Vigun11g127100.1

Transcript Overview


Name	Vigun11g127100.1
Unique Name	Vigun11g127100.1_Vu_IT97K-499-35_v1.1
Type	mRNA
Organism	Vigna unguiculata (cowpea)
Sequence length	2047

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Vu11	supercontig	Vu11:33417345..33419776 +	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	2019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	2019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot	2019-10-17

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
vuvuL003	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
crvuL243	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
pvvuL156	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
crvuL625	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
cavuL177	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
caivuL0268	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
caivuL0710	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
cavuL485	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ccvuL0993	Cajanus cajan Asha genome v1.0	Cajanus cajan
anvuL0263	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvuL1084	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
asvuL094	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
asvuL430	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
tifvuL604	Vicia faba cv. Tiffany genome v1.0	Vicia faba
tifvuL685	Vicia faba cv. Tiffany genome v1.0	Vicia faba
vfhvuL562	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
vfhvuL642	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
vrvvuL198	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
vssvuL182	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vssvuL450	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
canvuL159	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
avjvuL046	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjvuL359	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
carvuL178		Cicer arietinum
carvuL448		Cicer arietinum
ccavuL272	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
vstvuL325	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vstvuL454	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vasvuL344	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
vasvuL473	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
pvfvuL011	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
pvfvuL141	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris

Orthologs


Gene/Transcript	Assembly	Species
Vfaba.Hedin2.R1.5g149000.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
rna-TanjilR_23655	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
Ca_17914.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
Ca_07847.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
Vfaba.Hedin2.R1.6g019320.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
LR48_mrnaVigan03g242100	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Ca_00792	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
Phvul.011G093800.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Cr_05391.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
Vigan.04G345300.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Vfaba.Tiffany.R1.6g014320.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
rna-XM_014637401.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
rna-TanjilR_17087	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
jg31756.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Cc_v2.0_07906.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
Cr_16677.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
Ca_16487	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
Vfaba.Tiffany.R1.5g119160.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
LR48_mrnaVigan08g138100	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Vigst.06G148900.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
PvulFLAVERTChr01.1001290	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
Vigan.06G166300.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Va03G075220.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Va08G059090.4	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
rna-KK1_022376	Cajanus cajan Asha genome v1.0	Cajanus cajan
jg7753.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
rna-XM_027332435.1	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
PvulFLAVERTChr11.1000593	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
Vigst.04G223300.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Vigun01g173300.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Vigun11g127100	Vigun11g127100_Vu_IT97K-499-35_v1.1	Vigna unguiculata	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Vigun11g127100.1_Vu_IT97K-499-35_v1.1	Vigun11g127100.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	polypeptide
Vigun11g127100.1	Vigun11g127100.1_Vu_IT97K-499-35_v1.1-protein	Vigna unguiculata	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vigun11g127100.1.v1.1.five_prime_UTR.1	Vigun11g127100.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	five_prime_UTR
Vigun11g127100.1.v1.1.five_prime_UTR.2	Vigun11g127100.1.v1.1.five_prime_UTR.2_Vu_IT97K-499-35_v1.1	Vigna unguiculata	five_prime_UTR
Vigun11g127100.1.v1.1.five_prime_UTR.3	Vigun11g127100.1.v1.1.five_prime_UTR.3_Vu_IT97K-499-35_v1.1	Vigna unguiculata	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vigun11g127100.1.v1.1.CDS.1	Vigun11g127100.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Vigun11g127100.1.v1.1.three_prime_UTR.1	Vigun11g127100.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1	Vigna unguiculata	three_prime_UTR

Homology

[Close]

BLAST of Vigun11g127100.1 vs. DB:Swiss
Match: FBL34_ARATH (F-box/LRR-repeat protein At1g67190 OS=Arabidopsis thaliana OX=3702 GN=At1g67190 PE=2 SV=1)

HSP 1 Score: 627.091 bits (1616), Expect = 0.000e+0
Identity = 311/419 (74.22%), Postives = 363/419 (86.63%), Query Frame = 1

Query:    1 MDQLPVEVIGNILSHLRAARDVVIASATCRKWRQACCKHLHTLSFSSKDWPIYRDLTTTRLEILITQTIFQTSGLQALSILMEDVDEFSASTVTAWLLYTRETLRQLHYNVKTMPNVNILEICGRHKLEILDLAHNSIVGVEPNYQRFPCLKSLSLSYVSISALDLNLLVYACPKIEVLELVNPEIAMSDAQVTIELSSSTLKRVYVEAISLDKFILEADGLETLHLKDCALEFFELIGKGALKHFKIDDVSVIHLDIGETVEDLETVDISNFTIIWPKFYQMISRSSNLKRLRLWXXXXXXXXXXXXXXTIATCFPYLSHLSLSYDVRYGVLHYGLQGSSDLENVVVLELGWTVINDLFSHWVEGLLKRCPNLKKLVIHGVVSEAKSHEECQMLASFTTAMVEMMRRYIHVDPHFKYE 1257
            MD LPVEVIGNILS L  ARDVVIASATCRKWR+AC KHL TLSF+S DWP YRDLTT RLEILITQTIFQT GLQ LSI+M+D ++FSA+TV AWL+YTR+TLR+L YNV+T PNVNILEICGR KLE L LAHNSI GVEP++QRFPCLKSLSLSYVSISALDLNLL+ ACP IE LELV+ EIAMSDAQVTIELSS TLK VY + ISLDKFILEAD +E LH+KDC LE FELIG G LKHFK+DDVSVIHLDI ET E LE VD+++FT++WPKFYQMISRS  LK+LRLWDV+FDD+DE++D+E+IA  F +L+HLSLSYD++ G  HY LQG++ LENV VLELGWTVIND+FS WVE LL+RCPNLKKL+I+GVVSE K+  +CQ+LA+FT ++V++MR+YIHV+  F+YE
Sbjct:    1 MDYLPVEVIGNILSRLGGARDVVIASATCRKWREACRKHLQTLSFNSADWPFYRDLTTNRLEILITQTIFQTMGLQGLSIMMDDANKFSAATVIAWLMYTRDTLRRLSYNVRTTPNVNILEICGRQKLEALVLAHNSITGVEPSFQRFPCLKSLSLSYVSISALDLNLLLSACPMIESLELVSLEIAMSDAQVTIELSSPTLKSVYFDGISLDKFILEADSIEFLHMKDCVLELFELIGNGTLKHFKLDDVSVIHLDIMETSESLEVVDVNHFTMVWPKFYQMISRSQKLKKLRLWDVVFDDDDEIIDVESIAAGFSHLTHLSLSYDLKDGAAHYSLQGTTQLENVTVLELGWTVINDVFSIWVEELLRRCPNLKKLIIYGVVSETKTQGDCQILATFTWSIVQLMRKYIHVEVQFEYE 419

[Close]

BLAST of Vigun11g127100.1 vs. DB:Swiss
Match: FB2_ARATH (F-box protein At1g10780 OS=Arabidopsis thaliana OX=3702 GN=At1g10780 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 5.667e-7
Identity = 70/314 (22.29%), Postives = 138/314 (43.95%), Query Frame = 1

Query:    1 MDQLPVEVIGNILSHLRAARDVVIASATCRKWRQAC----CKHLHTLSFSSKDWPIYRDLTTTRLEILITQTIFQTSGLQALSILMEDVDEFSASTVTAWLLYTRETLRQLHYNVKTMPNVNILEICGRHKLEILDLAHN----SIVGV----EPNYQRFPCLKSLSLSYVSISALDLNLLVYACPKIEVLELVNPEIAMSDAQVTIELSSSTLKRVYVEAISLDKF-------ILEADGLETLHLKDCALEFFELIGKGALKHFKIDDVS--VIHLDIGETVEDLETVDISNFTIIWPKFYQMISRSSNLKRL 879
            MD LP  ++  ILS+L +ARDV   +   ++W+++         H  SF S        + T   + ++ + I  +  L+ L +       F++S + +W+++   +LR L   +  + +  ++ + G  KL+ + +A N     + GV     P +  FP L+SL +    +    L+  + ACP +  L L+  E   S   ++I+L        Y+E   LD +       +L +  L +L ++ C+  +  +     LK+  I  V+  V  +D    +  LE + I      W     ++ ++ ++K L
Sbjct:    1 MDSLPDAILQYILSYLTSARDVAACNCVSKRWKESTDSVKSVVFHRNSFESI-------METDDSDSIVRKMISSSRRLEELVV----YSPFTSSGLASWMMHVSSSLRLLELRMDNLASEEVV-VEGPLKLDCIGVAKNLEILKLWGVLMMSPPKWDMFPNLRSLEIVGAKMDDSSLSHALRACPNLSNLLLLACEGVKS---ISIDLP-------YLEHCKLDFYGQGNTLLVLTSQRLVSLDVQGCS--WIRVPETKFLKNLSISSVTGRVYMVDFN-NLSSLEALSIRGVQWCWDAICMILQQARDVKHL 289

The following BLAST results are available for this feature:

BLAST of Vigun11g127100.1 vs. DB:Swiss

BLAST of Vigun11g127100.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 2

Position :

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x 1


Match Name	E-value	Identity	Description
FBL34_ARATH	0.000e+0	74.22	F-box/LRR-repeat protein At1g67190 OS=Arabidopsis ...	[more]
FB2_ARATH	5.667e-7	22.29	F-box protein At1g10780 OS=Arabidopsis thaliana OX...	[more]

InterPro

Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 4..45 e-value: 2.2E-4 score: 30.5
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 2..39 e-value: 2.2E-7 score: 30.6
None	No IPR available	GENE3D	1.20.1280.50		coord: 1..43 e-value: 7.5E-7 score: 31.0
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 73..381
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 243..402 e-value: 4.7E-9 score: 37.6
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 98..233 e-value: 1.0E-7 score: 33.3
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 1..56

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Vu11:33417345..33419776+
coding sequence from alignment at Vu11:33417345..33419776+

mRNA sequence

>Vigun11g127100.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g127100.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g127100.1; organism=Vigna unguiculata; type=mRNA; length=2047bp
CAATAGAGATTAACACAAATTTTCAGACCAGAACAATTGTAGTATGTGTA
ACTGAAACGCGTAGGAATAAAATCTTGGGAAATCCTAAATCAAACTCAAA
CGAACCAACTTTGGTTTGGTTTGTTTGGTTTCAGACTATGAGATTTCACG
ACTCGTTCTCTGGTCCGATCGCTCTCTTTTTCTCTAACCCAATAGCAATC
AACAATAATCCTATTTCGTAATTCATTATTTTACAGCGAGAAGAGAAATC
GACGAGAGATGTTGAGCATTTTGCATCTGATGAAATGCATTGGAGTGATT
TCTGAGATATAGCGTTGTGAGGGGTTTCCAAGCTGGGAATTGCAGCATCA
TGGACCAGCTTCCTGTTGAAGTGATTGGGAACATTCTGTCTCACTTGAGG
GCTGCACGAGATGTGGTGATAGCCTCTGCAACATGCAGGAAATGGCGACA
AGCGTGCTGCAAACACCTTCATACCCTTTCATTCAGCTCCAAAGATTGGC
CCATTTATCGAGATTTGACGACTACCCGTCTCGAGATTTTGATCACACAA
ACCATTTTTCAGACCTCAGGGTTGCAGGCTCTCTCCATTCTGATGGAAGA
TGTGGATGAATTCTCGGCTTCAACGGTTACTGCTTGGCTCTTGTACACCA
GGGAAACTTTGAGGCAATTGCATTATAATGTCAAGACTATGCCTAATGTT
AACATTCTTGAAATATGTGGCAGGCACAAGCTGGAAATTTTAGATCTTGC
TCATAATTCTATTGTGGGGGTTGAGCCTAATTATCAGCGATTCCCTTGCT
TGAAGTCTCTTTCTCTGAGTTATGTCAGTATATCTGCATTGGATCTGAAT
CTTCTGGTATATGCATGTCCGAAGATTGAAGTTTTGGAGCTTGTGAATCC
TGAGATTGCAATGTCTGATGCACAGGTGACTATTGAATTGAGTAGCTCAA
CGCTGAAGAGGGTGTATGTAGAAGCTATCAGTTTGGACAAGTTTATATTG
GAGGCTGATGGGCTTGAGACCTTGCACTTGAAAGATTGTGCACTTGAGTT
CTTTGAACTCATTGGCAAGGGGGCCTTGAAGCATTTCAAGATTGATGATG
TTAGTGTTATACATCTTGATATTGGCGAGACAGTTGAGGATCTTGAGACT
GTGGATATCAGCAACTTCACAATTATATGGCCAAAGTTTTACCAGATGAT
TTCAAGATCATCAAATCTAAAGAGGCTTCGCCTCTGGGACGTGATGTTCG
ACGACGAGGATGAGGTTGTGGATATGGAAACAATTGCAACTTGCTTTCCT
TACCTCAGCCATTTATCTCTGAGTTATGATGTGAGATATGGAGTTCTTCA
CTATGGCTTACAAGGCTCTTCCGATCTAGAGAATGTTGTTGTGTTGGAGC
TTGGTTGGACTGTGATCAATGATCTTTTCTCCCATTGGGTTGAGGGGCTG
CTTAAACGCTGTCCCAATCTCAAGAAATTGGTGATTCATGGAGTTGTTTC
TGAGGCAAAGTCTCATGAAGAATGCCAGATGTTAGCCAGTTTCACCACAG
CAATGGTTGAGATGATGAGGAGATACATACATGTAGATCCACATTTTAAG
TATGAATAGGATTTTTGTTATATACCTTGCTATAGCTCATGCTTTCTATT
AAGTCTAATTGTGTAGGCACATTTGCAGGTAACTCATTCAATTCAAAAAG
TTTATCCTCAACTTTTAACTTGTTGTTTGGAATCTTCTGAAATCTGGGTG
ACTCACCAACAAAGATAGCTTCACGATACACATTCATAACTTCGACCACT
TCTTAGTAGACAAAAATGGCCACGAACTAATCTGCAAATTTTACACTTTC
ATTTCTGTTCTGGGAATTCTGATCTTATAATTAAGACTGTAAAAGTAAAT
CATGAAGGCATTGTAACAGATTCAAGTTTTTAGGTAAGAGTGTTGTTATT
GTAGCTGGCCTTCAATATCGTTGAAAGTATTTTTCTTAAGAGTTTCATAT
TCTTTTGTTTCTCTTGTATTTAGATCTATTTTCTTAGCAGTTTCATA

protein sequence of Vigun11g127100.1_Vu_IT97K-499-35_v1.1

>Vigun11g127100.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g127100.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g127100.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=420bp
MDQLPVEVIGNILSHLRAARDVVIASATCRKWRQACCKHLHTLSFSSKDW
PIYRDLTTTRLEILITQTIFQTSGLQALSILMEDVDEFSASTVTAWLLYT
RETLRQLHYNVKTMPNVNILEICGRHKLEILDLAHNSIVGVEPNYQRFPC
LKSLSLSYVSISALDLNLLVYACPKIEVLELVNPEIAMSDAQVTIELSSS
TLKRVYVEAISLDKFILEADGLETLHLKDCALEFFELIGKGALKHFKIDD
VSVIHLDIGETVEDLETVDISNFTIIWPKFYQMISRSSNLKRLRLWDVMF
DDEDEVVDMETIATCFPYLSHLSLSYDVRYGVLHYGLQGSSDLENVVVLE
LGWTVINDLFSHWVEGLLKRCPNLKKLVIHGVVSEAKSHEECQMLASFTT
AMVEMMRRYIHVDPHFKYE*

mRNA from alignment at Vu11:33417345..33419776+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Vigun11g127100.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g127100.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g127100.1; organism=Vigna unguiculata; type=mRNA; length=2432bp; location=Sequence derived from: Vu11:33417345..33419776+ (Vigna unguiculata
CAATAGAGATTAACACAAATTTTCAGACCAGAACAATTGTAGTATGTGTA
ACTGAAACGCGTAGGAATAAAATCTTGGGAAATCCTAAATCAAACTCAAA
CGAACCAACTTTGGTTTGGTTTGTTTGGTTTCAGACTATGAGATTTCACG
ACTCGTTCTCTGGTCCGATCGCTCTCTTTTTCTCTAACCCAATAGCAATC
AACAATAATCCTATTTCGTAATTCATTATTTTACAGGTGAACAACCATTT
TCTCTATCCTATACCCACTTTTTTCTGTTCTTTTACAATCAATTATTGTG
ATTACTACTGTTGTTGTTATTGTTGTTGTTGACGATTATGGTTTATTTAA
TTTAAATTCTGATCCTTAATTCTATTCCCCGAATCCCATTTGACCTGCTT
GATTAAATCTTAAATCTTGATTACTTCCCCTGATTTCGTGATTTCTGTGC
AAACTGATCCAGCGAGAAGAGAAATCGACGAGAGATGTTGAGCATTTTGC
ATCTGATGAAATGCATTGGAGTGATTTCTGAGGTTTCTTCCGAAATTGCT
GTTGAATTGAATTGAATTGAATTGAAGGATTTTAAAACAAGTTTTGTTTT
GTTGGTTTTTGTTTATGTTGGTTTTGTTTTTTTATTGTGGTGTTGGTTGG
TTCTTGAGAAAACAATACATAAGACAAAGGTTGTTTGATAGATATAGCGT
TGTGAGGGGTTTCCAAGCTGGGAATTGCAGCATCATGGACCAGCTTCCTG
TTGAAGTGATTGGGAACATTCTGTCTCACTTGAGGGCTGCACGAGATGTG
GTGATAGCCTCTGCAACATGCAGGAAATGGCGACAAGCGTGCTGCAAACA
CCTTCATACCCTTTCATTCAGCTCCAAAGATTGGCCCATTTATCGAGATT
TGACGACTACCCGTCTCGAGATTTTGATCACACAAACCATTTTTCAGACC
TCAGGGTTGCAGGCTCTCTCCATTCTGATGGAAGATGTGGATGAATTCTC
GGCTTCAACGGTTACTGCTTGGCTCTTGTACACCAGGGAAACTTTGAGGC
AATTGCATTATAATGTCAAGACTATGCCTAATGTTAACATTCTTGAAATA
TGTGGCAGGCACAAGCTGGAAATTTTAGATCTTGCTCATAATTCTATTGT
GGGGGTTGAGCCTAATTATCAGCGATTCCCTTGCTTGAAGTCTCTTTCTC
TGAGTTATGTCAGTATATCTGCATTGGATCTGAATCTTCTGGTATATGCA
TGTCCGAAGATTGAAGTTTTGGAGCTTGTGAATCCTGAGATTGCAATGTC
TGATGCACAGGTGACTATTGAATTGAGTAGCTCAACGCTGAAGAGGGTGT
ATGTAGAAGCTATCAGTTTGGACAAGTTTATATTGGAGGCTGATGGGCTT
GAGACCTTGCACTTGAAAGATTGTGCACTTGAGTTCTTTGAACTCATTGG
CAAGGGGGCCTTGAAGCATTTCAAGATTGATGATGTTAGTGTTATACATC
TTGATATTGGCGAGACAGTTGAGGATCTTGAGACTGTGGATATCAGCAAC
TTCACAATTATATGGCCAAAGTTTTACCAGATGATTTCAAGATCATCAAA
TCTAAAGAGGCTTCGCCTCTGGGACGTGATGTTCGACGACGAGGATGAGG
TTGTGGATATGGAAACAATTGCAACTTGCTTTCCTTACCTCAGCCATTTA
TCTCTGAGTTATGATGTGAGATATGGAGTTCTTCACTATGGCTTACAAGG
CTCTTCCGATCTAGAGAATGTTGTTGTGTTGGAGCTTGGTTGGACTGTGA
TCAATGATCTTTTCTCCCATTGGGTTGAGGGGCTGCTTAAACGCTGTCCC
AATCTCAAGAAATTGGTGATTCATGGAGTTGTTTCTGAGGCAAAGTCTCA
TGAAGAATGCCAGATGTTAGCCAGTTTCACCACAGCAATGGTTGAGATGA
TGAGGAGATACATACATGTAGATCCACATTTTAAGTATGAATAGGATTTT
TGTTATATACCTTGCTATAGCTCATGCTTTCTATTAAGTCTAATTGTGTA
GGCACATTTGCAGGTAACTCATTCAATTCAAAAAGTTTATCCTCAACTTT
TAACTTGTTGTTTGGAATCTTCTGAAATCTGGGTGACTCACCAACAAAGA
TAGCTTCACGATACACATTCATAACTTCGACCACTTCTTAGTAGACAAAA
ATGGCCACGAACTAATCTGCAAATTTTACACTTTCATTTCTGTTCTGGGA
ATTCTGATCTTATAATTAAGACTGTAAAAGTAAATCATGAAGGCATTGTA
ACAGATTCAAGTTTTTAGGTAAGAGTGTTGTTATTGTAGCTGGCCTTCAA
TATCGTTGAAAGTATTTTTCTTAAGAGTTTCATATTCTTTTGTTTCTCTT
GTATTTAGATCTATTTTCTTAGCAGTTTCATA

Coding sequence (CDS) from alignment at Vu11:33417345..33419776+

>Vigun11g127100.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g127100.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g127100.1; organism=Vigna unguiculata; type=CDS; length=1260bp; location=Sequence derived from: Vu11:33417345..33419776+ (Vigna unguiculata
ATGGACCAGCTTCCTGTTGAAGTGATTGGGAACATTCTGTCTCACTTGAG
GGCTGCACGAGATGTGGTGATAGCCTCTGCAACATGCAGGAAATGGCGAC
AAGCGTGCTGCAAACACCTTCATACCCTTTCATTCAGCTCCAAAGATTGG
CCCATTTATCGAGATTTGACGACTACCCGTCTCGAGATTTTGATCACACA
AACCATTTTTCAGACCTCAGGGTTGCAGGCTCTCTCCATTCTGATGGAAG
ATGTGGATGAATTCTCGGCTTCAACGGTTACTGCTTGGCTCTTGTACACC
AGGGAAACTTTGAGGCAATTGCATTATAATGTCAAGACTATGCCTAATGT
TAACATTCTTGAAATATGTGGCAGGCACAAGCTGGAAATTTTAGATCTTG
CTCATAATTCTATTGTGGGGGTTGAGCCTAATTATCAGCGATTCCCTTGC
TTGAAGTCTCTTTCTCTGAGTTATGTCAGTATATCTGCATTGGATCTGAA
TCTTCTGGTATATGCATGTCCGAAGATTGAAGTTTTGGAGCTTGTGAATC
CTGAGATTGCAATGTCTGATGCACAGGTGACTATTGAATTGAGTAGCTCA
ACGCTGAAGAGGGTGTATGTAGAAGCTATCAGTTTGGACAAGTTTATATT
GGAGGCTGATGGGCTTGAGACCTTGCACTTGAAAGATTGTGCACTTGAGT
TCTTTGAACTCATTGGCAAGGGGGCCTTGAAGCATTTCAAGATTGATGAT
GTTAGTGTTATACATCTTGATATTGGCGAGACAGTTGAGGATCTTGAGAC
TGTGGATATCAGCAACTTCACAATTATATGGCCAAAGTTTTACCAGATGA
TTTCAAGATCATCAAATCTAAAGAGGCTTCGCCTCTGGGACGTGATGTTC
GACGACGAGGATGAGGTTGTGGATATGGAAACAATTGCAACTTGCTTTCC
TTACCTCAGCCATTTATCTCTGAGTTATGATGTGAGATATGGAGTTCTTC
ACTATGGCTTACAAGGCTCTTCCGATCTAGAGAATGTTGTTGTGTTGGAG
CTTGGTTGGACTGTGATCAATGATCTTTTCTCCCATTGGGTTGAGGGGCT
GCTTAAACGCTGTCCCAATCTCAAGAAATTGGTGATTCATGGAGTTGTTT
CTGAGGCAAAGTCTCATGAAGAATGCCAGATGTTAGCCAGTTTCACCACA
GCAATGGTTGAGATGATGAGGAGATACATACATGTAGATCCACATTTTAA
GTATGAATAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom
IPR032675	LRR_dom_sf
IPR036047	F-box-like_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Search form

Vigun11g127100.1