Vigun10g122100.1

Transcript Overview
NameVigun10g122100.1
Unique NameVigun10g122100.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length912
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu10supercontigVu10:32969087..32969998 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuR061Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuL204Pisum sativum Cameor genome v1aPisum sativum
psvuL261Pisum sativum Cameor genome v1aPisum sativum
psvuL266Pisum sativum Cameor genome v1aPisum sativum
crvuL126Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvuL133Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL074Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL096Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL652Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL171Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuL176Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caivuL0267Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavuL588Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuL0007Cajanus cajan Asha genome v1.0Cajanus cajan
ccvuL1267Cajanus cajan Asha genome v1.0Cajanus cajan
ccvuL1274Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0132Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1165Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL290Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL423Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR071Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL475Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL449Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL591Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvuL602Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL548Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL009Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL014Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL172Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL181Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL622Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR040Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR053Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL149Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL157Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL544Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL137Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL352Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL176Cicer arietinum
carvuL541Cicer arietinum
ccavuL003Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL512Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR073Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR125Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL315Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL607Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL611Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL070Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL082Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL570Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR039Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR054Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan03g060200Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Phvul.008G073100.2Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
jg15264.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Ca_06501.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
evm.model.Chr10.1191Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigan.09G146300.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Ca_16384Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vfaba.Hedin2.R1.4g026920.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Psat04G0512900-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Cr_03735.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vum_09G00867.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-XM_014660658.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
jg11015.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Phvul.010G089900.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_012713722.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigst.09G081000.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vfaba.Tiffany.R1.5g053760.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat3g112560.1Pisum sativum Cameor genome v1aPisum sativum
Va03G016330.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_004510796.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-KK1_021287Cajanus cajan Asha genome v1.0Cajanus cajan
Vigst.04G067400.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Cr_22631.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Phvul.010G093400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Ca_06271Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Cc_v2.0_16710.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
PvulFLAVERTChr10.1000722Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Va11G014110.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-TanjilR_14590Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
PvulFLAVERTChr08.1000440Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Cc_v2.0_02197.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
LR48_mrnaVigan11g038300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-XM_014660649.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Psat4g152560.1Pisum sativum Cameor genome v1aPisum sativum
rna-KK1_018965Cajanus cajan Asha genome v1.0Cajanus cajan

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun05g076300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun10g122100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun10g122100Vigun10g122100_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun10g122100.1Vigun10g122100.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun10g122100.1_Vu_IT97K-499-35_v1.1Vigun10g122100.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun10g122100.1.v1.1.five_prime_UTR.1Vigun10g122100.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun10g122100.1.v1.1.CDS.1Vigun10g122100.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun10g122100.1.v1.1.three_prime_UTR.1Vigun10g122100.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


Homology
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BLAST of Vigun10g122100.1 vs. DB:Swiss
Match: BAP2_ARATH (BON1-associated protein 2 OS=Arabidopsis thaliana OX=3702 GN=BAP2 PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.643e-10
Identity = 43/125 (34.40%), Postives = 71/125 (56.80%), Query Frame = 1 
Query:   16 RTLEITVISGENVRV-----KEDAYVVVRAESLNCCTTRTAKDDGTNFLSWNEKFLLEVPVHA--RSITFEV--QCSKFKGFRPLGVARIAASDFLGGGAVPENQLQQLSYGLRDWEGKRNGVIH 363
            R+LEI VIS E ++V     K+  Y VVR +  +  +     + G ++  W ++F +E+P++A  R I+ EV  + S     + +G A+I  +DF+GG A P+  L  LSY LRD  G + G+++
Sbjct:    8 RSLEIEVISAEGLKVDRKPLKKKTYSVVRIDEKSWASK--VDELGGSYPIWKDRFDMEMPINASVRFISIEVYYRTSGSGRDKNVGYAKIPVTDFMGGFA-PQGHLNFLSYRLRDEYGDKCGIVN 129
The following BLAST results are available for this feature:
BLAST of Vigun10g122100.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
BAP2_ARATH1.643e-1034.40BON1-associated protein 2 OS=Arabidopsis thaliana ... [more]
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000008C2 domainSMARTSM00239C2_3ccoord: 7..100
e-value: 4.1E-10
score: 49.6
IPR000008C2 domainPFAMPF00168C2coord: 7..92
e-value: 1.3E-6
score: 28.6
IPR035892C2 domain superfamilyGENE3D2.60.40.150coord: 3..139
e-value: 1.0E-8
score: 37.3
NoneNo IPR availableCDDcd04051C2_SRC2_likecoord: 7..122
e-value: 3.78586E-30
score: 105.005
NoneNo IPR availableSUPERFAMILY49562C2 domain (Calcium/lipid-binding domain, CaLB)coord: 7..136

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun10g122100.1_Vu_IT97K-499-35_v1.1 ID=Vigun10g122100.1_Vu_IT97K-499-35_v1.1; Name=Vigun10g122100.1; organism=Vigna unguiculata; type=mRNA; length=912bp
ATTAGAGTAAAGAAGAAGGTCAAAGTCAAAGTCAAAAACCAGAAGTTAAA
CACTGAAACCGCAAACCAATTTCGCTCTTTCTTTCTACGTTCCGATAATC
CAAACCAACTCTATAAATAACAACCTCAGAAAAAACCCAACAACAAAACA
TAGAATTTTCAGAAGTGAATATCTACATTAATTCATTCTTTTCATCATCT
TTTACCTCTCTCAAGTTCAAACCTTGAAACATAAAACATGACAGTGAGAT
CACGTACGCTAGAAATCACCGTTATCTCCGGCGAAAACGTGCGCGTAAAG
GAGGACGCATACGTCGTCGTTCGGGCGGAGTCGTTGAACTGCTGCACCAC
CAGAACGGCCAAAGACGACGGCACCAACTTCCTCTCGTGGAACGAGAAGT
TCCTGTTGGAAGTCCCGGTGCATGCAAGATCGATCACATTCGAGGTCCAA
TGCAGCAAATTCAAGGGTTTTCGCCCACTTGGGGTCGCCAGAATCGCTGC
CTCCGACTTCCTCGGCGGCGGCGCCGTCCCGGAAAATCAGTTGCAACAGT
TGAGTTACGGGTTGAGGGACTGGGAAGGGAAGAGAAACGGGGTCATTCAC
TTCGCCGTCAGAGTGGCACCTCCGGCGCCACCGGTGGAGGAATGTCTGAA
GCCCGCCGTGGGACAGGCGGTGACCGGAATGGGTTGCGGTGATCGTGATC
GAATCAAGGTCGGTGGCAAGAGCAAGGGAGTTGTCGTTGGTGTGCCACTT
TGGTGGAACCACCCAAACGTTGTTTAGAAAttaattttcatttttttatt
tattatatattattgttactatcattTGTATAACGGTCAAATATCATTTT
CAATTGTGAGAAAGATTATCAATCTAGATTTATTTCTACATAAGTTATAT
AAATTTAATTTT
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protein sequence of Vigun10g122100.1_Vu_IT97K-499-35_v1.1

>Vigun10g122100.1_Vu_IT97K-499-35_v1.1 ID=Vigun10g122100.1_Vu_IT97K-499-35_v1.1; Name=Vigun10g122100.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=180bp
MTVRSRTLEITVISGENVRVKEDAYVVVRAESLNCCTTRTAKDDGTNFLS
WNEKFLLEVPVHARSITFEVQCSKFKGFRPLGVARIAASDFLGGGAVPEN
QLQQLSYGLRDWEGKRNGVIHFAVRVAPPAPPVEECLKPAVGQAVTGMGC
GDRDRIKVGGKSKGVVVGVPLWWNHPNVV*
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mRNA from alignment at Vu10:32969087..32969998-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun10g122100.1_Vu_IT97K-499-35_v1.1 ID=Vigun10g122100.1_Vu_IT97K-499-35_v1.1; Name=Vigun10g122100.1; organism=Vigna unguiculata; type=mRNA; length=912bp; location=Sequence derived from: Vu10:32969087..32969998- (Vigna unguiculata
ATTAGAGTAAAGAAGAAGGTCAAAGTCAAAGTCAAAAACCAGAAGTTAAA
CACTGAAACCGCAAACCAATTTCGCTCTTTCTTTCTACGTTCCGATAATC
CAAACCAACTCTATAAATAACAACCTCAGAAAAAACCCAACAACAAAACA
TAGAATTTTCAGAAGTGAATATCTACATTAATTCATTCTTTTCATCATCT
TTTACCTCTCTCAAGTTCAAACCTTGAAACATAAAACATGACAGTGAGAT
CACGTACGCTAGAAATCACCGTTATCTCCGGCGAAAACGTGCGCGTAAAG
GAGGACGCATACGTCGTCGTTCGGGCGGAGTCGTTGAACTGCTGCACCAC
CAGAACGGCCAAAGACGACGGCACCAACTTCCTCTCGTGGAACGAGAAGT
TCCTGTTGGAAGTCCCGGTGCATGCAAGATCGATCACATTCGAGGTCCAA
TGCAGCAAATTCAAGGGTTTTCGCCCACTTGGGGTCGCCAGAATCGCTGC
CTCCGACTTCCTCGGCGGCGGCGCCGTCCCGGAAAATCAGTTGCAACAGT
TGAGTTACGGGTTGAGGGACTGGGAAGGGAAGAGAAACGGGGTCATTCAC
TTCGCCGTCAGAGTGGCACCTCCGGCGCCACCGGTGGAGGAATGTCTGAA
GCCCGCCGTGGGACAGGCGGTGACCGGAATGGGTTGCGGTGATCGTGATC
GAATCAAGGTCGGTGGCAAGAGCAAGGGAGTTGTCGTTGGTGTGCCACTT
TGGTGGAACCACCCAAACGTTGTTTAGAAATTAATTTTCATTTTTTTATT
TATTATATATTATTGTTACTATCATTTGTATAACGGTCAAATATCATTTT
CAATTGTGAGAAAGATTATCAATCTAGATTTATTTCTACATAAGTTATAT
AAATTTAATTTT
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Coding sequence (CDS) from alignment at Vu10:32969087..32969998-

>Vigun10g122100.1_Vu_IT97K-499-35_v1.1 ID=Vigun10g122100.1_Vu_IT97K-499-35_v1.1; Name=Vigun10g122100.1; organism=Vigna unguiculata; type=CDS; length=540bp; location=Sequence derived from: Vu10:32969087..32969998- (Vigna unguiculata
ATGACAGTGAGATCACGTACGCTAGAAATCACCGTTATCTCCGGCGAAAA
CGTGCGCGTAAAGGAGGACGCATACGTCGTCGTTCGGGCGGAGTCGTTGA
ACTGCTGCACCACCAGAACGGCCAAAGACGACGGCACCAACTTCCTCTCG
TGGAACGAGAAGTTCCTGTTGGAAGTCCCGGTGCATGCAAGATCGATCAC
ATTCGAGGTCCAATGCAGCAAATTCAAGGGTTTTCGCCCACTTGGGGTCG
CCAGAATCGCTGCCTCCGACTTCCTCGGCGGCGGCGCCGTCCCGGAAAAT
CAGTTGCAACAGTTGAGTTACGGGTTGAGGGACTGGGAAGGGAAGAGAAA
CGGGGTCATTCACTTCGCCGTCAGAGTGGCACCTCCGGCGCCACCGGTGG
AGGAATGTCTGAAGCCCGCCGTGGGACAGGCGGTGACCGGAATGGGTTGC
GGTGATCGTGATCGAATCAAGGTCGGTGGCAAGAGCAAGGGAGTTGTCGT
TGGTGTGCCACTTTGGTGGAACCACCCAAACGTTGTTTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom
IPR035892C2_domain_sf