F++YG VL++ ++ +  T  PRGFGFV F++     +AL+DTH ILG+ V+V+KAI + E  QQ    Q   R      GG+   SS   +S    RTKKIFVG        EEFK YFERFGR TDVVVM D VT+RPRGFGF+T+DSE+SV+ VM  +FH+L+ ++VEVKRA+PKEG    +G       +   +P S+      PY P     G+V   P P      V+ Y  N     YP       GY   +  +   W  P+M
Sbjct:    1 MDYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTS----RTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPKEGIQSNNG-------NAVNIPPSYSSFQATPYVPEQNGYGMVLQFPPP------VFGYHHNVQAVQYPY------GYQFTAQVANVSWNNPIM 272          
BLAST of Vigun09g228900.1 vs. DB:Swiss
Match: RNP1_ARATH (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 6.579e-58
Identity = 105/197 (53.30%), Postives = 133/197 (67.51%), Query Frame = 1
Query:   13 MDSDRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQALQDTHVILGRTVEVKKAIPRSEQQQHQNQLHHRGGVNYSSSCDYSSDTNVRTKKIFVG----VYLLEEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKEGN 591
            MDSD+ KLFVGGIS ET ED L+ HF  YG V  + +  D  T  PRGFGFV FSD S  D+ LQ+ H I  R V+VK+A+ R EQQ     +  R G N ++S     D   +TKKIFVG        EEF+QYFE +G +TDV +M D  T+RPRGFGF++FDSE++V SV+ K+FHDL+G+QVEVKRA+PK+ N
Sbjct:    1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEKHSIDTREVDVKRAMSREEQQ-----VSGRTG-NLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDAN 191          
BLAST of Vigun09g228900.1 vs. DB:Swiss
Match: MSI2H_MOUSE (RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 7.491e-37
Identity = 74/193 (38.34%), Postives = 115/193 (59.59%), Query Frame = 1
Query:   22 DRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQAL-QDTHVILGRTVEVKKAIPRSEQQQHQNQLHHRGGVNYSSSCDYSSDTNVRTKKIFVGVY----LLEEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKE 585
            D  K+F+GG+S +T+ D L+ +F+K+G + +  +  D +T+  RGFGFVTF+D ++ D+ L Q  H +  +T++ K A PR  Q +                         RTKKIFVG      ++E+ KQYFE+FG++ D ++M D  T+R RGFGF+TF++E+ V+ V    FH++N + VE K+A PKE
Sbjct:   19 DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMV----------------------TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 189          

HSP 2 Score: 58.9214 bits (141), Expect = 2.356e-8
Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 1
Query:   10 KMDSDRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQALQ-DTHVILGRTVEVKKAIPR 261
            KM +   K+FVGG+S  T  + +K +F ++G V D+ +  D +T   RGFGFVTF +    ++  +   H I  + VE KKA P+
Sbjct:  104 KMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPK 188          
BLAST of Vigun09g228900.1 vs. DB:Swiss
Match: MSI2H_HUMAN (RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.170e-36
Identity = 74/193 (38.34%), Postives = 115/193 (59.59%), Query Frame = 1
Query:   22 DRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQAL-QDTHVILGRTVEVKKAIPRSEQQQHQNQLHHRGGVNYSSSCDYSSDTNVRTKKIFVGVY----LLEEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKE 585
            D  K+F+GG+S +T+ D L+ +F+K+G + +  +  D +T+  RGFGFVTF+D ++ D+ L Q  H +  +T++ K A PR  Q +                         RTKKIFVG      ++E+ KQYFE+FG++ D ++M D  T+R RGFGF+TF++E+ V+ V    FH++N + VE K+A PKE
Sbjct:   19 DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPK----------------------MVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 189          

HSP 2 Score: 58.5362 bits (140), Expect = 2.493e-8
Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 1
Query:   10 KMDSDRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQALQ-DTHVILGRTVEVKKAIPR 261
            KM +   K+FVGG+S  T  + +K +F ++G V D+ +  D +T   RGFGFVTF +    ++  +   H I  + VE KKA P+
Sbjct:  104 KMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPK 188          
BLAST of Vigun09g228900.1 vs. DB:Swiss
Match: DAZP1_HUMAN (DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.236e-36
Identity = 89/258 (34.50%), Postives = 128/258 (49.61%), Query Frame = 1
Query:    1 MNLKMDSDRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQALQD-THVILGRTVEVKKAIPRSEQQQHQNQLHHRGGVNYSSSCDYSSDTNVRTKKIFVGVYLLE----EFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKEGNHGYDGFSKLRSKSERGVPKSFPPYSPRNMLPGLVPLPW---YGSDGVYAYGSNAYG 750
            MN     +  KLFVGG+   TT++ L+ +F++YG V+D  I  D +T   RGFGFV F D +     L    H + GR ++ K   PR  Q +   +   + G       D     N ++ KIFVG         E ++YF++FG +T+VV++ D+   RPRGFGFITF+ E+SV   +   FHD+ G++VEVKRA P++      G         R VP +       N   G  P  W   YG  G++     A G
Sbjct:    1 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPE---RTRPKEGWQKGPRSD-----NSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNA------ANGWAGQPPPTWQQGYGPQGMWVPAGQAIG 244          
BLAST of Vigun09g228900.1 vs. DB:Swiss
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=Rbp6 PE=2 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 4.823e-36
Identity = 79/197 (40.10%), Postives = 115/197 (58.38%), Query Frame = 1
Query:   10 KMDSDRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQAL-QDTHVILGRTVEVKKAIPRSEQQQHQNQLHHRGGVNYSSSCDYSSDTNVRTKKIFVG----VYLLEEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKE 585
            ++ +D  K+F+GG+S +T+ + L+ +F +YG + ++ +  D +TR  RGFGFVTFSD ++ D+ L Q TH + G+ V+ K A PR   + H   +                    RTKKIFVG       LE+ K YFE+FG I D ++M D  T+R RGFGF+TF SE+ V  V    FH++N + VE K+A PKE
Sbjct:   23 EVPNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPR---RAHPKMV-------------------TRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKE 197          

HSP 2 Score: 67.0106 bits (162), Expect = 5.827e-11
Identity = 28/67 (41.79%), Postives = 43/67 (64.18%), Query Frame = 1
Query:  388 EEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKEG 588
            E  + YF R+G I++ +VM+D  T R RGFGF+TF    SV  V+ +  H+L+G++V+ K A P+  
Sbjct:   43 ESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRA 109          
BLAST of Vigun09g228900.1 vs. DB:Swiss
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC660.15 PE=4 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 6.036e-36
Identity = 73/204 (35.78%), Postives = 114/204 (55.88%), Query Frame = 1
Query:   31 KLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQALQDTHVILGRTVEVKKAIPRSEQQQHQNQLHHRGGVNYSSSCDYSSDTNVRTKKIFVGVY----LLEEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKEG--------NHGYDG 606
            K+F+GG++ ETT+D L+ +F ++G VLD T+  D +T   RGFGF+TF +    ++ +   H + G+ ++ K+AIPR EQ+                          +T K+FVG        EEF+ +F +FGR+ D  +M D  T RPRGFGF+T+++E +V++ M + +  ++G+ VEVKRA PK           HGY G
Sbjct:  164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPREEQE--------------------------KTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPKASLRDSHDRHQHGYHG 341          

HSP 2 Score: 73.9442 bits (180), Expect = 4.033e-13
Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = 1
Query:   28 AKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQALQDTHV-ILGRTVEVKKAIP----RSEQQQHQNQLH 294
            AK+FVGG+  + TE+  +  F ++G VLD+T+ +D  T  PRGFGFVT+ + SA +  +   ++ I G+ VEVK+A P    R    +HQ+  H
Sbjct:  247 AKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPKASLRDSHDRHQHGYH 340          
BLAST of Vigun09g228900.1 vs. DB:Swiss
Match: DAZP1_XENLA (DAZ-associated protein 1 OS=Xenopus laevis OX=8355 GN=dazap1 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.207e-36
Identity = 87/242 (35.95%), Postives = 127/242 (52.48%), Query Frame = 1
Query:    1 MNLKMDSDRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQALQDT-HVILGRTVEVKKAIPRSEQQQHQNQLHHRGGVNYSSSCDYSSDTNVRTKKIFVGVYL----LEEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKEGNH---GYDGFSKLRSKSERGV--------PKSFPPYSPRNM 678
            MN +   +  KLFVGG+   TT++ L+ +F++YG V+D  I  D +T   RGFGFV F D +     L    H + GR ++ K   PR  Q +       R G             N R+ KIFVG         E K+YF RFG +T+VV++ D+   RPRGFGFITF+ E+SV   +   FHD+ G++VEVKRA P++      G  G ++  S++ +          P+++  YSP+ M
Sbjct:    1 MNNQGGDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERS---RPREGWQQKEP----RTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQTPGPPGSNQWGSRAMQSTANGWTGQPPQTWQGYSPQGM 235          
BLAST of Vigun09g228900.1 vs. DB:Swiss
Match: DAZP1_MOUSE (DAZ-associated protein 1 OS=Mus musculus OX=10090 GN=Dazap1 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 8.598e-36
Identity = 89/258 (34.50%), Postives = 128/258 (49.61%), Query Frame = 1
Query:    1 MNLKMDSDRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQALQD-THVILGRTVEVKKAIPRSEQQQHQNQLHHRGGVNYSSSCDYSSDTNVRTKKIFVGVYLLE----EFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKEGNHGYDGFSKLRSKSERGVPKSFPPYSPRNMLPGLVPLPW---YGSDGVYAYGSNAYG 750
            MN     +  KLFVGG+   TT++ L+ +F++YG V+D  I  D +T   RGFGFV F D +     L    H + GR ++ K   PR  Q +   +   + G       D S     ++ KIFVG         E ++YF++FG +T+VV++ D+   RPRGFGFITF+ E+SV   +   FHD+ G++VEVKRA P++  +   G         R  P      S  N   G  P  W   YG  G++     A G
Sbjct:    1 MNSAGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPE---RTRPKEGWQKGPRSDSS-----KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAP------SAANGWAGQPPPTWQQGYGPQGMWVPAGQAIG 244          
BLAST of Vigun09g228900.1 vs. DB:Swiss
Match: MSI1H_HUMAN (RNA-binding protein Musashi homolog 1 OS=Homo sapiens OX=9606 GN=MSI1 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.246e-35
Identity = 75/193 (38.86%), Postives = 111/193 (57.51%), Query Frame = 1
Query:   22 DRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQAL-QDTHVILGRTVEVKKAIPRSEQQQHQNQLHHRGGVNYSSSCDYSSDTNVRTKKIFVGVY----LLEEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKE 585
            D  K+F+GG+S +TT++ L+ +F ++G V +  +  D  T+  RGFGFVTF D +  D+ L Q  H +  +T++ K A PR  Q +                         RTKKIFVG       +E+ KQYFE+FG++ D ++M D  T+R RGFGF+TF+SE+ V+ V    FH++N + VE K+A PKE
Sbjct:   18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT----------------------RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188          

HSP 2 Score: 57.7658 bits (138), Expect = 5.434e-8
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 1
Query:   10 KMDSDRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQALQ-DTHVILGRTVEVKKAIPR 261
            KM +   K+FVGG+S  TT + +K +F ++G V D+ +  D +T   RGFGFVTF      ++  +   H I  + VE KKA P+
Sbjct:  103 KMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK 187          
The following BLAST results are available for this feature:
BLAST of Vigun09g228900.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
RBP1_ARATH1.203e-6143.73RNA-binding protein 1 OS=Arabidopsis thaliana OX=3... [more]
RNP1_ARATH6.579e-5853.30Heterogeneous nuclear ribonucleoprotein 1 OS=Arabi... [more]
MSI2H_MOUSE7.491e-3738.34RNA-binding protein Musashi homolog 2 OS=Mus muscu... [more]
MSI2H_HUMAN1.170e-3638.34RNA-binding protein Musashi homolog 2 OS=Homo sapi... [more]
DAZP1_HUMAN2.236e-3634.50DAZ-associated protein 1 OS=Homo sapiens OX=9606 G... [more]
MSIR6_DROME4.823e-3640.10RNA-binding protein Musashi homolog Rbp6 OS=Drosop... [more]
YHKF_SCHPO6.036e-3635.78Uncharacterized RNA-binding protein C660.15 OS=Sch... [more]
DAZP1_XENLA7.207e-3635.95DAZ-associated protein 1 OS=Xenopus laevis OX=8355... [more]
DAZP1_MOUSE8.598e-3634.50DAZ-associated protein 1 OS=Mus musculus OX=10090 ... [more]
MSI1H_HUMAN4.246e-3538.86RNA-binding protein Musashi homolog 1 OS=Homo sapi... [more]
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 11..82
e-value: 1.7E-17
score: 74.1
coord: 121..189
e-value: 1.2E-12
score: 58.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 130..185
e-value: 9.8E-11
score: 41.3
coord: 12..79
e-value: 7.0E-14
score: 51.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 130..193
score: 13.584
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 10..86
score: 16.33
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 112..197
e-value: 2.7E-18
score: 68.0
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..96
e-value: 2.8E-23
score: 84.0
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 6..108
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 130..201

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun09g228900.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g228900.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g228900.1; organism=Vigna unguiculata; type=mRNA; length=1101bp
ATGAATTTGAAGATGGATTCCGATAGAGCGAAGCTGTTCGTAGGGGGCAT
TTCTCGTGAAACCACCGAAGATGTTCTCAAATTCCACTTCGCCAAGTACG
GTACCGTTTTGGACTCCACAATCTCCGTAGACCACAGCACCCGGTGCCCT
AGAGGTTTCGGCTTCGTCACCTTCTCTGACCTCTCCGCCGCCGATCAAGC
CCTGCAAGACACGCATGTCATTCTCGGAAGAACGGTAGAAGTAAAGAAAG
CAATTCCAAGGAGTGAACAACAGCAACACCAAAACCAGTTACACCATAGA
GGGGGAGTTAACTATAGTAGTAGTTGTGATTATAGCAGTGACACCAACGT
TAGGACTAAAAAGATTTTTGTGGGGGTTTACCTGCTGGAGGAGTTTAAGC
AATACTTCGAGAGGTTTGGTCGAATAACTGACGTTGTGGTGATGCAGGAC
AGTGTTACTCACCGGCCCAGGGGGTTTGGGTTCATTACGTTTGATTCCGA
GGAATCGGTTCAAAGCGTTATGGTGAAAAGTTTTCATGACTTGAATGGTA
GACAAGTAGAAGTCAAGAGGGCTGTTCCCAAGGAGGGCAACCATGGGTAT
GATGGTTTTAGTAAATTGAGAAGTAAGAGTGAAAGAGGAGTTCCTAAAAG
TTTTCCTCCTTACAGTCCTAGGAACATGCTTCCGGGTCTTGTTCCTTTGC
CGTGGTATGGTAGTGATGGAGTATATGCCTATGGATCTAATGCTTACGGT
TGTTGGTACCCTATGGGTGGGTATGGGGGGAACGGATATGCGATTCCGTC
TGATGCTTCTAGGAACTTCTGGTACGGGCCGATGATGGCTGGTCCTCAGG
CATGTCAGGTGCCTTATGCTAGTGCTGTTCCAAACATTGCGTATGTCGGG
GGTAGGATTGGAATAGTAGGTAGTGGTGTAGGATCTTGGGGGTATGGTGG
CATTCTTGGGTCTGCAACAAATTTGAAATTTGATCAACCTTTTATTGGCA
ACGGATTTGTTCCAGGCAACACCACATTGCATCATGGTGTAAAGCAGAAT
GTTGTGGACTCTTCGAGTTTCAAAGGAAGCAATGGTGAAATATCTAGCTG
A
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protein sequence of Vigun09g228900.1_Vu_IT97K-499-35_v1.1

>Vigun09g228900.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g228900.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g228900.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=367bp
MNLKMDSDRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCP
RGFGFVTFSDLSAADQALQDTHVILGRTVEVKKAIPRSEQQQHQNQLHHR
GGVNYSSSCDYSSDTNVRTKKIFVGVYLLEEFKQYFERFGRITDVVVMQD
SVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKEGNHGY
DGFSKLRSKSERGVPKSFPPYSPRNMLPGLVPLPWYGSDGVYAYGSNAYG
CWYPMGGYGGNGYAIPSDASRNFWYGPMMAGPQACQVPYASAVPNIAYVG
GRIGIVGSGVGSWGYGGILGSATNLKFDQPFIGNGFVPGNTTLHHGVKQN
VVDSSSFKGSNGEISS*
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mRNA from alignment at Vu09:40095209..40096464-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun09g228900.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g228900.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g228900.1; organism=Vigna unguiculata; type=mRNA; length=1256bp; location=Sequence derived from: Vu09:40095209..40096464- (Vigna unguiculata
ATGAATTTGAAGATGGATTCCGATAGAGCGAAGCTGTTCGTAGGGGGCAT TTCTCGTGAAACCACCGAAGATGTTCTCAAATTCCACTTCGCCAAGTACG GTACCGTTTTGGACTCCACAATCTCCGTAGACCACAGCACCCGGTGCCCT AGAGGTTTCGGCTTCGTCACCTTCTCTGACCTCTCCGCCGCCGATCAAGC CCTGCAAGACACGCATGTCATTCTCGGAAGAACGGTTAGTCCTTTCCCCT CTTTCCAGAAACGCTCGTTTATTCAAGCTTTAAGAAACTGAAACCGTCGT GAGTTGAATTTCGTTTGTGTTTCTATGTCGTTAATGTGTTGTTTGGTTTG ACCAGTTCTGTTTTCTTGTCGTCTATAGGTAGAAGTAAAGAAAGCAATTC CAAGGAGTGAACAACAGCAACACCAAAACCAGTTACACCATAGAGGGGGA GTTAACTATAGTAGTAGTTGTGATTATAGCAGTGACACCAACGTTAGGAC TAAAAAGATTTTTGTGGGGGTTTACCTGCTGGTATATCTGAGGAGGAGTT TAAGCAATACTTCGAGAGGTTTGGTCGAATAACTGACGTTGTGGTGATGC AGGACAGTGTTACTCACCGGCCCAGGGGGTTTGGGTTCATTACGTTTGAT TCCGAGGAATCGGTTCAAAGCGTTATGGTGAAAAGTTTTCATGACTTGAA TGGTAGACAAGTAGAAGTCAAGAGGGCTGTTCCCAAGGAGGGCAACCATG GGTATGATGGTTTTAGTAAATTGAGAAGTAAGAGTGAAAGAGGAGTTCCT AAAAGTTTTCCTCCTTACAGTCCTAGGAACATGCTTCCGGGTCTTGTTCC TTTGCCGTGGTATGGTAGTGATGGAGTATATGCCTATGGATCTAATGCTT ACGGTTGTTGGTACCCTATGGGTGGGTATGGGGGGAACGGATATGCGATT CCGTCTGATGCTTCTAGGAACTTCTGGTACGGGCCGATGATGGCTGGTCC TCAGGCATGTCAGGTGCCTTATGCTAGTGCTGTTCCAAACATTGCGTATG TCGGGGGTAGGATTGGAATAGTAGGTAGTGGTGTAGGATCTTGGGGGTAT GGTGGCATTCTTGGGTCTGCAACAAATTTGAAATTTGATCAACCTTTTAT TGGCAACGGATTTGTTCCAGGCAACACCACATTGCATCATGGTGTAAAGC AGAATGTTGTGGACTCTTCGAGTTTCAAAGGAAGCAATGGTGAAATATCT AGCTGA
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Coding sequence (CDS) from alignment at Vu09:40095209..40096464-

>Vigun09g228900.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g228900.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g228900.1; organism=Vigna unguiculata; type=CDS; length=1101bp; location=Sequence derived from: Vu09:40095209..40096464- (Vigna unguiculata
ATGAATTTGAAGATGGATTCCGATAGAGCGAAGCTGTTCGTAGGGGGCAT
TTCTCGTGAAACCACCGAAGATGTTCTCAAATTCCACTTCGCCAAGTACG
GTACCGTTTTGGACTCCACAATCTCCGTAGACCACAGCACCCGGTGCCCT
AGAGGTTTCGGCTTCGTCACCTTCTCTGACCTCTCCGCCGCCGATCAAGC
CCTGCAAGACACGCATGTCATTCTCGGAAGAACGGTAGAAGTAAAGAAAG
CAATTCCAAGGAGTGAACAACAGCAACACCAAAACCAGTTACACCATAGA
GGGGGAGTTAACTATAGTAGTAGTTGTGATTATAGCAGTGACACCAACGT
TAGGACTAAAAAGATTTTTGTGGGGGTTTACCTGCTGGAGGAGTTTAAGC
AATACTTCGAGAGGTTTGGTCGAATAACTGACGTTGTGGTGATGCAGGAC
AGTGTTACTCACCGGCCCAGGGGGTTTGGGTTCATTACGTTTGATTCCGA
GGAATCGGTTCAAAGCGTTATGGTGAAAAGTTTTCATGACTTGAATGGTA
GACAAGTAGAAGTCAAGAGGGCTGTTCCCAAGGAGGGCAACCATGGGTAT
GATGGTTTTAGTAAATTGAGAAGTAAGAGTGAAAGAGGAGTTCCTAAAAG
TTTTCCTCCTTACAGTCCTAGGAACATGCTTCCGGGTCTTGTTCCTTTGC
CGTGGTATGGTAGTGATGGAGTATATGCCTATGGATCTAATGCTTACGGT
TGTTGGTACCCTATGGGTGGGTATGGGGGGAACGGATATGCGATTCCGTC
TGATGCTTCTAGGAACTTCTGGTACGGGCCGATGATGGCTGGTCCTCAGG
CATGTCAGGTGCCTTATGCTAGTGCTGTTCCAAACATTGCGTATGTCGGG
GGTAGGATTGGAATAGTAGGTAGTGGTGTAGGATCTTGGGGGTATGGTGG
CATTCTTGGGTCTGCAACAAATTTGAAATTTGATCAACCTTTTATTGGCA
ACGGATTTGTTCCAGGCAACACCACATTGCATCATGGTGTAAAGCAGAAT
GTTGTGGACTCTTCGAGTTTCAAAGGAAGCAATGGTGAAATATCTAGCTG
A
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding