Transcript Overview
Name Vigun11g127100.1 Unique Name Vigun11g127100.1_Vu_IT97K-499-35_v1.1 Type mRNA Organism Vigna unguiculata (cowpea) Sequence length 2047
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Vigun11g127100.1_Vu_IT97K-499-35_v1.1 Vigun11g127100.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata polypeptide Vigun11g127100.1 Vigun11g127100.1_Vu_IT97K-499-35_v1.1-protein Vigna unguiculata polypeptide
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun11g127100.1.v1.1.five_prime_UTR.1 Vigun11g127100.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata five_prime_UTR Vigun11g127100.1.v1.1.five_prime_UTR.2 Vigun11g127100.1.v1.1.five_prime_UTR.2_Vu_IT97K-499-35_v1.1 Vigna unguiculata five_prime_UTR Vigun11g127100.1.v1.1.five_prime_UTR.3 Vigun11g127100.1.v1.1.five_prime_UTR.3_Vu_IT97K-499-35_v1.1 Vigna unguiculata five_prime_UTR
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun11g127100.1.v1.1.CDS.1 Vigun11g127100.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata CDS
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Vigun11g127100.1.v1.1.three_prime_UTR.1 Vigun11g127100.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 Vigna unguiculata three_prime_UTR
Homology
BLAST of Vigun11g127100.1 vs. DB:Swiss
Match:
FBL34_ARATH (F-box/LRR-repeat protein At1g67190 OS=Arabidopsis thaliana OX=3702 GN=At1g67190 PE=2 SV=1)
HSP 1 Score: 627.091 bits (1616), Expect = 0.000e+0
Identity = 311/419 (74.22%), Postives = 363/419 (86.63%), Query Frame = 1
Query: 1 MDQLPVEVIGNILSHLRAARDVVIASATCRKWRQACCKHLHTLSFSSKDWPIYRDLTTTRLEILITQTIFQTSGLQALSILMEDVDEFSASTVTAWLLYTRETLRQLHYNVKTMPNVNILEICGRHKLEILDLAHNSIVGVEPNYQRFPCLKSLSLSYVSISALDLNLLVYACPKIEVLELVNPEIAMSDAQVTIELSSSTLKRVYVEAISLDKFILEADGLETLHLKDCALEFFELIGKGALKHFKIDDVSVIHLDIGETVEDLETVDISNFTIIWPKFYQMISRSSNLKRLRLWXXXXXXXXXXXXXXTIATCFPYLSHLSLSYDVRYGVLHYGLQGSSDLENVVVLELGWTVINDLFSHWVEGLLKRCPNLKKLVIHGVVSEAKSHEECQMLASFTTAMVEMMRRYIHVDPHFKYE 1257
MD LPVEVIGNILS L ARDVVIASATCRKWR+AC KHL TLSF+S DWP YRDLTT RLEILITQTIFQT GLQ LSI+M+D ++FSA+TV AWL+YTR+TLR+L YNV+T PNVNILEICGR KLE L LAHNSI GVEP++QRFPCLKSLSLSYVSISALDLNLL+ ACP IE LELV+ EIAMSDAQVTIELSS TLK VY + ISLDKFILEAD +E LH+KDC LE FELIG G LKHFK+DDVSVIHLDI ET E LE VD+++FT++WPKFYQMISRS LK+LRLWDV+FDD+DE++D+E+IA F +L+HLSLSYD++ G HY LQG++ LENV VLELGWTVIND+FS WVE LL+RCPNLKKL+I+GVVSE K+ +CQ+LA+FT ++V++MR+YIHV+ F+YE
Sbjct: 1 MDYLPVEVIGNILSRLGGARDVVIASATCRKWREACRKHLQTLSFNSADWPFYRDLTTNRLEILITQTIFQTMGLQGLSIMMDDANKFSAATVIAWLMYTRDTLRRLSYNVRTTPNVNILEICGRQKLEALVLAHNSITGVEPSFQRFPCLKSLSLSYVSISALDLNLLLSACPMIESLELVSLEIAMSDAQVTIELSSPTLKSVYFDGISLDKFILEADSIEFLHMKDCVLELFELIGNGTLKHFKLDDVSVIHLDIMETSESLEVVDVNHFTMVWPKFYQMISRSQKLKKLRLWDVVFDDDDEIIDVESIAAGFSHLTHLSLSYDLKDGAAHYSLQGTTQLENVTVLELGWTVINDVFSIWVEELLRRCPNLKKLIIYGVVSETKTQGDCQILATFTWSIVQLMRKYIHVEVQFEYE 419
BLAST of Vigun11g127100.1 vs. DB:Swiss
Match:
FB2_ARATH (F-box protein At1g10780 OS=Arabidopsis thaliana OX=3702 GN=At1g10780 PE=2 SV=1)
HSP 1 Score: 55.0694 bits (131), Expect = 5.667e-7
Identity = 70/314 (22.29%), Postives = 138/314 (43.95%), Query Frame = 1
Query: 1 MDQLPVEVIGNILSHLRAARDVVIASATCRKWRQAC----CKHLHTLSFSSKDWPIYRDLTTTRLEILITQTIFQTSGLQALSILMEDVDEFSASTVTAWLLYTRETLRQLHYNVKTMPNVNILEICGRHKLEILDLAHN----SIVGV----EPNYQRFPCLKSLSLSYVSISALDLNLLVYACPKIEVLELVNPEIAMSDAQVTIELSSSTLKRVYVEAISLDKF-------ILEADGLETLHLKDCALEFFELIGKGALKHFKIDDVS--VIHLDIGETVEDLETVDISNFTIIWPKFYQMISRSSNLKRL 879
MD LP ++ ILS+L +ARDV + ++W+++ H SF S + T + ++ + I + L+ L + F++S + +W+++ +LR L + + + ++ + G KL+ + +A N + GV P + FP L+SL + + L+ + ACP + L L+ E S ++I+L Y+E LD + +L + L +L ++ C+ + + LK+ I V+ V +D + LE + I W ++ ++ ++K L
Sbjct: 1 MDSLPDAILQYILSYLTSARDVAACNCVSKRWKESTDSVKSVVFHRNSFESI-------METDDSDSIVRKMISSSRRLEELVV----YSPFTSSGLASWMMHVSSSLRLLELRMDNLASEEVV-VEGPLKLDCIGVAKNLEILKLWGVLMMSPPKWDMFPNLRSLEIVGAKMDDSSLSHALRACPNLSNLLLLACEGVKS---ISIDLP-------YLEHCKLDFYGQGNTLLVLTSQRLVSLDVQGCS--WIRVPETKFLKNLSISSVTGRVYMVDFN-NLSSLEALSIRGVQWCWDAICMILQQARDVKHL 289
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
200 400 600 800 1000 1200 1400 1600 1800 2000 Expect = 2.2E-4 / Score = 30.5 Expect = 2.2E-7 / Score = 30.6 Expect = 7.5E-7 / Score = 31.0 Score = Expect = 4.7E-9 / Score = 37.6 Expect = 1.0E-7 / Score = 33.3 Score = Sequence SM00256 PF12937 G3DSA:1.20.1280.50 SSF52047 G3DSA:3.80.10.10 G3DSA:3.80.10.10 SSF81383
Sequences
The
following sequences are available for this feature:
mRNA sequence
>Vigun11g127100.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g127100.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g127100.1; organism=Vigna unguiculata; type=mRNA; length=2047bp back to top protein sequence of Vigun11g127100.1_Vu_IT97K-499-35_v1.1
>Vigun11g127100.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g127100.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g127100.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=420bp back to top mRNA from alignment at Vu11:33417345..33419776+
Legend: five_prime_UTR polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun11g127100.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g127100.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g127100.1; organism=Vigna unguiculata; type=mRNA; length=2432bp; location=Sequence derived from: Vu11:33417345..33419776+ (Vigna unguiculataCAATAGAGATTAACACAAATTTTCAGACCAGAACAATTGTAGTATGTGTA
ACTGAAACGCGTAGGAATAAAATCTTGGGAAATCCTAAATCAAACTCAAA
CGAACCAACTTTGGTTTGGTTTGTTTGGTTTCAGACTATGAGATTTCACG
ACTCGTTCTCTGGTCCGATCGCTCTCTTTTTCTCTAACCCAATAGCAATC
AACAATAATCCTATTTCGTAATTCATTATTTTACAG GTGAACAACCATTT
TCTCTATCCTATACCCACTTTTTTCTGTTCTTTTACAATCAATTATTGTG
ATTACTACTGTTGTTGTTATTGTTGTTGTTGACGATTATGGTTTATTTAA
TTTAAATTCTGATCCTTAATTCTATTCCCCGAATCCCATTTGACCTGCTT
GATTAAATCTTAAATCTTGATTACTTCCCCTGATTTCGTGATTTCTGTGC
AAACTGATCCAGCGAGAAGAGAAATCGACGAGAGATGTTGAGCATTTTGC
ATCTGATGAAATGCATTGGAGTGATTTCTGAG GTTTCTTCCGAAATTGCT
GTTGAATTGAATTGAATTGAATTGAAGGATTTTAAAACAAGTTTTGTTTT
GTTGGTTTTTGTTTATGTTGGTTTTGTTTTTTTATTGTGGTGTTGGTTGG
TTCTTGAGAAAACAATACATAAGACAAAGGTTGTTTGATAGATATAGCGT
TGTGAGGGGTTTCCAAGCTGGGAATTGCAGCATC ATGGACCAGCTTCCTG
TTGAAGTGATTGGGAACATTCTGTCTCACTTGAGGGCTGCACGAGATGTG
GTGATAGCCTCTGCAACATGCAGGAAATGGCGACAAGCGTGCTGCAAACA
CCTTCATACCCTTTCATTCAGCTCCAAAGATTGGCCCATTTATCGAGATT
TGACGACTACCCGTCTCGAGATTTTGATCACACAAACCATTTTTCAGACC
TCAGGGTTGCAGGCTCTCTCCATTCTGATGGAAGATGTGGATGAATTCTC
GGCTTCAACGGTTACTGCTTGGCTCTTGTACACCAGGGAAACTTTGAGGC
AATTGCATTATAATGTCAAGACTATGCCTAATGTTAACATTCTTGAAATA
TGTGGCAGGCACAAGCTGGAAATTTTAGATCTTGCTCATAATTCTATTGT
GGGGGTTGAGCCTAATTATCAGCGATTCCCTTGCTTGAAGTCTCTTTCTC
TGAGTTATGTCAGTATATCTGCATTGGATCTGAATCTTCTGGTATATGCA
TGTCCGAAGATTGAAGTTTTGGAGCTTGTGAATCCTGAGATTGCAATGTC
TGATGCACAGGTGACTATTGAATTGAGTAGCTCAACGCTGAAGAGGGTGT
ATGTAGAAGCTATCAGTTTGGACAAGTTTATATTGGAGGCTGATGGGCTT
GAGACCTTGCACTTGAAAGATTGTGCACTTGAGTTCTTTGAACTCATTGG
CAAGGGGGCCTTGAAGCATTTCAAGATTGATGATGTTAGTGTTATACATC
TTGATATTGGCGAGACAGTTGAGGATCTTGAGACTGTGGATATCAGCAAC
TTCACAATTATATGGCCAAAGTTTTACCAGATGATTTCAAGATCATCAAA
TCTAAAGAGGCTTCGCCTCTGGGACGTGATGTTCGACGACGAGGATGAGG
TTGTGGATATGGAAACAATTGCAACTTGCTTTCCTTACCTCAGCCATTTA
TCTCTGAGTTATGATGTGAGATATGGAGTTCTTCACTATGGCTTACAAGG
CTCTTCCGATCTAGAGAATGTTGTTGTGTTGGAGCTTGGTTGGACTGTGA
TCAATGATCTTTTCTCCCATTGGGTTGAGGGGCTGCTTAAACGCTGTCCC
AATCTCAAGAAATTGGTGATTCATGGAGTTGTTTCTGAGGCAAAGTCTCA
TGAAGAATGCCAGATGTTAGCCAGTTTCACCACAGCAATGGTTGAGATGA
TGAGGAGATACATACATGTAGATCCACATTTTAAGTATGAATAG GATTTT
TGTTATATACCTTGCTATAGCTCATGCTTTCTATTAAGTCTAATTGTGTA
GGCACATTTGCAGGTAACTCATTCAATTCAAAAAGTTTATCCTCAACTTT
TAACTTGTTGTTTGGAATCTTCTGAAATCTGGGTGACTCACCAACAAAGA
TAGCTTCACGATACACATTCATAACTTCGACCACTTCTTAGTAGACAAAA
ATGGCCACGAACTAATCTGCAAATTTTACACTTTCATTTCTGTTCTGGGA
ATTCTGATCTTATAATTAAGACTGTAAAAGTAAATCATGAAGGCATTGTA
ACAGATTCAAGTTTTTAGGTAAGAGTGTTGTTATTGTAGCTGGCCTTCAA
TATCGTTGAAAGTATTTTTCTTAAGAGTTTCATATTCTTTTGTTTCTCTT
GTATTTAGATCTATTTTCTTAGCAGTTTCATA back to top Coding sequence (CDS) from alignment at Vu11:33417345..33419776+
>Vigun11g127100.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g127100.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g127100.1; organism=Vigna unguiculata; type=CDS; length=1260bp; location=Sequence derived from: Vu11:33417345..33419776+ (Vigna unguiculata back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: Molecular Function
Term Definition
GO:0005515 protein binding
