Transcript Overview
| Name | Vigun11g125700.1 |
|---|
| Unique Name | Vigun11g125700.1_Vu_IT97K-499-35_v1.1 |
|---|
| Type | mRNA |
|---|
| Organism | Vigna unguiculata (cowpea) |
|---|
| Sequence length | 2598 |
|---|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun11g125700.1 | Vigun11g125700.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
| Vigun11g125700.1_Vu_IT97K-499-35_v1.1 | Vigun11g125700.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun11g125700.1.v1.1.five_prime_UTR.1 | Vigun11g125700.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun11g125700.1.v1.1.CDS.1 | Vigun11g125700.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun11g125700.1.v1.1.three_prime_UTR.1 | Vigun11g125700.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR007608 | Senescence regulator S40 | PFAM | PF04520 | Senescence_reg | coord: 39..234
e-value: 2.3E-43
score: 148.9 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 77..91 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 58..92 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 58..76 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 120..135 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..33 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 120..151 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun11g125700.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g125700.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g125700.1; organism=Vigna unguiculata; type=mRNA; length=2598bp
ATTTTTTGTTAAAAGGAAAGAAAAAGCTTAGCCATTAGCCCCTTCAGTCT
CGTCACCGTTCACCACTCAGTGCTCTGTTATTCCTATTTTCTTTCCGTTT
CTCTCGGTGTTCCAAACCGAACAGACATGGATCCATTCGGCCCGAACCGT
CTCCCGAACCGAAAGCCCTCCGCCACAGAGCGCTACCTTGGCGTTCCATC
TCACGCGCCGCCGCCCTCCCCGTTCGTCGCCACCAACGTTGAGCTCCAAG
AGGATGACGTAGTTTTCTTCAACGGCGACTACCACACGGATTTAAACCAC
TACCAGGCCTCCACTCCTTCCTCTTCCACGTCCTCCTCTGTCTccgccac
acccaaccaccaccacctccatcaccaccacaaccacagccaccacTCTC
ATGGCATACTCGCCGCACTTCCCGAGAACGAAACCTCCCGCAGCCTCCGA
AACGTTTCGCAGCACTTCCACAAGGCCTCAATCTCCTCCATATCCTCCGC
TTCCTCTTCTTCCTCTTCCTCGCGCGTCATTCCCGCCATCCCGCGGCCTC
CACCTCCGGCGCAACCATCCTCCTTCAAGTTTCACCAGTCCGCGCCGGTG
AACGTCCCGATCTTGCCGGTGAAGGCACGGCGGAGGCAGTGTGAGTTtga
tgatgacgaggaggaggatgaagatgaggagatggtgCCGCCGCACGAAA
TCGTGGCAAGGAACTCAGCGCAATCCCCGATTCTTGCTTATTCGGTTATG
GAAGGGATAGGGAGAACGCTGAAAGGGAGGGACCTGCGTCAGGTTCGAAA
TGCTGTTTGGCGCCAAACAGGTTTCCTCGGTTGATTCATTCAATTCAAAT
TGTTCGATTAGTGTTTAATTTTAACTTATTGATTGAATTCTATTCTACTG
AATCTGGATTTGTCCTGAACTAGTGAATCTCTTTATCTATCGCAACTCCT
AGGTTCCTCACTTCCTCTTTTCGTTTCGCTTTGTTTGCCTGAGAAAATGT
GAATCATGCGCTTACCTACAGAATGAAAAAATAATTAATTAACGATGGTG
AAGTATATAGAGAAAATGAATTTTAGTTTGTCTAAGAACGAGAGTGTGTA
ACCCCGGACCATCTATTCTCTCATGGAACTGTTGAAGCTCTGGTGTCATG
CTGTGATCTGACTATTTCAAAAGTTGTAAGTAATTATGTTAAGATTAGGG
AATAATTTTATATTCACATCTACTTTCTAGAATGAGTTATATTGACATCT
ACTTTCTAGAATGAGTTATGTAAAATTGGGCATTTAGATGTTGTGGAATG
CTGATGATTTAAGGAGGTTATGCAAATGTAGTAATGGACTATGTAATCTC
TGACATACTATGACTTCTTGGATGATTTAATGCATCTATCTTCCTAGGGT
TGAGTGTGGTTTATTTCTCTGCTTTAAACATGTGACCATGGAATTGGAAG
CTCCAACTGGACCCTAAATCTAATGAATATTGTTGGTACATTCAAGCTGT
CATGCTCAGATTTGGTCTAGCTCCCCTTTTCAGGGTTAATGGTAAATGGA
TAACTTCTCCTTTAACCTGTAGTTCCATTGAATTTCAATGTTTGGTCATC
TAGTAAAAAACAGATTGGTCAGGGCATTGATTACCCAACGTTGCTTTGCC
CCCACAGTGAACAGTGAGATATATGTATCTGGCAAATTCGGATATGGTGG
TTCTGTTTGGTCTTGTTTATTGGGGACCTGATTTATTTCAGTGTTGATGA
CACTGATTTGTATTATCGGCAATAATTTACAGACTAAAAACAGGTAGGGG
TGGAAATATTGTTACTCTGGTTACGTAGGTTAGCAACTATGAAGAAAACT
TAATCTGTGCTTATGAATGAAAGAATGGAATGGAAATAGGGATGACAATC
AAACCCAAATTTGATGAGTATTAATATAAGTTTCTTGCAATGGATCTGAT
CCTGTATAGATATTTACCAAGACTTTTTTCGTGTATGGATACAACATTAT
AGGTGTTATAGTACTTAAACTTGCGAAAACCTGCATAATGTATTTATGAT
TAGAAGATGAAAGATTTTTATGTATTTTGGAATATTTTATAAGTAGAAAT
GAATTATCATTGAATATATTTGAATGAAGAGAATGTACTTCAATttatat
tttcttttattggcttattattattattaatgtattattatAGTAACATT
TGTTCTTTGCTAGTTGGTTGAACAAATGCATTATGTTATTTTGAAATACC
ATATTCAAGTTTAACTGTGATATGTAGATGGTTTCGGGTCTGAGTATATG
AATACTTAAGGTTACAGATACAATAGCAATGTCGATATGGGAACATTCTC
TTAAGTACCAATCTATTCTCGTCCTTAAATAGACGAGAAAAGATGAGGGA
TGGTTTAGAGCTTTTGGACATACATTTTAACTtctatatctgtgtttctc
tctctccctctctctctattcctatctcactTAAACGTAAAAGGATAACC
TAAAGTCAGACAAATGTGATAATAAGAGTCTTGTTTTTGTGGCCATTATA
TGAAATTCTGTTTGAAGATGTTCTTAATACCTTCTATCTTCTTTAGTA back to topprotein sequence of Vigun11g125700.1_Vu_IT97K-499-35_v1.1 >Vigun11g125700.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g125700.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g125700.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=236bp
MDPFGPNRLPNRKPSATERYLGVPSHAPPPSPFVATNVELQEDDVVFFNG
DYHTDLNHYQASTPSSSTSSSVSATPNHHHLHHHHNHSHHSHGILAALPE
NETSRSLRNVSQHFHKASISSISSASSSSSSSRVIPAIPRPPPPAQPSSF
KFHQSAPVNVPILPVKARRRQCEFDDDEEEDEDEEMVPPHEIVARNSAQS
PILAYSVMEGIGRTLKGRDLRQVRNAVWRQTGFLG* back to topmRNA from alignment at Vu11:33304088..33306685- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun11g125700.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g125700.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g125700.1; organism=Vigna unguiculata; type=mRNA; length=2598bp; location=Sequence derived from: Vu11:33304088..33306685- (Vigna unguiculata
ATTTTTTGTTAAAAGGAAAGAAAAAGCTTAGCCATTAGCCCCTTCAGTCT
CGTCACCGTTCACCACTCAGTGCTCTGTTATTCCTATTTTCTTTCCGTTT
CTCTCGGTGTTCCAAACCGAACAGACATGGATCCATTCGGCCCGAACCGT
CTCCCGAACCGAAAGCCCTCCGCCACAGAGCGCTACCTTGGCGTTCCATC
TCACGCGCCGCCGCCCTCCCCGTTCGTCGCCACCAACGTTGAGCTCCAAG
AGGATGACGTAGTTTTCTTCAACGGCGACTACCACACGGATTTAAACCAC
TACCAGGCCTCCACTCCTTCCTCTTCCACGTCCTCCTCTGTCTCCGCCAC
ACCCAACCACCACCACCTCCATCACCACCACAACCACAGCCACCACTCTC
ATGGCATACTCGCCGCACTTCCCGAGAACGAAACCTCCCGCAGCCTCCGA
AACGTTTCGCAGCACTTCCACAAGGCCTCAATCTCCTCCATATCCTCCGC
TTCCTCTTCTTCCTCTTCCTCGCGCGTCATTCCCGCCATCCCGCGGCCTC
CACCTCCGGCGCAACCATCCTCCTTCAAGTTTCACCAGTCCGCGCCGGTG
AACGTCCCGATCTTGCCGGTGAAGGCACGGCGGAGGCAGTGTGAGTTTGA
TGATGACGAGGAGGAGGATGAAGATGAGGAGATGGTGCCGCCGCACGAAA
TCGTGGCAAGGAACTCAGCGCAATCCCCGATTCTTGCTTATTCGGTTATG
GAAGGGATAGGGAGAACGCTGAAAGGGAGGGACCTGCGTCAGGTTCGAAA
TGCTGTTTGGCGCCAAACAGGTTTCCTCGGTTGATTCATTCAATTCAAAT
TGTTCGATTAGTGTTTAATTTTAACTTATTGATTGAATTCTATTCTACTG
AATCTGGATTTGTCCTGAACTAGTGAATCTCTTTATCTATCGCAACTCCT
AGGTTCCTCACTTCCTCTTTTCGTTTCGCTTTGTTTGCCTGAGAAAATGT
GAATCATGCGCTTACCTACAGAATGAAAAAATAATTAATTAACGATGGTG
AAGTATATAGAGAAAATGAATTTTAGTTTGTCTAAGAACGAGAGTGTGTA
ACCCCGGACCATCTATTCTCTCATGGAACTGTTGAAGCTCTGGTGTCATG
CTGTGATCTGACTATTTCAAAAGTTGTAAGTAATTATGTTAAGATTAGGG
AATAATTTTATATTCACATCTACTTTCTAGAATGAGTTATATTGACATCT
ACTTTCTAGAATGAGTTATGTAAAATTGGGCATTTAGATGTTGTGGAATG
CTGATGATTTAAGGAGGTTATGCAAATGTAGTAATGGACTATGTAATCTC
TGACATACTATGACTTCTTGGATGATTTAATGCATCTATCTTCCTAGGGT
TGAGTGTGGTTTATTTCTCTGCTTTAAACATGTGACCATGGAATTGGAAG
CTCCAACTGGACCCTAAATCTAATGAATATTGTTGGTACATTCAAGCTGT
CATGCTCAGATTTGGTCTAGCTCCCCTTTTCAGGGTTAATGGTAAATGGA
TAACTTCTCCTTTAACCTGTAGTTCCATTGAATTTCAATGTTTGGTCATC
TAGTAAAAAACAGATTGGTCAGGGCATTGATTACCCAACGTTGCTTTGCC
CCCACAGTGAACAGTGAGATATATGTATCTGGCAAATTCGGATATGGTGG
TTCTGTTTGGTCTTGTTTATTGGGGACCTGATTTATTTCAGTGTTGATGA
CACTGATTTGTATTATCGGCAATAATTTACAGACTAAAAACAGGTAGGGG
TGGAAATATTGTTACTCTGGTTACGTAGGTTAGCAACTATGAAGAAAACT
TAATCTGTGCTTATGAATGAAAGAATGGAATGGAAATAGGGATGACAATC
AAACCCAAATTTGATGAGTATTAATATAAGTTTCTTGCAATGGATCTGAT
CCTGTATAGATATTTACCAAGACTTTTTTCGTGTATGGATACAACATTAT
AGGTGTTATAGTACTTAAACTTGCGAAAACCTGCATAATGTATTTATGAT
TAGAAGATGAAAGATTTTTATGTATTTTGGAATATTTTATAAGTAGAAAT
GAATTATCATTGAATATATTTGAATGAAGAGAATGTACTTCAATTTATAT
TTTCTTTTATTGGCTTATTATTATTATTAATGTATTATTATAGTAACATT
TGTTCTTTGCTAGTTGGTTGAACAAATGCATTATGTTATTTTGAAATACC
ATATTCAAGTTTAACTGTGATATGTAGATGGTTTCGGGTCTGAGTATATG
AATACTTAAGGTTACAGATACAATAGCAATGTCGATATGGGAACATTCTC
TTAAGTACCAATCTATTCTCGTCCTTAAATAGACGAGAAAAGATGAGGGA
TGGTTTAGAGCTTTTGGACATACATTTTAACTTCTATATCTGTGTTTCTC
TCTCTCCCTCTCTCTCTATTCCTATCTCACTTAAACGTAAAAGGATAACC
TAAAGTCAGACAAATGTGATAATAAGAGTCTTGTTTTTGTGGCCATTATA
TGAAATTCTGTTTGAAGATGTTCTTAATACCTTCTATCTTCTTTAGTA back to topCoding sequence (CDS) from alignment at Vu11:33304088..33306685- >Vigun11g125700.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g125700.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g125700.1; organism=Vigna unguiculata; type=CDS; length=708bp; location=Sequence derived from: Vu11:33304088..33306685- (Vigna unguiculata
ATGGATCCATTCGGCCCGAACCGTCTCCCGAACCGAAAGCCCTCCGCCAC
AGAGCGCTACCTTGGCGTTCCATCTCACGCGCCGCCGCCCTCCCCGTTCG
TCGCCACCAACGTTGAGCTCCAAGAGGATGACGTAGTTTTCTTCAACGGC
GACTACCACACGGATTTAAACCACTACCAGGCCTCCACTCCTTCCTCTTC
CACGTCCTCCTCTGTCTCCGCCACACCCAACCACCACCACCTCCATCACC
ACCACAACCACAGCCACCACTCTCATGGCATACTCGCCGCACTTCCCGAG
AACGAAACCTCCCGCAGCCTCCGAAACGTTTCGCAGCACTTCCACAAGGC
CTCAATCTCCTCCATATCCTCCGCTTCCTCTTCTTCCTCTTCCTCGCGCG
TCATTCCCGCCATCCCGCGGCCTCCACCTCCGGCGCAACCATCCTCCTTC
AAGTTTCACCAGTCCGCGCCGGTGAACGTCCCGATCTTGCCGGTGAAGGC
ACGGCGGAGGCAGTGTGAGTTTGATGATGACGAGGAGGAGGATGAAGATG
AGGAGATGGTGCCGCCGCACGAAATCGTGGCAAGGAACTCAGCGCAATCC
CCGATTCTTGCTTATTCGGTTATGGAAGGGATAGGGAGAACGCTGAAAGG
GAGGGACCTGCGTCAGGTTCGAAATGCTGTTTGGCGCCAAACAGGTTTCC
TCGGTTGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007608 | Senescence_reg_S40 |
|
