Phvul.003G245900.2
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.003G245900.2 vs. DB:Swiss
Match: FABG_MYCS2 (3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) OX=246196 GN=fabG PE=1 SV=2) HSP 1 Score: 53.5286 bits (127), Expect = 1.268e-7 Identity = 43/152 (28.29%), Postives = 70/152 (46.05%), Query Frame = 1
Query: 46 IVGVGPNLGLSIARKFAHEGYTVAILARDLGRLSRFADEIAREEKAQVFAIRIDCSDSQSVIEAFEGVLS-LGFVEILVYNAYQPLPSYPTSFHDLRIDSFHKSLAVSSVGAFHCAQQVLPGMVERGKGTLLFTGCSASLNGIAGYSQLCKY 498
+ G +GL+IAR+ A +G+ VA+ R G +F ++ D +DS +V AF+ V G VE+LV NA ++ + R F + + + GAF CAQ+ M + G ++F G S++G+ G Y
Sbjct: 28 VTGGNRGIGLAIARRLAADGHKVAVTHRGSG------------APDDLFGVQCDVTDSAAVDRAFKEVEEHQGPVEVLVANAGISKDAFLMRMTEER---FEEVINTNLTGAFRCAQRASRTMQRKRFGRIIFIG---SVSGMWGIGNQANY 161
BLAST of Phvul.003G245900.2 vs. DB:Swiss
Match: YDFG_SALTY (NADP-dependent 3-hydroxy acid dehydrogenase YdfG OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=ydfG PE=3 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 1.447e-7 Identity = 38/142 (26.76%), Postives = 63/142 (44.37%), Query Frame = 1
Query: 37 IAAIVGVGPNLGLSIARKFAHEGYTVAILARDLGRLSRFADEIAREEKAQVFAIRIDCSDSQSVIEAFEGVLSLGF--VEILVYNAYQPLPSYPTSFHDLRIDSFHKSLAVSSVGAFHCAQQVLPGMVERGKGTLLFTGCSA 456
I + G G IAR+F G+ V R RL DE+ V ++D + ++ IE L + +++LV NA L P H ++ + + ++ G + + VLPGMVER +G ++ G +A
Sbjct: 2 IVLVTGATAGFGECIARRFVENGHKVIATGRRHERLQALKDELGE----NVLTAQLDVRN-RAAIEEMMASLPAQWRDIDVLVNNAGLALGLEPA--HKASVEDWETMIDTNNKGLIYMTRAVLPGMVERNRGHIINIGSTA 136
BLAST of Phvul.003G245900.2 vs. DB:Swiss
Match: YDFG_SALTI (NADP-dependent 3-hydroxy acid dehydrogenase YdfG OS=Salmonella typhi OX=90370 GN=ydfG PE=3 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 1.447e-7 Identity = 38/142 (26.76%), Postives = 63/142 (44.37%), Query Frame = 1
Query: 37 IAAIVGVGPNLGLSIARKFAHEGYTVAILARDLGRLSRFADEIAREEKAQVFAIRIDCSDSQSVIEAFEGVLSLGF--VEILVYNAYQPLPSYPTSFHDLRIDSFHKSLAVSSVGAFHCAQQVLPGMVERGKGTLLFTGCSA 456
I + G G IAR+F G+ V R RL DE+ V ++D + ++ IE L + +++LV NA L P H ++ + + ++ G + + VLPGMVER +G ++ G +A
Sbjct: 2 IVLVTGATAGFGECIARRFVENGHKVIATGRRHERLQALKDELGE----NVLTAQLDVRN-RAAIEEMMASLPAQWRDIDVLVNNAGLALGLEPA--HKASVEDWETMIDTNNKGLIYMTRAVLPGMVERNRGHIINIGSTA 136
BLAST of Phvul.003G245900.2 vs. DB:Swiss
Match: YDFG_ECOL6 (NADP-dependent 3-hydroxy acid dehydrogenase YdfG OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=ydfG PE=3 SV=2) HSP 1 Score: 52.7582 bits (125), Expect = 2.400e-7 Identity = 36/141 (25.53%), Postives = 61/141 (43.26%), Query Frame = 1
Query: 37 IAAIVGVGPNLGLSIARKFAHEGYTVAILARDLGRLSRFADEIAREEKAQVFAIRIDCSDSQSVIEAFEGV-LSLGFVEILVYNAYQPLPSYPTSFHDLRIDSFHKSLAVSSVGAFHCAQQVLPGMVERGKGTLLFTGCSA 456
I + G G I R+F +G+ V R RL DE+ ++ ++D + ++ E + ++ILV NA L P H I+ + + ++ G + + VLPGMVER G ++ G +A
Sbjct: 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGD----NLYIAQLDVRNRAAIEEMLASLPAEWSNIDILVNNAGLALGMEPA--HKASIEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTA 136
BLAST of Phvul.003G245900.2 vs. DB:Swiss
Match: YDFG_SHIFL (NADP-dependent 3-hydroxy acid dehydrogenase YdfG OS=Shigella flexneri OX=623 GN=ydfG PE=3 SV=2) HSP 1 Score: 52.373 bits (124), Expect = 3.574e-7 Identity = 35/141 (24.82%), Postives = 61/141 (43.26%), Query Frame = 1
Query: 37 IAAIVGVGPNLGLSIARKFAHEGYTVAILARDLGRLSRFADEIAREEKAQVFAIRIDCSDSQSVIEAFEGV-LSLGFVEILVYNAYQPLPSYPTSFHDLRIDSFHKSLAVSSVGAFHCAQQVLPGMVERGKGTLLFTGCSA 456
I + G G I R+F +G+ V R RL DE+ ++ ++D + ++ E + ++ILV NA L P H ++ + + ++ G + + VLPGMVER G ++ G +A
Sbjct: 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELTDELGD----NLYIAQLDVRNRAAIEEMLASLPAEWSNIDILVNNAGLALGMEPA--HKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTA 136
BLAST of Phvul.003G245900.2 vs. DB:Swiss
Match: DHB12_BOVIN (Very-long-chain 3-oxoacyl-CoA reductase OS=Bos taurus OX=9913 GN=HSD17B12 PE=2 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 3.667e-7 Identity = 37/136 (27.21%), Postives = 69/136 (50.74%), Query Frame = 1
Query: 40 AAIVGVGPNLGLSIARKFAHEGYTVAILARDLGRLSRFADEIAREEKAQVFAIRIDCSDSQSVIEAFEGVLSLGFVEILVYN---AYQPLPSYPTSFHDLRIDSFHKSLAVSSVGAFHCAQQVLPGMVERGKGTLL 438
A + G +G S A + A G + +++R +L + + EI+ + K + I +D + S+ + + + L+ + +LV N +Y+ P Y DL ++ K + V+++ + VLPGMVER KG +L
Sbjct: 53 AVVTGGTDGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDFT-SEDIYDKIKASLAGLNIGVLVNNVGMSYE-YPEYFLDVPDLD-NTIKKLITVNALSVCKMTRLVLPGMVERSKGAIL 185
BLAST of Phvul.003G245900.2 vs. DB:Swiss
Match: KCR1_ARATH (Very-long-chain 3-oxoacyl-CoA reductase 1 OS=Arabidopsis thaliana OX=3702 GN=KCR1 PE=1 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 4.809e-7 Identity = 39/146 (26.71%), Postives = 72/146 (49.32%), Query Frame = 1
Query: 40 AAIVGVGPNLGLSIARKFAHEGYTVAILARDLGRLSRFADEI-AREEKAQVFAIRIDCSDS-----QSVIEAFEGVLSLGFVEILVYNAYQPLPSYPTSFHDLRIDSFHKSLAVSSVGAFHCAQQVLPGMVERGKGTLLFTGCSAS 459
A I G +G + A + A +G + ++AR+ +L +D I ++ + Q+ + +D S + + E+ EG L +G IL+ NA P Y FH++ + + + ++ G Q VLP M++R KG ++ G A+
Sbjct: 54 AIITGPTDGIGKAFAFQLAQKGLNLILVARNPDKLKDVSDSIRSKYSQTQILTVVMDFSGDIDEGVKRIKESIEG-LDVG---ILINNAGMSYP-YAKYFHEVDEELINNLIKINVEGTTKVTQAVLPNMLKRKKGAIINMGSGAA 194
BLAST of Phvul.003G245900.2 vs. DB:Swiss
Match: SRLD_ECOLI (Sorbitol-6-phosphate 2-dehydrogenase OS=Escherichia coli (strain K12) OX=83333 GN=srlD PE=1 SV=2) HSP 1 Score: 51.9878 bits (123), Expect = 5.175e-7 Identity = 39/131 (29.77%), Postives = 66/131 (50.38%), Query Frame = 1
Query: 37 IAAIVGVGPNLGLSIARKFAHEGYTVAILARDLGRLSRFADEIAREE-KAQVFAIRIDCSDSQSVIEAFEGVLSL-GFVEILVYNAYQPLPSYPTSFHDLRIDSFHKSLAVSSVGAFHCAQQVLPGMVERG 423
+A ++G G LG + A EGY VA++ + + A EI E ++ + D + QSV+ GV + G V++LVY+A ++ + D ++ F +SL V+ VG F CA++ M+ G
Sbjct: 4 VAVVIGGGQTLGAFLCHGLAAEGYRVAVVDIQSDKAANVAQEINAEYGESMAYGFGADATSEQSVLALSRGVDEIFGRVDLLVYSAGIAKAAFIS---DFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDG 131
BLAST of Phvul.003G245900.2 vs. DB:Swiss
Match: MKAR_ASPFU (Very-long-chain 3-oxoacyl-CoA reductase OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=AFUA_2G11540 PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 7.053e-7 Identity = 30/137 (21.90%), Postives = 64/137 (46.72%), Query Frame = 1
Query: 40 AAIVGVGPNLGLSIARKFAHEGYTVAILARDLGRLSRFADEIAREEKAQVFAIRID-CSDSQSVIEAFEGVLSLGFVEILVYNAYQPLPSYPTSFHDLRIDSFHKSLAVSSVGAFHCAQQVLPGMVERGKGTLLFTG 447
A + G LG + + A G+ + +++R +L+ A+EI + Q + +D +++ + E + ++ V +L+ N + PT F D + ++ +G Q ++PGM++R +G +L G
Sbjct: 70 AVVTGASDGLGKEFSLQLARAGFNIVLVSRTASKLTTLAEEITTKHSVQTKTLAMDYAANNDADYEELKAIVDGLDVAVLINNVGKS-HDIPTPFALTPEDEMTDIVTINCLGTLRTTQLIIPGMMQRKRGLVLTMG 205
BLAST of Phvul.003G245900.2 vs. DB:Swiss
Match: MKAR_ASPFC (Very-long-chain 3-oxoacyl-CoA reductase OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=AFUB_027290 PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 7.053e-7 Identity = 30/137 (21.90%), Postives = 64/137 (46.72%), Query Frame = 1
Query: 40 AAIVGVGPNLGLSIARKFAHEGYTVAILARDLGRLSRFADEIAREEKAQVFAIRID-CSDSQSVIEAFEGVLSLGFVEILVYNAYQPLPSYPTSFHDLRIDSFHKSLAVSSVGAFHCAQQVLPGMVERGKGTLLFTG 447
A + G LG + + A G+ + +++R +L+ A+EI + Q + +D +++ + E + ++ V +L+ N + PT F D + ++ +G Q ++PGM++R +G +L G
Sbjct: 70 AVVTGASDGLGKEFSLQLARAGFNIVLVSRTASKLTTLAEEITTKHSVQTKTLAMDYAANNDADYEELKAIVDGLDVAVLINNVGKS-HDIPTPFALTPEDEMTDIVTINCLGTLRTTQLIIPGMMQRKRGLVLTMG 205 The following BLAST results are available for this feature:
BLAST of Phvul.003G245900.2 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.003G245900.2_Pv_G19833_v2.1 >Phvul.003G245900.2_Pv_G19833_v2.1 ID=Phvul.003G245900.2_Pv_G19833_v2.1; Name=Phvul.003G245900.2_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=188bpback to top mRNA from alignment at Chr03:48287439..48290673+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.003G245900.2_Pv_G19833_v2.1 ID=Phvul.003G245900.2_Pv_G19833_v2.1; Name=Phvul.003G245900.2; organism=Phaseolus vulgaris; type=mRNA; length=3235bp; location=Sequence derived from: Chr03:48287439..48290673+ (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr03:48287439..48290673+ >Phvul.003G245900.2_Pv_G19833_v2.1 ID=Phvul.003G245900.2_Pv_G19833_v2.1; Name=Phvul.003G245900.2; organism=Phaseolus vulgaris; type=CDS; length=564bp; location=Sequence derived from: Chr03:48287439..48290673+ (Phaseolus vulgarisback to top |