Phvul.002G046400.1

Transcript Overview
NamePhvul.002G046400.1
Unique NamePhvul.002G046400.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr02supercontigChr02:4286512..4289747 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvR167Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL302Pisum sativum Cameor genome v1aPisum sativum
pspvL613Pisum sativum Cameor genome v1aPisum sativum
pvvuR210Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR274Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0405Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipvL0406Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL366Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
caipvL1031Cicer arietinum ICC 4958 genome v2Cicer arietinum
capvL333Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crpvL930Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL780Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0071Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0711Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0534Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1104Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL422Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR218Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR249Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR222Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR268Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR218Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR263Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR197Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR185Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR267Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvuaR245Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR347Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL298Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL751Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL385Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL718Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL310Cicer arietinum
carpvL774Cicer arietinum
ccapvL267Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL578Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR266Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR271Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR243Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR251Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR266Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR260Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvasR342Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR338Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR197Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR249Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR192Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR256Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr02.1000264Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.002G046400Phvul.002G046400_Pv_G19833_v2.1Phaseolus vulgarisgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.002G046400.1.v2.1.CDS.2Phvul.002G046400.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.002G046400.1.v2.1.CDS.1Phvul.002G046400.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.002G046400.1.v2.1.three_prime_UTR.1Phvul.002G046400.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.002G046400.1.v2.1.five_prime_UTR.1Phvul.002G046400.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.002G046400.1Phvul.002G046400.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.002G046400.1_Pv_G19833_v2.1Phvul.002G046400.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


Homology
BLAST of Phvul.002G046400.1 vs. DB:Swiss
Match: AT21A_ARATH (Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.222e-51
Identity = 129/359 (35.93%), Postives = 181/359 (50.42%), Query Frame = 1
Query:   58 CRTISCGKIKIH--FPFGLKQTPIEATISGRCSYPRFQLSCDNRNRTILSLPGSGDLVVKSINYESQTLTVNDPEGCLPKRFLQNLSLSLHPPFTFEATVYDLTFLRCPSNMTHSVESPPISCLDXXXXXXVTFSWWPLNGTLPWSEECEVISSAFVPIPNP--DTTSFFMPDLN-KDVVLKWNEPACGDCAGRGQVCGFTSHTKTLQVGCFFYAPNQNQGLSRSAKYGLTIGVGIPGLLCLTGLCCFM----CSKFDVYAHGNRARPTRELPSSITTLPRSSPTVGLIGPEIEKLPKTLIGESGRLPNWNDN-TCPICLSEYEPKETLRTIPACNHYFHAHCIDEWLKMNATCPLCRN 1104
            C + SCG+  +H  FPF L     E      C +  F L C    +T L LP SG  +V+ I+Y SQ + + DPE CL ++ L    +S  P        Y  TFL CP+ +  S     I CL ++++S +  +   L  ++  S  C+++ +  VP+        S F  D+N KD+ LKW+ P+C DC      CGF S+T +LQV CF   P +N G +   +    I + I G L +   C  +      +F      N A    + P+ +        T GL    IE   KT +GES RLP  ND+  CPICLSEY  KET+R IP C+H FH+ CID WLK++ +CPLCRN
Sbjct:   26 CSSSSCGRDDVHVRFPFWLLSKQPEL-----CGHAGFNLQCTASPKTALKLPNSGTFLVREIDYLSQQIRLYDPENCLARKLL-TFDISRSPFSALYLVSY--TFLSCPNEVAKSSRFDSIPCLGNSTTSFLATTSLDLAKSMLPS--CQIVKTLDVPVSRRVIAKKSRFSTDVNDKDLWLKWDSPSCSDCERDFLRCGFRSNT-SLQVKCF---PFENSGYNTEPQVLKIILLSIIGPLTIFATCIAVGVCTSERFASLIQRNVAIAALQ-PNEVIV------TTGLDESIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCFHSECIDVWLKIHGSCPLCRN 363          
BLAST of Phvul.002G046400.1 vs. DB:Swiss
Match: AT21B_ARATH (Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana OX=3702 GN=ATL21B PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 4.312e-50
Identity = 132/360 (36.67%), Postives = 179/360 (49.72%), Query Frame = 1
Query:   46 GESTCRTISCG--KIKIHFPFGLKQTPIEATISGRCSYPRFQLSCDNRNRTILSLPGSGDLVVKSINYESQTLTVNDPEGCLPKRFLQ-NLSLSLHPPFTFEATVYDLTFLRCPSNMTHSVESPPISCLDXXXXXXVTFSWWPLNGTLPWSEECEVISSAFVPIPNPDTTSFFMPDLNKDVVLKWNEPACGDCAGRGQVCGFTSHTKTLQVGCFFYAPNQNQGLSRSAKYGLTIGVGIPGLLCLTGLCCFMCSKFDVYAHGNRARPTRELPSSITTL---PRS-SPTVGLIGPEIEKLPKTLIGESGRLPNWNDNTCPICLSEYEPKETLRTIPACNHYFHAHCIDEWLKMNATCPLCRN 1104
              S  R   CG  ++ I FPF              C +P F L C N N T+L LP SG   V+ I+Y  Q + +NDPE CL KR L  N+S S   P  F+ T+Y  TFL CP+ +      P I CL +++SS    S + L  ++  S  C+++   +VP  +P   + F   LN+ ++L+WN P C  C      CGF +     +V CF     ++  LSR A   + I + I G + L   C        +  H    R    +P++  T+   PR    T GL    IEK     +GES R P  N   CPICLSEY  KET+R IP C+H FHA CID WLK++ +CPLCRN
Sbjct:   30 SSSNSRPHRCGPLEVPIRFPF--------------CDHPLFNLLCTNLNNTVLQLPMSGTFFVQYIDYRKQQIYINDPENCLAKRLLTFNISGSPFSP-RFD-TLY--TFLTCPNELVLPSWYPSIPCLSNSTSSFFATSNFALAESMLPS--CQIVKRIYVPADSPFAETRFSSYLNQSLLLEWNSPNCRGCEIDYLRCGFKNKASP-EVKCF--GAKKSGHLSR-AVVAVLICLSIIGAVILFVTC------IAIRIHNTPRRRHWAVPAAAATVMQQPREVMATRGLDQSTIEKYKTMELGESRRPPGTNGIVCPICLSEYVSKETVRFIPECDHCFHAKCIDVWLKIHGSCPLCRN 359          
BLAST of Phvul.002G046400.1 vs. DB:Swiss
Match: ATL22_ARATH (RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 1.405e-45
Identity = 131/360 (36.39%), Postives = 182/360 (50.56%), Query Frame = 1
Query:   58 CRTISCGK--IKIHFPFGLKQTPIEATISGRCSYPRFQLSCDNRNRTILSLPGSGDLVVKSINYESQTLTVNDPEGCLPKRFLQNLSLSLHPPFTFEATVYDLTFLRCPSNMTHSVESPPISCLDXXXXXXVTFSWWPLNGTLPWSEECEVISSAFVPIPNPDTTSFF-MPD--LNKDVVLKWNEPACGDCAGR-GQVCGFTSHTKTLQVGCFFYAPNQNQGLSRSAKYGLTIG-VGIPGLLCLTGLCC--FMCSKFDVYAHGNRARPTRELPSSITTLPRSS-PTVGLIGPEIEKLPKTLIGESGRLPNW-NDNTCPICLSEYEPKETLRTIPACNHYFHAHCIDEWLKMNATCPLCRN 1104
            C + SC +  +   FPF L     E+     C Y  F L C +   T L LP S   +VK I+YE+Q + +NDPE CL +R L N   S   PF+F  +  + TFL CP     +     I CL + +SS     +  L G++P S  C +     +P+P     ++   PD   ++D+ LKW+ P C DC  R    CGF ++T + QV CF    + N GL  +    L I  + + G L     C    MCS   V +   +A   R L  S+T+ P +    +GL    IE   K  +GES RLP   ND  CPICLSEY  KET+R +P C H FH  CID WLK++++CP+CR+
Sbjct:   29 CYSFSCSQESVVARFPFSLFSYQPES-----CGYSGFNLICKDDANTTLKLPKSEPFLVKEIDYETQRIRLNDPENCLARRLL-NFDPS-GSPFSFLRS-RNYTFLICPKEANITASFRAIDCLGNTTSSFFVVQFENL-GSMPSS--CHIF--KILPLPFSWFVAYTTYPDGQNSRDMWLKWDSPDCRDCERRTNSRCGFKNNT-SHQVECF---SSVNPGLHNTGLQVLKIMCLSLVGPLTALTFCVGLVMCSSERVSSQIQQAVVAR-LSGSVTSQPSNEVARIGLDESTIESYKKVELGESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTECIDAWLKLHSSCPVCRS 370          
BLAST of Phvul.002G046400.1 vs. DB:Swiss
Match: AT21C_ARATH (Putative RING-H2 finger protein ATL21C OS=Arabidopsis thaliana OX=3702 GN=ATL21C PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.704e-41
Identity = 112/354 (31.64%), Postives = 167/354 (47.18%), Query Frame = 1
Query:   61 RTISCG--KIKIHFPFGLKQTPIEATISGRCSYPRFQLSCDNRNRTILSLPGSGDLVVKSINYESQTLTVNDPEGCLPKRFLQ-NLSLSLHPPFTFEATVYDLTFLRCPSNMTHSVESPPISCLDXXXXXXVTFSWWPLNGTLPWSEECEVISSAFVPIPNPDTTSFFMPDLN-KDVVLKWNEPAC-GDCAGRGQVCGFTSHTKTLQVGCFFYAPNQNQGLSRSAKYG-LTIGVGIPGLLCLTGLCCFMCSKFDVYAHGNRARPTRELPSSITTLPRSSPTVGLIGPEIEKLPKTLIGESGRLPNWNDNTCPICLSEYEPKETLRTIPACNHYFHAHCIDEWLKMNATCPLCRN 1104
            R + CG  ++ I FPF              C++ RF L C + N+T+L LP SG  +V+ I+Y  Q + +NDP  CL KR L  N+S S   PF+    +   TFL CP+ +      P I CL +++SS    S + L  ++  S  C+++    VP  +P   + F  DLN + ++L+W  P C   C G  +  G   ++        F   ++   ++ +   G L + + +  +       C     +D     +       +      + R     GL    IE   K  +GES RL   N   CPICLSEY  KET+R IP C+H FH  CID WLK++ +CPLCRN
Sbjct:   35 RPLRCGPLEVPIRFPF--------------CNHARFNLHCTDLNKTVLELPMSGTFLVRDIDYRRQKIYINDP-NCLAKRLLTFNISGS---PFSPHFDIL-YTFLSCPNEVVLPSWYPSIPCLSNSTSSFFATSNYSLAQSMLPS--CQIVKRLHVPATSPFGETRFSSDLNNQSLLLEWALPDCRAKCLGATKKTGTIYNSNIFSCSFSFLYDSRELFINGNLSSGVLVLVISLSAVTVFVFPTCIAIRLYDSERFDSAIAAATVMQQPREVMARR----GLDQSTIETFKKMELGESRRLSGTNGIVCPICLSEYASKETVRFIPECDHCFHVECIDVWLKIHGSCPLCRN 363          
BLAST of Phvul.002G046400.1 vs. DB:Swiss
Match: ATL20_ARATH (RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.460e-39
Identity = 106/309 (34.30%), Postives = 153/309 (49.51%), Query Frame = 1
Query:  211 SGDLVVKSINYESQTLTVNDPEGCLPKRFLQ-NLSLSLHPPFTFEATVYDLTFLRCPSNMTHSVES-PPISCLDXXXXXXVTFSWWPLNGTLPWSEECEVISSAFVPIPN------PDTTSFFMPDLNKDVVLKWNEPACGDCAGRGQVCGFTSHTKTLQVGCFFYAPNQNQGLSRSAKYGLTIGVGIPGLLCLTGLCCFMCSKFDVYAHGNRA---RPTRELPSSITTLPRSSPTVGLIGPEIEKLPKTLIGESGRLPNWNDNTCPICLSEYEPKETLRTIPACNHYFHAHCIDEWLKMNATCPLCRN 1104
            SG  +V  INY+ Q ++++DPE C+ KR L  N S S   PF++  + Y  TFL CP+ +   V S   I CL +++SS    S    +  LP S  C+++   +VP+         +   F       +V+L+W+ P C  C      CGF  +  +L+V      P++ +   R     L I  GI    C+  +  +   +F      N A   R T + P  +        T GL    IE   K  +GES RLP  N   CPICLSEY  KET+R +P C+H FH  CIDEWLK++++CP+CRN
Sbjct:    2 SGTFLVDEINYQKQQISISDPENCMVKRLLTFNTSGS---PFSYGFSFY-YTFLTCPNEVVIPVWSLMSIPCLSNSTSSFFATSNLTFSKLLPPS--CQIVKGLYVPVDVIYKDVITEEKGFSTVPWLGNVLLEWSSPNCRGCEKESLRCGF-KNKASLEVKYLADPPDETKSRLRPLIITLCIIGGITAT-CIAAIRIYNSERFVNQRRQNAAITARNTTQQPRGVVV------TTGLDQSTIESYKKVELGESRRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVCRN 296          
BLAST of Phvul.002G046400.1 vs. DB:Swiss
Match: ATL69_ARATH (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.005e-23
Identity = 52/128 (40.62%), Postives = 72/128 (56.25%), Query Frame = 1
Query:  724 YGLTIGVGIPGLLCLTGLCCFMCSKFDVYAHGNR-ARPTRELPSSITTLPRSSPTVGLIGPEIEKLPKTLIGESGRLPNWNDNTCPICLSEYEPKETLRTIPACNHYFHAHCIDEWLKMNATCPLCRN 1104
            YG+ I V I  L+    L  ++C +          +    +LPS     P +   +GL  P IE  P+ ++G+S RLP  N+  C ICL +YE +E +R IP CNH FH  C+DEWL+ +ATCPLCRN
Sbjct:   15 YGIAIAVSILVLISFIMLASYICIRSKSTGRDEATSDVVLDLPS-----PAAEVKLGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREPVRCIPECNHCFHTDCVDEWLRTSATCPLCRN 137          
BLAST of Phvul.002G046400.1 vs. DB:Swiss
Match: NIP2_ARATH (NEP1-interacting protein 2 OS=Arabidopsis thaliana OX=3702 GN=NIP2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.872e-14
Identity = 32/83 (38.55%), Postives = 53/83 (63.86%), Query Frame = 1
Query:  859 TTLPRSSPTVGLIGPEIEKLPK-TLIGESGRLPNWNDNTCPICLSEYEPKETLRTIPACNHYFHAHCIDEWLKMNATCPLCRN 1104
            T+L  +  + GL G  +EK+PK T+ G +    + N ++C +CL +++  ET+R++P C+H FH  CID WL  + +CP+CR 
Sbjct:  157 TSLFDTGGSKGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMCRR 239          
BLAST of Phvul.002G046400.1 vs. DB:Swiss
Match: ATL67_ARATH (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.357e-14
Identity = 36/80 (45.00%), Postives = 42/80 (52.50%), Query Frame = 1
Query:  883 TVGLIGPEIEKLPK------TLIGESGRLPNWNDNTCPICLSEYEPKETLRTIPACNHYFHAHCIDEWLKMNATCPLCRN 1104
             VGL    I   PK      T    S       D TC ICL EY+  E LR +P C HYFH  C+D WLK+N +CP+CRN
Sbjct:  102 VVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRN 181          
BLAST of Phvul.002G046400.1 vs. DB:Swiss
Match: ATL68_ARATH (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.628e-13
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 1
Query:  961 NDNTCPICLSEYEPKETLRTIPACNHYFHAHCIDEWLKMNATCPLCRN 1104
             + TC ICL EY  +E LR +P C HYFH +C+D WLK+N +CP+CRN
Sbjct:  132 RETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRN 179          
BLAST of Phvul.002G046400.1 vs. DB:Swiss
Match: NIP1_ARATH (NEP1-interacting protein 1 OS=Arabidopsis thaliana OX=3702 GN=NIP1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.507e-13
Identity = 29/84 (34.52%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  856 ITTLPRSSPTVGLIGPEIEKLPKTLI-GESGRLPNWNDNTCPICLSEYEPKETLRTIPACNHYFHAHCIDEWLKMNATCPLCRN 1104
            ++++  +  + GL G  ++K+PK  I G++    + N ++C +CL +++  ET+R++P C+H FH  CID WL  + +CP+CR 
Sbjct:  151 LSSIFDTGGSKGLTGDLVDKIPKIKITGKNNLDASGNKDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLFRHGSCPMCRR 234          
The following BLAST results are available for this feature:
BLAST of Phvul.002G046400.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
AT21A_ARATH5.222e-5135.93Putative RING-H2 finger protein ATL21A OS=Arabidop... [more]
AT21B_ARATH4.312e-5036.67Putative RING-H2 finger protein ATL21B OS=Arabidop... [more]
ATL22_ARATH1.405e-4536.39RING-H2 finger protein ATL22 OS=Arabidopsis thalia... [more]
AT21C_ARATH7.704e-4131.64Putative RING-H2 finger protein ATL21C OS=Arabidop... [more]
ATL20_ARATH1.460e-3934.30RING-H2 finger protein ATL20 OS=Arabidopsis thalia... [more]
ATL69_ARATH1.005e-2340.63Putative RING-H2 finger protein ATL69 OS=Arabidops... [more]
NIP2_ARATH3.872e-1438.55NEP1-interacting protein 2 OS=Arabidopsis thaliana... [more]
ATL67_ARATH6.357e-1445.00RING-H2 finger protein ATL67 OS=Arabidopsis thalia... [more]
ATL68_ARATH1.628e-1356.25RING-H2 finger protein ATL68 OS=Arabidopsis thalia... [more]
NIP1_ARATH5.507e-1334.52NEP1-interacting protein 1 OS=Arabidopsis thaliana... [more]
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 325..366
e-value: 2.0E-7
score: 40.6
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 323..367
e-value: 9.1E-14
score: 51.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 325..367
score: 12.932
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 296..372
e-value: 1.0E-20
score: 75.1
IPR025287Wall-associated receptor kinase, galacturonan-binding domainPFAMPF13947GUB_WAK_bindcoord: 19..125
e-value: 1.9E-11
score: 44.6
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 324..367
e-value: 2.07966E-17
score: 73.1049
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 319..371

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.002G046400.1_Pv_G19833_v2.1

>Phvul.002G046400.1_Pv_G19833_v2.1 ID=Phvul.002G046400.1_Pv_G19833_v2.1; Name=Phvul.002G046400.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=386bp
MLCLPLLIIFLLPLRGESTCRTISCGKIKIHFPFGLKQTPIEATISGRCS
YPRFQLSCDNRNRTILSLPGSGDLVVKSINYESQTLTVNDPEGCLPKRFL
QNLSLSLHPPFTFEATVYDLTFLRCPSNMTHSVESPPISCLDSNSSSSVT
FSWWPLNGTLPWSEECEVISSAFVPIPNPDTTSFFMPDLNKDVVLKWNEP
ACGDCAGRGQVCGFTSHTKTLQVGCFFYAPNQNQGLSRSAKYGLTIGVGI
PGLLCLTGLCCFMCSKFDVYAHGNRARPTRELPSSITTLPRSSPTVGLIG
PEIEKLPKTLIGESGRLPNWNDNTCPICLSEYEPKETLRTIPACNHYFHA
HCIDEWLKMNATCPLCRNSPDPCSTVTPSSSSSLP*
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mRNA from alignment at Chr02:4286512..4289747-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.002G046400.1_Pv_G19833_v2.1 ID=Phvul.002G046400.1_Pv_G19833_v2.1; Name=Phvul.002G046400.1; organism=Phaseolus vulgaris; type=mRNA; length=3236bp; location=Sequence derived from: Chr02:4286512..4289747- (Phaseolus vulgaris
TGACACTTTGCCAATCCTCAAAGAAGTTATTGAAAGTGATGAATTGCATT TATTTCTCTTTAGCTTCCAACACTTCCTATAATTAAACCTTTCCCTCTTC TCCTATTCACATCACACTTCTTGCTCATTCCTTGTTCCAATGTTGTGTCT GCCACTGTTGATCATCTTTCTCCTCCCTCTCAGAGGGGAATCAACGTGCC GCACAATCTCATGCGGCAAAATCAAAATTCACTTTCCGTTTGGTCTGAAA CAAACTCCGATCGAAGCTACAATTTCTGGTCGGTGCAGCTATCCGAGGTT CCAGCTTTCCTGCGACAACCGCAACCGAACCATTCTGAGCCTCCCAGGTT CCGGAGATTTGGTGGTGAAAAGCATAAACTACGAGTCCCAAACTCTTACC GTGAACGACCCCGAAGGTTGTCTCCCGAAACGTTTCTTGCAGAACTTGAG CCTTTCCCTGCACCCACCGTTCACGTTTGAGGCAACCGTTTACGACCTAA CGTTCCTTCGTTGTCCTTCCAACATGACACACTCCGTTGAATCTCCCCCA ATTTCATGCCTCGATTCGAATTCCTCCTCCTCGGTGACATTCTCGTGGTG GCCTCTCAATGGCACGTTGCCGTGGAGTGAGGAGTGTGAGGTGATATCCT CGGCTTTTGTTCCCATTCCGAATCCAGACACGACATCGTTTTTCATGCCT GATCTCAACAAGGATGTCGTGTTAAAGTGGAACGAACCCGCGTGTGGGGA TTGTGCTGGTCGTGGCCAAGTTTGTGGGTTCACCTCTCACACCAAAACTT TACAAGTAGGGTGCTTCTTCTATGCTCCTAACCAAAACCAAGGTACCAAA ACCTCTTTCTTTTTTTCTTTTTTTTAGTATAAAGAAATGATATACTGAAA ACTTCTAGTATACAACTTTTATTGATGATATCAAAAAATATATTTTTGTC ATATCATAAAAAAAAAATTATATAAAAAAATTATATTTTGATAACTTACT CTAATATACCACTTATGATATAAAACAAATGATATTTTTGTTATATCATA CAACAACTACTGAAATTTTATATAGAAAAATGATATAGTGACAATTTAGT ATAAAATTGATGATATGAAAAAAAAATGGTGTTTTTGTCATATACCATAC AAAAAATAAAATTTTAAATAGAGAAATGAGATTGTATATTGGAGTGGATG GTTAATATATCAAATTTTTTACTATATTTGCTTTTTTATTCTATTATTTT ATGATCCTATTTGTTGAAACTCTACAAATTTTCCACTTTTAAATTTATAA CCCATTTATTGCTTTTATATTTAATAATTTAATTTATATTTTAATTGAAT AATTTAATTTATATTTTAATTGAATAATTTAATTTCATTAATTATTATAA TTATTTCTAGTTGTTACAAGAATGTCAAATAAATATCATTACCCAAGATT CTTATTTTAAGGCTATATTTGGATTAATTAACAGAACCAAAATTTTGTGG CCAGGCTTGATGCCTTGGCCAATTGGCATGGTGTGACAGCTTAGGTAAAT AATTAATGAATGTTGAATATATTTATTTAAAGCAGTAAACAAATATTTTT ATTATTGAGTGATACTACGTTTTTTTCATTATGAAAGTATTATATTATTT ATTTGAAAAAGGCACAAATAATTATGTTTTTAAAAAATACTCTGATTAAA AATACTCAAATTCAATTGTTAAGTGAATTAATTATTCTTCGAGAGAAGTA AAGCTTTATTGTATAAATTAAGGTTTGTAATTAGTTAATAATAAAAAATG TCGTATAATGTGTCCGAGCATAACCATTAATTTTTCATTTTCATATTATA AATCTGGGTGCTCACTTAGTCGTGAGAATATCTTCACTAATTTGCTAGTA ATTAATATGTATCTTGTATAATGGACAGACATTTTAAATACAAAAATTTT AAAATAGTTATAGGTATTCAACATAAAAAAATATAGAATATAGTTTCAAA ACAACCAAATGTCTAAAAATAAAGTTAAAAATTACTGAATTCGGTAGGGA ATAATAATTTTAATAGAAAAATTAAAATCAATATACGAAGGGGAAATCAA ATATATAATTGTAAACAAATAGTAATTTAAAAATTCAAAATTTGTAAAAT ATATATAGGGGAATTTTCGTGTAATTTTTTCTACTACTAATAACATTTTA AGTCATAATATAAAATTTATCACTGATATAAAAATGAAAACGTGGTGGAA CAAAAAAATAAAAACAGGAAAGAAACAAATAGATAGTGTGAATAAACTCT CACATAGATAAAAAAAAAAAAAAACCCTCATTCTACTTAATTAATAGTGT TTAGAATGTTTGATTTTATATTGAACATTTTTTTAGTGCAACCTAACTTT AATACAATATATTAATTATCTTATTTTTATGTAATAAAGAAAATTATGTC AAATAAAGGATAATATATATTTTTATTTGTAAAACAATTATAAGACATAA AATATAAAAAAAATGGAGACGGTACGATAGCAATTATATTTTTGGTTTTA TAAAATAACGATTAAATTAAAAATTGAGAATTTATTTATTTTTATAGAAA TTTGTTTTGCTTCATTAAAGTAAGCCATAGTACAAAAACTGTTTCTGACA CGGACTCGTTGAATAGGTCTTTCAAGAAGCGCCAAATATGGGTTAACGAT CGGAGTGGGAATACCTGGGCTTTTATGTTTAACTGGGCTTTGCTGCTTTA TGTGTAGTAAATTCGATGTGTACGCACATGGTAACCGGGCTAGGCCCACC AGAGAGCTTCCAAGCTCCATTACGACTCTTCCACGATCCTCGCCCACAGT GGGCCTTATTGGGCCGGAAATTGAAAAATTGCCCAAGACTCTTATTGGTG AGAGTGGGCGCTTACCGAATTGGAACGATAACACGTGTCCAATTTGTCTC TCTGAATACGAGCCCAAGGAGACGCTAAGGACCATTCCTGCGTGCAACCA CTATTTTCATGCACACTGCATTGATGAGTGGCTGAAGATGAATGCCACGT GTCCCTTATGCAGAAATTCACCGGATCCATGTTCTACCGTTACCCCTTCT TCTTCTTCTTCTTTGCCATAGCTAATCCAATAGCCACGTGTTAGTCCTGT GTAGTAGAGAGACTCTTCACCTCCTATTTTTACTATCATATACAATTTTT TTTCTTTCTACTATTCGTAATTAGGATACAATTTAT
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Coding sequence (CDS) from alignment at Chr02:4286512..4289747-

>Phvul.002G046400.1_Pv_G19833_v2.1 ID=Phvul.002G046400.1_Pv_G19833_v2.1; Name=Phvul.002G046400.1; organism=Phaseolus vulgaris; type=CDS; length=1158bp; location=Sequence derived from: Chr02:4286512..4289747- (Phaseolus vulgaris
ATGTTGTGTCTGCCACTGTTGATCATCTTTCTCCTCCCTCTCAGAGGGGA
ATCAACGTGCCGCACAATCTCATGCGGCAAAATCAAAATTCACTTTCCGT
TTGGTCTGAAACAAACTCCGATCGAAGCTACAATTTCTGGTCGGTGCAGC
TATCCGAGGTTCCAGCTTTCCTGCGACAACCGCAACCGAACCATTCTGAG
CCTCCCAGGTTCCGGAGATTTGGTGGTGAAAAGCATAAACTACGAGTCCC
AAACTCTTACCGTGAACGACCCCGAAGGTTGTCTCCCGAAACGTTTCTTG
CAGAACTTGAGCCTTTCCCTGCACCCACCGTTCACGTTTGAGGCAACCGT
TTACGACCTAACGTTCCTTCGTTGTCCTTCCAACATGACACACTCCGTTG
AATCTCCCCCAATTTCATGCCTCGATTCGAATTCCTCCTCCTCGGTGACA
TTCTCGTGGTGGCCTCTCAATGGCACGTTGCCGTGGAGTGAGGAGTGTGA
GGTGATATCCTCGGCTTTTGTTCCCATTCCGAATCCAGACACGACATCGT
TTTTCATGCCTGATCTCAACAAGGATGTCGTGTTAAAGTGGAACGAACCC
GCGTGTGGGGATTGTGCTGGTCGTGGCCAAGTTTGTGGGTTCACCTCTCA
CACCAAAACTTTACAAGTAGGGTGCTTCTTCTATGCTCCTAACCAAAACC
AAGGTCTTTCAAGAAGCGCCAAATATGGGTTAACGATCGGAGTGGGAATA
CCTGGGCTTTTATGTTTAACTGGGCTTTGCTGCTTTATGTGTAGTAAATT
CGATGTGTACGCACATGGTAACCGGGCTAGGCCCACCAGAGAGCTTCCAA
GCTCCATTACGACTCTTCCACGATCCTCGCCCACAGTGGGCCTTATTGGG
CCGGAAATTGAAAAATTGCCCAAGACTCTTATTGGTGAGAGTGGGCGCTT
ACCGAATTGGAACGATAACACGTGTCCAATTTGTCTCTCTGAATACGAGC
CCAAGGAGACGCTAAGGACCATTCCTGCGTGCAACCACTATTTTCATGCA
CACTGCATTGATGAGTGGCTGAAGATGAATGCCACGTGTCCCTTATGCAG
AAATTCACCGGATCCATGTTCTACCGTTACCCCTTCTTCTTCTTCTTCTT
TGCCATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR025287WAK_GUB
Vocabulary: Molecular Function
TermDefinition
GO:0030247polysaccharide binding