Vigun09g232000.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun09g232000.1 vs. DB:Swiss
Match: PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=PUB4 PE=1 SV=3) HSP 1 Score: 191.815 bits (486), Expect = 1.040e-53 Identity = 147/308 (47.73%), Postives = 202/308 (65.58%), Query Frame = 1 Query: 76 STPSSESRRLLIACAADNSDEFIRHLVLNLSSCSIEDQKQATMEIRLLSKNKEENRVKIAKAGAIEPXXXXXXXXXXXXXQEYVVTAILNLSLCDENKELINSSGAVKPLVRALETGTPTAKENAACALLRLSQREEDRVAIGRAGAIPPXXXXXXXXXXXXXXDAATALYAVCSTKENKVRAVRAGVMRALVELMADLGSSMXXXXXXXXXXXXXXXXXXXXXXXXXXIPVLVEIVEVGTQRQKEIAVGVLLQICEESWVYRTMVAREGAIPPLVAFSQSHSNRPRHKAEKLIELLRQPRSGNGAGR 999 S PS+E+RR L ++ LV L S S++ Q+QAT E+RLL+K+ +NR+ I +GAI L+ L S+D QE VTA+LNLS+ D NK+ I +GA++PL+ LE G+ AKEN+A L LS EE+++ IG++GAI PLV LL G RGKKDAATAL+ + +ENK V++G +R L++LM D + MVDKAV V++ + + EGR A+ +EGGIP+LVE+VE+G+ R KE A LLQ+ S + MV +EGA+PPLVA SQS + R R KA+ L+ R R GN AGR Sbjct: 526 SAPSNETRRDLSEVETQ-----VKKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAI-VLLVELLYSTDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLM-DPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLVALSQSGTPRAREKAQALLSYFRNQRHGN-AGR 825
BLAST of Vigun09g232000.1 vs. DB:Swiss
Match: PUB2_ARATH (U-box domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PUB2 PE=2 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 4.809e-46 Identity = 133/283 (47.00%), Postives = 182/283 (64.31%), Query Frame = 1 Query: 142 IRHLVLNLSSCSIEDQKQATMEIRLLSKNKEENRVKIAKAGAIEPXXXXXXXXXXXXXQEYVVTAILNLSLCDENKELINSSGAVKPLVRALETGT-PTAKENAACALLRLSQREEDRVAIGRAGAIPPXXXXXXXXXXXXXXDAATALYAVCSTKENKVRAVRAGVMRALVELMADLGSSMXXXXXXXXXXXXXXXXXXXXXXXXXXIPVLVEIVEVGTQRQKEIAVGVLLQICEESWVYRTMVAREGAIPPLVAFSQSHSNRPRHKAEKLIELLRQPRSGN 987 ++ L+ +L S S++ Q++AT IR+L++N +NR+ IA+ AI P + L S+D ++Q VT +LNLS+ D NK LI SGA+ PL+ L+TG AK N+A L LS EE + IG AGAI PLV LL G L GKKDAATAL+ + ENK + + AG +R LVELM D MV+KAV V++ + V EG+ A+ EEGGIPVLVE+VE+G+ R KE A LLQ+C S + V REG IPPLVA ++S + R + KA+ L++ + R N Sbjct: 423 VKKLIDDLKSSSLDTQREATARIRILARNSTDNRIVIARCEAI-PSLVSLLYSTDERIQADAVTCLLNLSINDNNKSLIAESGAIVPLIHVLKTGYLEEAKANSAATLFSLSVIEEYKTEIGEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELM-DPAFGMVEKAVVVLANLATVREGKIAIGEEGGIPVLVEVVELGSARGKENATAALLQLCTHSPKFCNNVIREGVIPPLVALTKSGTARGKEKAQNLLKYFKAHRQSN 703
BLAST of Vigun09g232000.1 vs. DB:Swiss
Match: PUB11_ARATH (U-box domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=PUB11 PE=2 SV=2) HSP 1 Score: 161.77 bits (408), Expect = 1.267e-43 Identity = 123/278 (44.24%), Postives = 180/278 (64.75%), Query Frame = 1 Query: 142 IRHLVLNLSSCSIEDQKQATMEIRLLSKNKEENRVKIAKAGAIEPXXXXXXXXXXXXXQEYVVTAILNLSLCDENKELINSSGAVKPLVRALETGTPTAKENAACALLRLSQREEDRVAIGRAGAIPPXXXXXXXXXXXXXXDAATALYAVCSTKENKVRAVRAGVMRALVELMAD-LGSSMXXXXXXXXXXXXXXXXXXXXXXXXXXIPVLVEIVEVGTQRQKEIAVGVLLQICEESWVYRTMVAREGAIPPLVAFSQSHSNRPRHKAEKLIELLRQ 972 IR LV LSS S ED++ A EIR LSK +NR+ IA+AGAI P++ L +S D+ QE +T +LNLS+ + NKELI +GAV +V+ L GT A+ENAA L LS +E+++ IG +GAIP LV LLE G RGKKDAATAL+ +C NK RAVRAG++ ALV++++D MVD+A+ ++SV+ + ++A+V+ +P L+ I++ R +E A +LL +C+ + R GA+ PL+ S++ + R + KA L+ELLR+ Sbjct: 333 IRALVQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAI-PVLVNLLTSEDVATQENAITCVLNLSIYENNKELIMFAGAVTSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGGSGAIPALVDLLENGTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDAKSAIVKANTLPALIGILQTDQTRNRENAAAILLSLCKRDTEKLITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLRK 609
BLAST of Vigun09g232000.1 vs. DB:Swiss
Match: PUB13_ARATH (U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 2.538e-42 Identity = 116/273 (42.49%), Postives = 175/273 (64.10%), Query Frame = 1 Query: 142 IRHLVLNLSSCSIEDQKQATMEIRLLSKNKEENRVKIAKAGAIEPXXXXXXXXXXXXXQEYVVTAILNLSLCDENKELINSSGAVKPLVRALETGTPTAKENAACALLRLSQREEDRVAIGRAGAIPPXXXXXXXXXXXXXXDAATALYAVCSTKENKVRAVRAGVMRALVELMADLGSSMXXXXXXXXXXXXXXXXXXXXXXXXXXIPVLVEIVEVGTQRQKEIAVGVLLQICEESWVYRTMVAREGAIPPLVAFSQSHSNRPRHKAEKLIE 960 I L+ L+ + EDQ+ A EIRLL+K +NRV IA+AGAI PL+ L S+ D ++QE+ VTA+LNLS+C+ NK I S+GA+ +V+ L+ G+ A+ENAA L LS +E++V IG GAIPPLV LL G RGKKDAATAL+ +C + NK +A+RAGV+ L L+ + GS MVD+A+ +++++ EG+A + +P LVE + G+ R +E A VL+ +C + + G + PL+ + + ++R + KA +L+E Sbjct: 354 IEDLMWRLAYGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAI-PLLVGLLSTPDSRIQEHSVTALLNLSICENNKGAIVSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHPEGKAIIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLCSGDPQHLVEAQKLGLMGPLIDLAGNGTDRGKRKAAQLLE 625
BLAST of Vigun09g232000.1 vs. DB:Swiss
Match: PUB10_ARATH (U-box domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=PUB10 PE=2 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 4.325e-42 Identity = 123/278 (44.24%), Postives = 176/278 (63.31%), Query Frame = 1 Query: 142 IRHLVLNLSSCSIEDQKQATMEIRLLSKNKEENRVKIAKAGAIEPXXXXXXXXXXXXXQEYVVTAILNLSLCDENKELINSSGAVKPLVRALETGTPTAKENAACALLRLSQREEDRVAIGRAGAIPPXXXXXXXXXXXXXXDAATALYAVCSTKENKVRAVRAGVMRALVELMADLGSS-MXXXXXXXXXXXXXXXXXXXXXXXXXXIPVLVEIVEVGTQRQKEIAVGVLLQICEESWVYRTMVAREGAIPPLVAFSQSHSNRPRHKAEKLIELLRQ 972 IR LV LSS SIED++ A EIR LSK +NR+ IA+AGAI LV LL+S D + QE VT ILNLS+ + NKELI +GAV +V L G+ A+ENAA L LS +E+++ IG +GAI LV LL+ G +RGKKDAATAL+ +C + NK RAVRAG+++ LV+++ D S M D+A+ ++SV+ + A++ IP L++ ++ R +E A +LL +C+ + R GA+ PL+ S+ + R + KA L+ELLR+ Sbjct: 343 IRALVCKLSSQSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQENAVTCILNLSIYEHNKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKIIIGASGAIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERMADEALTILSVLASNQVAKTAILRANAIPPLIDCLQKDQPRNRENAAAILLCLCKRDTEKLISIGRLGAVVPLMELSRDGTERAKRKANSLLELLRK 620
BLAST of Vigun09g232000.1 vs. DB:Swiss
Match: PUB12_ARATH (U-box domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=PUB12 PE=2 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 8.074e-42 Identity = 117/281 (41.64%), Postives = 183/281 (65.12%), Query Frame = 1 Query: 124 DNSDEFIRHLVLNLSSCSIEDQKQATMEIRLLSKNKEENRVKIAKAGAIEPXXXXXXXXXXXXXQEYVVTAILNLSLCDENK-ELINSSGAVKPLVRALETGTPTAKENAACALLRLSQREEDRVAIGRAGAIPPXXXXXXXXXXXXXXDAATALYAVCSTKENKVRAVRAGVMRALVELMADLGSSMXXXXXXXXXXXXXXXXXXXXXXXXXXIPVLVEIVEVGTQRQKEIAVGVLLQICEESWVYRTMVARE--GAIPPLVAFSQSHSNRPRHKAEKLI 957 D+ I L+L L+S ED++ A EIRLL+K NRV IA +GAI LV+LL+ S+D + QE+ VT+ILNLS+C ENK +++ SSGAV +V L+ G+ A+ENAA L LS +E++V IG AGAIPPLV LL G RGKKDAATAL+ +C + NK +AVRAG++ L+ L+ + S MVD+++ +++++ +G++ + +PVLV+ + G+ R KE + VL+ +C SW + ++ + G + L+ +++ ++R + KA +L+ Sbjct: 351 DDEHNKIEELLLKLTSQQPEDRRSAAGEIRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSRTQEHAVTSILNLSICQENKGKIVYSSGAVPGIVHVLQKGSMEARENAAATLFSLSVIDENKVTIGAAGAIPPLVTLLSEGSQRGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLTEPESGMVDESLSILAILSSHPDGKSEVGAADAVPVLVDFIRSGSPRNKENSAAVLVHLC--SWNQQHLIEAQKLGIMDLLIEMAENGTDRGKRKAAQLL 629
BLAST of Vigun09g232000.1 vs. DB:Swiss
Match: PUB3_ARATH (U-box domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PUB3 PE=2 SV=2) HSP 1 Score: 157.918 bits (398), Expect = 1.017e-41 Identity = 140/286 (48.95%), Postives = 185/286 (64.69%), Query Frame = 1 Query: 151 LVLNLSSCSIEDQKQATMEIRLLSKNKEENRVKIAKAGAIEPXXXXXXXXXXXXXQEYVVTAILNLSLCDENKELINSSGAVKPLVRALETGTPTAKENAACALLRLSQREEDRVAIGRA-GAIPPXXXXXXXXXXXXXXDAATALYAVCSTKENKVRAVRAGVMRALVELMADLGSSMXXXXXXXXXXXXXXXXXXXXXXXXXXIPVLVEIVEVGTQRQKEIAVGVLLQICEESWVYRTMVAREGAIPPLVAFSQSHSNRPRHKAEKLIELLRQPRSGN-GAGRS 1002 LV +L S S + + A EIR L+ N ENRV I + GAI PL+SLL S L QE+ VTA+LNLS+ + NK +I GA++PLV L TG AKEN+A +L LS + +R IG++ AI LV LL G RGKKDAA+AL+ + T +NK R V+A ++ LVEL+ D MVDKAV +++ + V EGR A+V EGGIP+LVE V++G+QR KE A VLLQ+C S + T+V +EGAIPPLVA SQS + R + KA++L+ R R GRS Sbjct: 477 LVEDLKSGSNKVKTAAAAEIRHLTINSIENRVHIGRCGAITPLLSLLYSEEKLT-QEHAVTALLNLSISELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIGQSNAAIQALVNLLGKGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLVELL-DPDLEMVDKAVALLANLSAVGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTLVLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFRNQRDARMKKGRS 760
BLAST of Vigun09g232000.1 vs. DB:Swiss
Match: PUB12_ORYSJ (U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 5.885e-36 Identity = 116/285 (40.70%), Postives = 176/285 (61.75%), Query Frame = 1 Query: 151 LVLNLSSCSIEDQKQATMEIRLLSKNKEENRVKIAKAGAIEPXXXXXXXXXXXXXQEYVVTAILNLSLCDENKELINSSGAVKPLVRALETGTPTAKENAACALLRLSQREEDRVAIGRAGAIPPXXXXXXXXXXXXXXDAATALYAVCSTKENKVRAVRAGVMRALVELMADLGSSMXXXXXXXXXXXXXXXXXXXXXXXXXXIPVLVEIVEVGTQRQKEIAVGVLLQICEESWVYRTMVAREGAI-PPLVAFSQSHSNRPRHKAEKLIELLRQPR----SGNG 990 L+ L S + ++Q+ A EIRLL+K NR+ IA+AGAI PL+ L SSSD + QE+ VTA+LNLS+ + NK I S A+ +V L+TG+ +ENAA L LS +E++V IG AGAIPPL+ LL G RGKKDAATA++ +C + NKVRAV+AG++ L+ + D M+D+A+ ++S++ G EG+ + IP LVE+++ G+ R +E A +L +C +T+ A+ + L S++ ++R + KA ++EL+ Q GNG Sbjct: 328 LMNRLRSGNQDEQRAAAGEIRLLAKRNVNNRICIAEAGAI-PLLVNLLSSSDPRTQEHAVTALLNLSIHENNKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAGAIPPLINLLCDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLSILAGNPEGKIVIARSEPIPPLVEVIKTGSPRNRENAAAILWLLCSAD-TEQTLAAKAAGVEDALKELSETGTDRAKRKASSILELMHQANEDSLKGNG 610
BLAST of Vigun09g232000.1 vs. DB:Swiss
Match: SL11_ORYSJ (E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL11 PE=1 SV=2) HSP 1 Score: 136.732 bits (343), Expect = 1.986e-34 Identity = 117/275 (42.55%), Postives = 173/275 (62.91%), Query Frame = 1 Query: 142 IRHLVLNLSSCSIEDQKQATMEIRLLSKNKEENRVKIAKAGAIEPXXXXXXXXXXXXXQEYVVTAILNLSLCDENKELINSSGAVKPLVRALETGTPTAKENAACALLRLSQREEDRVAIGRAGAIPPXXXXXXXXXXXXXXDAATALYAVCSTKENKVRAVRAGVMRALVELMADLGSSMXXXXXXXXXXXXXXXXXXXXXXXXXXIPVLVEIVEVGTQRQKEIAVGVLLQIC--EESWVYRTMVAREGAIPPLVAFSQSHSNRPRHKAEKLIE 960 I L+ L S E+Q+ A E+RLL+K NR+ IA+AGAI PL+ L SSSDL+ QE+ VTA+LNLS+ ++NK I SSGAV +V L+ G+ A+ENAA L LS +E +V IG GAIP LV LL G RGKKDAA AL+ +C + NK RA+RAG++ ++ L+ + +++D+A+ ++S++ EG+AA+ +PVLVE++ GT R +E A V+L +C E V+ G + PL + + ++R + KA +L+E Sbjct: 369 IDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAI-PLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQLLE 642
BLAST of Vigun09g232000.1 vs. DB:Swiss
Match: SL11_ORYSI (Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2) HSP 1 Score: 136.732 bits (343), Expect = 1.986e-34 Identity = 117/275 (42.55%), Postives = 173/275 (62.91%), Query Frame = 1 Query: 142 IRHLVLNLSSCSIEDQKQATMEIRLLSKNKEENRVKIAKAGAIEPXXXXXXXXXXXXXQEYVVTAILNLSLCDENKELINSSGAVKPLVRALETGTPTAKENAACALLRLSQREEDRVAIGRAGAIPPXXXXXXXXXXXXXXDAATALYAVCSTKENKVRAVRAGVMRALVELMADLGSSMXXXXXXXXXXXXXXXXXXXXXXXXXXIPVLVEIVEVGTQRQKEIAVGVLLQIC--EESWVYRTMVAREGAIPPLVAFSQSHSNRPRHKAEKLIE 960 I L+ L S E+Q+ A E+RLL+K NR+ IA+AGAI PL+ L SSSDL+ QE+ VTA+LNLS+ ++NK I SSGAV +V L+ G+ A+ENAA L LS +E +V IG GAIP LV LL G RGKKDAA AL+ +C + NK RA+RAG++ ++ L+ + +++D+A+ ++S++ EG+AA+ +PVLVE++ GT R +E A V+L +C E V+ G + PL + + ++R + KA +L+E Sbjct: 369 IDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAI-PLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQLLE 642 The following BLAST results are available for this feature:
BLAST of Vigun09g232000.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g232000.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g232000.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g232000.1; organism=Vigna unguiculata; type=mRNA; length=1666bpback to top protein sequence of Vigun09g232000.1_Vu_IT97K-499-35_v1.1 >Vigun09g232000.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g232000.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g232000.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=335bpback to top mRNA from alignment at Vu09:40338653..40340508- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun09g232000.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g232000.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g232000.1; organism=Vigna unguiculata; type=mRNA; length=1856bp; location=Sequence derived from: Vu09:40338653..40340508- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu09:40338653..40340508- >Vigun09g232000.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g232000.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g232000.1; organism=Vigna unguiculata; type=CDS; length=1005bp; location=Sequence derived from: Vu09:40338653..40340508- (Vigna unguiculataback to top |