Phvul.002G046400.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Phvul.002G046400.1 vs. DB:Swiss
Match: AT21A_ARATH (Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 5.222e-51 Identity = 129/359 (35.93%), Postives = 181/359 (50.42%), Query Frame = 1 Query: 58 CRTISCGKIKIH--FPFGLKQTPIEATISGRCSYPRFQLSCDNRNRTILSLPGSGDLVVKSINYESQTLTVNDPEGCLPKRFLQNLSLSLHPPFTFEATVYDLTFLRCPSNMTHSVESPPISCLDXXXXXXVTFSWWPLNGTLPWSEECEVISSAFVPIPNP--DTTSFFMPDLN-KDVVLKWNEPACGDCAGRGQVCGFTSHTKTLQVGCFFYAPNQNQGLSRSAKYGLTIGVGIPGLLCLTGLCCFM----CSKFDVYAHGNRARPTRELPSSITTLPRSSPTVGLIGPEIEKLPKTLIGESGRLPNWNDN-TCPICLSEYEPKETLRTIPACNHYFHAHCIDEWLKMNATCPLCRN 1104 C + SCG+ +H FPF L E C + F L C +T L LP SG +V+ I+Y SQ + + DPE CL ++ L +S P Y TFL CP+ + S I CL ++++S + + L ++ S C+++ + VP+ S F D+N KD+ LKW+ P+C DC CGF S+T +LQV CF P +N G + + I + I G L + C + +F N A + P+ + T GL IE KT +GES RLP ND+ CPICLSEY KET+R IP C+H FH+ CID WLK++ +CPLCRN Sbjct: 26 CSSSSCGRDDVHVRFPFWLLSKQPEL-----CGHAGFNLQCTASPKTALKLPNSGTFLVREIDYLSQQIRLYDPENCLARKLL-TFDISRSPFSALYLVSY--TFLSCPNEVAKSSRFDSIPCLGNSTTSFLATTSLDLAKSMLPS--CQIVKTLDVPVSRRVIAKKSRFSTDVNDKDLWLKWDSPSCSDCERDFLRCGFRSNT-SLQVKCF---PFENSGYNTEPQVLKIILLSIIGPLTIFATCIAVGVCTSERFASLIQRNVAIAALQ-PNEVIV------TTGLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCFHSECIDVWLKIHGSCPLCRN 363
BLAST of Phvul.002G046400.1 vs. DB:Swiss
Match: AT21B_ARATH (Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana OX=3702 GN=ATL21B PE=3 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 4.312e-50 Identity = 132/360 (36.67%), Postives = 179/360 (49.72%), Query Frame = 1 Query: 46 GESTCRTISCG--KIKIHFPFGLKQTPIEATISGRCSYPRFQLSCDNRNRTILSLPGSGDLVVKSINYESQTLTVNDPEGCLPKRFLQ-NLSLSLHPPFTFEATVYDLTFLRCPSNMTHSVESPPISCLDXXXXXXVTFSWWPLNGTLPWSEECEVISSAFVPIPNPDTTSFFMPDLNKDVVLKWNEPACGDCAGRGQVCGFTSHTKTLQVGCFFYAPNQNQGLSRSAKYGLTIGVGIPGLLCLTGLCCFMCSKFDVYAHGNRARPTRELPSSITTL---PRS-SPTVGLIGPEIEKLPKTLIGESGRLPNWNDNTCPICLSEYEPKETLRTIPACNHYFHAHCIDEWLKMNATCPLCRN 1104 S R CG ++ I FPF C +P F L C N N T+L LP SG V+ I+Y Q + +NDPE CL KR L N+S S P F+ T+Y TFL CP+ + P I CL +++SS S + L ++ S C+++ +VP +P + F LN+ ++L+WN P C C CGF + +V CF ++ LSR A + I + I G + L C + H R +P++ T+ PR T GL IEK +GES R P N CPICLSEY KET+R IP C+H FHA CID WLK++ +CPLCRN Sbjct: 30 SSSNSRPHRCGPLEVPIRFPF--------------CDHPLFNLLCTNLNNTVLQLPMSGTFFVQYIDYRKQQIYINDPENCLAKRLLTFNISGSPFSP-RFD-TLY--TFLTCPNELVLPSWYPSIPCLSNSTSSFFATSNFALAESMLPS--CQIVKRIYVPADSPFAETRFSSYLNQSLLLEWNSPNCRGCEIDYLRCGFKNKASP-EVKCF--GAKKSGHLSR-AVVAVLICLSIIGAVILFVTC------IAIRIHNTPRRRHWAVPAAAATVMQQPREVMATRGLDQSTIEKYKTMELGESRRPPGTNGIVCPICLSEYVSKETVRFIPECDHCFHAKCIDVWLKIHGSCPLCRN 359
BLAST of Phvul.002G046400.1 vs. DB:Swiss
Match: ATL22_ARATH (RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2) HSP 1 Score: 164.081 bits (414), Expect = 1.405e-45 Identity = 131/360 (36.39%), Postives = 182/360 (50.56%), Query Frame = 1 Query: 58 CRTISCGK--IKIHFPFGLKQTPIEATISGRCSYPRFQLSCDNRNRTILSLPGSGDLVVKSINYESQTLTVNDPEGCLPKRFLQNLSLSLHPPFTFEATVYDLTFLRCPSNMTHSVESPPISCLDXXXXXXVTFSWWPLNGTLPWSEECEVISSAFVPIPNPDTTSFF-MPD--LNKDVVLKWNEPACGDCAGR-GQVCGFTSHTKTLQVGCFFYAPNQNQGLSRSAKYGLTIG-VGIPGLLCLTGLCC--FMCSKFDVYAHGNRARPTRELPSSITTLPRSS-PTVGLIGPEIEKLPKTLIGESGRLPNW-NDNTCPICLSEYEPKETLRTIPACNHYFHAHCIDEWLKMNATCPLCRN 1104 C + SC + + FPF L E+ C Y F L C + T L LP S +VK I+YE+Q + +NDPE CL +R L N S PF+F + + TFL CP + I CL + +SS + L G++P S C + +P+P ++ PD ++D+ LKW+ P C DC R CGF ++T + QV CF + N GL + L I + + G L C MCS V + +A R L S+T+ P + +GL IE K +GES RLP ND CPICLSEY KET+R +P C H FH CID WLK++++CP+CR+ Sbjct: 29 CYSFSCSQESVVARFPFSLFSYQPES-----CGYSGFNLICKDDANTTLKLPKSEPFLVKEIDYETQRIRLNDPENCLARRLL-NFDPS-GSPFSFLRS-RNYTFLICPKEANITASFRAIDCLGNTTSSFFVVQFENL-GSMPSS--CHIF--KILPLPFSWFVAYTTYPDGQNSRDMWLKWDSPDCRDCERRTNSRCGFKNNT-SHQVECF---SSVNPGLHNTGLQVLKIMCLSLVGPLTALTFCVGLVMCSSERVSSQIQQAVVAR-LSGSVTSQPSNEVARIGLDESTIESYKKVELGESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTECIDAWLKLHSSCPVCRS 370
BLAST of Phvul.002G046400.1 vs. DB:Swiss
Match: AT21C_ARATH (Putative RING-H2 finger protein ATL21C OS=Arabidopsis thaliana OX=3702 GN=ATL21C PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 7.704e-41 Identity = 112/354 (31.64%), Postives = 167/354 (47.18%), Query Frame = 1 Query: 61 RTISCG--KIKIHFPFGLKQTPIEATISGRCSYPRFQLSCDNRNRTILSLPGSGDLVVKSINYESQTLTVNDPEGCLPKRFLQ-NLSLSLHPPFTFEATVYDLTFLRCPSNMTHSVESPPISCLDXXXXXXVTFSWWPLNGTLPWSEECEVISSAFVPIPNPDTTSFFMPDLN-KDVVLKWNEPAC-GDCAGRGQVCGFTSHTKTLQVGCFFYAPNQNQGLSRSAKYG-LTIGVGIPGLLCLTGLCCFMCSKFDVYAHGNRARPTRELPSSITTLPRSSPTVGLIGPEIEKLPKTLIGESGRLPNWNDNTCPICLSEYEPKETLRTIPACNHYFHAHCIDEWLKMNATCPLCRN 1104 R + CG ++ I FPF C++ RF L C + N+T+L LP SG +V+ I+Y Q + +NDP CL KR L N+S S PF+ + TFL CP+ + P I CL +++SS S + L ++ S C+++ VP +P + F DLN + ++L+W P C C G + G ++ F ++ ++ + G L + + + + C +D + + + R GL IE K +GES RL N CPICLSEY KET+R IP C+H FH CID WLK++ +CPLCRN Sbjct: 35 RPLRCGPLEVPIRFPF--------------CNHARFNLHCTDLNKTVLELPMSGTFLVRDIDYRRQKIYINDP-NCLAKRLLTFNISGS---PFSPHFDIL-YTFLSCPNEVVLPSWYPSIPCLSNSTSSFFATSNYSLAQSMLPS--CQIVKRLHVPATSPFGETRFSSDLNNQSLLLEWALPDCRAKCLGATKKTGTIYNSNIFSCSFSFLYDSRELFINGNLSSGVLVLVISLSAVTVFVFPTCIAIRLYDSERFDSAIAAATVMQQPREVMARR----GLDQSTIETFKKMELGESRRLSGTNGIVCPICLSEYASKETVRFIPECDHCFHVECIDVWLKIHGSCPLCRN 363
BLAST of Phvul.002G046400.1 vs. DB:Swiss
Match: ATL20_ARATH (RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2) HSP 1 Score: 145.976 bits (367), Expect = 1.460e-39 Identity = 106/309 (34.30%), Postives = 153/309 (49.51%), Query Frame = 1 Query: 211 SGDLVVKSINYESQTLTVNDPEGCLPKRFLQ-NLSLSLHPPFTFEATVYDLTFLRCPSNMTHSVES-PPISCLDXXXXXXVTFSWWPLNGTLPWSEECEVISSAFVPIPN------PDTTSFFMPDLNKDVVLKWNEPACGDCAGRGQVCGFTSHTKTLQVGCFFYAPNQNQGLSRSAKYGLTIGVGIPGLLCLTGLCCFMCSKFDVYAHGNRA---RPTRELPSSITTLPRSSPTVGLIGPEIEKLPKTLIGESGRLPNWNDNTCPICLSEYEPKETLRTIPACNHYFHAHCIDEWLKMNATCPLCRN 1104 SG +V INY+ Q ++++DPE C+ KR L N S S PF++ + Y TFL CP+ + V S I CL +++SS S + LP S C+++ +VP+ + F +V+L+W+ P C C CGF + +L+V P++ + R L I GI C+ + + +F N A R T + P + T GL IE K +GES RLP N CPICLSEY KET+R +P C+H FH CIDEWLK++++CP+CRN Sbjct: 2 SGTFLVDEINYQKQQISISDPENCMVKRLLTFNTSGS---PFSYGFSFY-YTFLTCPNEVVIPVWSLMSIPCLSNSTSSFFATSNLTFSKLLPPS--CQIVKGLYVPVDVIYKDVITEEKGFSTVPWLGNVLLEWSSPNCRGCEKESLRCGF-KNKASLEVKYLADPPDETKSRLRPLIITLCIIGGITAT-CIAAIRIYNSERFVNQRRQNAAITARNTTQQPRGVVV------TTGLDQSTIESYKKVELGESRRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVCRN 296
BLAST of Phvul.002G046400.1 vs. DB:Swiss
Match: ATL69_ARATH (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.005e-23 Identity = 52/128 (40.62%), Postives = 72/128 (56.25%), Query Frame = 1 Query: 724 YGLTIGVGIPGLLCLTGLCCFMCSKFDVYAHGNR-ARPTRELPSSITTLPRSSPTVGLIGPEIEKLPKTLIGESGRLPNWNDNTCPICLSEYEPKETLRTIPACNHYFHAHCIDEWLKMNATCPLCRN 1104 YG+ I V I L+ L ++C + + +LPS P + +GL P IE P+ ++G+S RLP N+ C ICL +YE +E +R IP CNH FH C+DEWL+ +ATCPLCRN Sbjct: 15 YGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDLPS-----PAAEVKLGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDEWLRTSATCPLCRN 137
BLAST of Phvul.002G046400.1 vs. DB:Swiss
Match: NIP2_ARATH (NEP1-interacting protein 2 OS=Arabidopsis thaliana OX=3702 GN=NIP2 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.872e-14 Identity = 32/83 (38.55%), Postives = 53/83 (63.86%), Query Frame = 1 Query: 859 TTLPRSSPTVGLIGPEIEKLPK-TLIGESGRLPNWNDNTCPICLSEYEPKETLRTIPACNHYFHAHCIDEWLKMNATCPLCRN 1104 T+L + + GL G +EK+PK T+ G + + N ++C +CL +++ ET+R++P C+H FH CID WL + +CP+CR Sbjct: 157 TSLFDTGGSKGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMCRR 239
BLAST of Phvul.002G046400.1 vs. DB:Swiss
Match: ATL67_ARATH (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 6.357e-14 Identity = 36/80 (45.00%), Postives = 42/80 (52.50%), Query Frame = 1 Query: 883 TVGLIGPEIEKLPK------TLIGESGRLPNWNDNTCPICLSEYEPKETLRTIPACNHYFHAHCIDEWLKMNATCPLCRN 1104 VGL I PK T S D TC ICL EY+ E LR +P C HYFH C+D WLK+N +CP+CRN Sbjct: 102 VVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRN 181
BLAST of Phvul.002G046400.1 vs. DB:Swiss
Match: ATL68_ARATH (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.628e-13 Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 1 Query: 961 NDNTCPICLSEYEPKETLRTIPACNHYFHAHCIDEWLKMNATCPLCRN 1104 + TC ICL EY +E LR +P C HYFH +C+D WLK+N +CP+CRN Sbjct: 132 RETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRN 179
BLAST of Phvul.002G046400.1 vs. DB:Swiss
Match: NIP1_ARATH (NEP1-interacting protein 1 OS=Arabidopsis thaliana OX=3702 GN=NIP1 PE=1 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 5.507e-13 Identity = 29/84 (34.52%), Postives = 54/84 (64.29%), Query Frame = 1 Query: 856 ITTLPRSSPTVGLIGPEIEKLPKTLI-GESGRLPNWNDNTCPICLSEYEPKETLRTIPACNHYFHAHCIDEWLKMNATCPLCRN 1104 ++++ + + GL G ++K+PK I G++ + N ++C +CL +++ ET+R++P C+H FH CID WL + +CP+CR Sbjct: 151 LSSIFDTGGSKGLTGDLVDKIPKIKITGKNNLDASGNKDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLFRHGSCPMCRR 234 The following BLAST results are available for this feature:
BLAST of Phvul.002G046400.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.002G046400.1_Pv_G19833_v2.1 >Phvul.002G046400.1_Pv_G19833_v2.1 ID=Phvul.002G046400.1_Pv_G19833_v2.1; Name=Phvul.002G046400.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=386bpback to top mRNA from alignment at Chr02:4286512..4289747- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.002G046400.1_Pv_G19833_v2.1 ID=Phvul.002G046400.1_Pv_G19833_v2.1; Name=Phvul.002G046400.1; organism=Phaseolus vulgaris; type=mRNA; length=3236bp; location=Sequence derived from: Chr02:4286512..4289747- (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr02:4286512..4289747- >Phvul.002G046400.1_Pv_G19833_v2.1 ID=Phvul.002G046400.1_Pv_G19833_v2.1; Name=Phvul.002G046400.1; organism=Phaseolus vulgaris; type=CDS; length=1158bp; location=Sequence derived from: Chr02:4286512..4289747- (Phaseolus vulgarisback to top |