Phvul.004G101900.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.004G101900.1 vs. DB:Swiss
Match: PLY4_ARATH (Probable pectate lyase 4 OS=Arabidopsis thaliana OX=3702 GN=At1g30350 PE=2 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 6.329e-34 Identity = 78/191 (40.84%), Postives = 102/191 (53.40%), Query Frame = 1 Query: 157 ITQTKHLKIDHNTLYDCQDGLFDVTRGSTDVTISNNWFKNQDKVMLLGHDDRYVRDETMKVTVVYNHFEPNCNQ-------------SNFYQGWLQYGIGRSMERSLKSEANPFVAPTI-GNKEVTWRKGNDKNEDKWKFHSIRDVFENGPYFNVTKGGDVKKLNDSKERNFKVVDAKFVRFITHSSGVLR 687 + Q+ H+ IDH L C DGL DV ST VTISNN+F DKVMLLGHDD Y+ D+ M+VT+ +N F P + +N Y+ W Y IG S + SE N FVAP +K+VT R + +WK+ + RDVF NG +F G V+ L E F+V V +T S+G LR Sbjct: 173 VFQSTHVWIDHCFLSRCHDGLIDVIVSSTAVTISNNYFTQHDKVMLLGHDDSYMGDKDMRVTIAFNTFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSANPIIFSEGNYFVAPEKRSSKQVTKRMMAGPDSKRWKWGTSRDVFMNGAFFG-PPGVIVRPLYKGGE-GFRVAHGSLVPSLTSSAGPLR 361
BLAST of Phvul.004G101900.1 vs. DB:Swiss
Match: PLY1_HESAR (Pectate lyase 1 OS=Hesperocyparis arizonica OX=49011 PE=1 SV=2) HSP 1 Score: 127.487 bits (319), Expect = 1.129e-33 Identity = 80/184 (43.48%), Postives = 99/184 (53.80%), Query Frame = 1 Query: 181 IDHNTLYDCQDGLFDVTRGSTDVTISNNWFKNQDKVMLLGHDDRYVRDETMKVTVVYNHFEPNCNQ-------------SNFYQGWLQYGIGRSMERSLKSEANPFVAPTIG-NKEVTWRKGNDKNE--DKWKFHSIRDVFENGPYFNVTKGGDVKKLNDSKERNFKVVDAKFVRFITHSSGVL 684 IDHN+L DC DGL DVT GST +TISNN F N KVMLLGHDD Y D++MKVTV +N F PN Q +N Y W Y IG S ++ SE N F AP KEVT R G + W + S RD F NG YF + + + +S E FKV + +T ++GV+ Sbjct: 184 IDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDQWNIYAIGGSSNPTILSEGNSFTAPNESYKKEVTKRIGCETTSACANWVWRSTRDAFTNGAYFVSSGKAEDTNIYNSNEA-FKVENGNAAPQLTQNAGVV 366
BLAST of Phvul.004G101900.1 vs. DB:Swiss
Match: PLY2_ARATH (Putative pectate lyase 2 OS=Arabidopsis thaliana OX=3702 GN=At1g11920 PE=3 SV=2) HSP 1 Score: 127.872 bits (320), Expect = 1.142e-33 Identity = 78/192 (40.62%), Postives = 104/192 (54.17%), Query Frame = 1 Query: 157 ITQTKHLKIDHNTLYDCQDGLFDVTRGSTDVTISNNWFKNQDKVMLLGHDDRYVRDETMKVTVVYNHFEPNCNQ-------------SNFYQGWLQYGIGRSMERSLKSEANPFVA---PTIGNKEVTWRKGNDKNEDKWKFHSIRDVFENGPYFNVTKGGDVKKLNDSKERNFKVVDAKFVRFITHSSGVL 684 I + H+ IDH CQDGL DV ST VTISNN+F DKVMLLGH+D V D+ M+VT+ +NHF P + +N Y+ W Y IG S + ++ SE N FVA P+ K+VT R + + +WK+ + +DVF+NG YF + G V L ER F V V +T S+G L Sbjct: 188 IFDSSHIWIDHCFFSRCQDGLIDVLHASTAVTISNNYFTQHDKVMLLGHNDNNVEDKIMRVTIAFNHFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSADPTIFSEGNYFVASDDPS--KKQVTKRIDSGYDWKRWKWRTSKDVFKNGAYFVPSGYGTVTPLYGRAER-FPVSHGSLVPLLTSSAGPL 376
BLAST of Phvul.004G101900.1 vs. DB:Swiss
Match: PLY1_JUNAS (Pectate lyase 1 OS=Juniperus ashei OX=13101 PE=1 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 3.417e-33 Identity = 80/184 (43.48%), Postives = 100/184 (54.35%), Query Frame = 1 Query: 181 IDHNTLYDCQDGLFDVTRGSTDVTISNNWFKNQDKVMLLGHDDRYVRDETMKVTVVYNHFEPNCNQ-------------SNFYQGWLQYGIGRSMERSLKSEANPFVAPTIG-NKEVTWRKGNDKNE--DKWKFHSIRDVFENGPYFNVTKGGDVKKLNDSKERNFKVVDAKFVRFITHSSGVL 684 IDHN+L DC DGL DVT GST +TISNN F N KVMLLGHDD Y D++MKVTV +N F PN Q +N Y W Y IG S ++ SE N F AP+ KEVT R G + W + S RD F NG YF + + + +S E FKV + +T ++GV+ Sbjct: 184 IDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETNIYNSNEA-FKVENGNAAPQLTKNAGVV 366
BLAST of Phvul.004G101900.1 vs. DB:Swiss
Match: PLY1_JUNVI (Pectate lyase 1 OS=Juniperus virginiana OX=39584 PE=1 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 4.674e-33 Identity = 82/186 (44.09%), Postives = 101/186 (54.30%), Query Frame = 1 Query: 181 IDHNTLYDCQDGLFDVTRGSTDVTISNNWFKNQDKVMLLGHDDRYVRDETMKVTVVYNHFEPNCNQ-------------SNFYQGWLQYGIGRSMERSLKSEANPFVAPTIG-NKEVTWRKGNDKNE--DKWKFHSIRDVFENGPYFNVTKGGDVKKLN--DSKERNFKVVDAKFVRFITHSSGVL 684 IDHN+L DC DGL DVT GST +TISNN F N KVMLLGHDD Y D++MKVTV +N F PN Q +N Y W Y IG S ++ SE N F AP KEVT R G + W + S RD F NG YF G +++ N +S E FKV + +T ++GV+ Sbjct: 184 IDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPNENYKKEVTKRIGCESTSACANWVWRSTRDAFSNGAYF--VSSGKIEETNIYNSNEA-FKVENGNAAPQLTKNAGVV 366
BLAST of Phvul.004G101900.1 vs. DB:Swiss
Match: PLY10_ARATH (Probable pectate lyase 10 OS=Arabidopsis thaliana OX=3702 GN=At3g24670 PE=2 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 5.087e-33 Identity = 81/218 (37.16%), Postives = 115/218 (52.75%), Query Frame = 1 Query: 109 GNDLIHYKVSH------SSDDPIT--QTKHLKIDHNTLYDCQDGLFDVTRGSTDVTISNNWFKNQDKVMLLGHDDRYVRDETMKVTVVYNHF-------EPNCNQSNF------YQGWLQYGIGRSMERSLKSEANPFVAPTIGN---KEVTWRKGNDKNE-DKWKFHSIRDVFENGPYFNVTKGGDVKKLNDSKERNFKVVDAKFVRFITHSSGVLR 687 GN ++ SH + D I+ + H+ IDHN+L +C DGL D GST +TISNN+ + ++VML+GH D Y RD+ M+VT+ YNHF P C F Y W+ Y IG S ++ S+ N F+AP GN KEVT R G+ + E +W + S D+ NG YF TK G + ++ + A V +T+SSG L+ Sbjct: 220 GNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITISNNYMTHHNEVMLMGHSDSYTRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRFLAP--GNPFAKEVTKRVGSWQGEWKQWNWRSQGDLMLNGAYF--TKSGAAAPASYARASSLGAKPASVVSMLTYSSGALK 433
BLAST of Phvul.004G101900.1 vs. DB:Swiss
Match: PLY9_ARATH (Probable pectate lyase 9 OS=Arabidopsis thaliana OX=3702 GN=At3g24230 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.834e-32 Identity = 78/191 (40.84%), Postives = 100/191 (52.36%), Query Frame = 1 Query: 157 ITQTKHLKIDHNTLYDCQDGLFDVTRGSTDVTISNNWFKNQDKVMLLGHDDRYVRDETMKVTVVYNHFE-------PNCNQSNF------YQGWLQYGIGRSMERSLKSEANPFVAP-TIGNKEVTWRKGNDKNE-DKWKFHSIRDVFENGPYFNVTKGGDVKKLNDSKERNFKVVDAKFVRFITHSSGVL 684 I + H+ IDHN+L +C DGL DV GST +TISNN F + D+VMLLGH+D Y RD+ M+VTV YNHF P C F Y W Y IG S ++ S+ N F AP KEVT R NE +W + S +D+ NG +F + G DS+ + A V IT S+G L Sbjct: 256 IFGSSHIWIDHNSLSNCTDGLVDVVNGSTAITISNNHFTHHDEVMLLGHNDSYTRDKMMQVTVAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWKMYAIGGSANPTINSQGNRFAAPKNHSAKEVTKRLDTKGNEWMEWNWRSEKDLLVNGAFFTPSGEG---ASGDSQTLSLPAKPASMVDAITASAGAL 443
BLAST of Phvul.004G101900.1 vs. DB:Swiss
Match: PLY16_ARATH (Probable pectate lyase 16 OS=Arabidopsis thaliana OX=3702 GN=At4g22080 PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 5.946e-32 Identity = 82/217 (37.79%), Postives = 112/217 (51.61%), Query Frame = 1 Query: 94 MINNIGNDLIHYKVSHSSDDPITQTKHLKIDHNTLYDCQDGLFDVTRGSTDVTISNNWFKNQDKVMLLGHDDRYVRDETMKVTVVYNHFEPNCNQ-------------SNFYQGWLQYGIGRSMERSLKSEANPFVAPTIGN-KEVTWR--KGNDKNEDKWKFHSIRDVFENGPYFNVTKGGDVKKLNDSKERNFKVVDAKFVRFITHSSGVLRYNK 696 M+ + + H K S I + ++ IDH L C DGL DV ST +TISNN+F DKVMLLGH+D +V+D MKVTV +NHF P + +N Y W+ Y IG S + ++ SE N F+A N KEVT R KG N W++ + +DVF+NG YF + G + S +R F V V +T +G L N+ Sbjct: 177 MVRSSPTHVGHRKGSDGDAIAIFGSSNIWIDHCYLASCTDGLIDVIHASTGITISNNYFTQHDKVMLLGHNDDFVQDVKMKVTVAFNHFGPGLVERMPRVRRGYAHVANNRYDKWIMYAIGGSADPTIFSEGNYFIASDKSNSKEVTKREVKGGWNN---WRWRTSKDVFKNGAYFVPSGYGSISLPYSSAQR-FTVAPGNLVPSLTADAGPLNCNR 389
BLAST of Phvul.004G101900.1 vs. DB:Swiss
Match: PLY1_CRYJA (Pectate lyase 1 OS=Cryptomeria japonica OX=3369 PE=1 SV=3) HSP 1 Score: 120.168 bits (300), Expect = 8.435e-31 Identity = 78/187 (41.71%), Postives = 100/187 (53.48%), Query Frame = 1 Query: 181 IDHNTLYDCQDGLFDVTRGSTDVTISNNWFKNQDKVMLLGHDDRYVRDETMKVTVVYNHFEPNCNQ-------------SNFYQGWLQYGIGRSMERSLKSEANPFVAPTIG-NKEVTWRKG--NDKNEDKWKFHSIRDVFENGPYFNVT---KGGDVKKLNDSKERNFKVVDAKFVRFITHSSGVL 684 IDHN+ + DGL DVT ST VTISNN F N KVMLLGHDD Y D++MKVTV +N F PNC Q +N Y W Y IG S ++ SE N F AP K+VT R G + W + S +DVF NG YF + +GG++ +K+ F V + +T ++GVL Sbjct: 184 IDHNSFSNSSDGLVDVTLTSTGVTISNNLFFNHHKVMLLGHDDAYSDDKSMKVTVAFNQFGPNCGQRMPRARYGLVHVANNNYDPWTIYAIGGSSNPTILSEGNSFTAPNESYKKQVTIRIGCKTSSSCSNWVWQSTQDVFYNGAYFVSSGKYEGGNIY----TKKEAFNVENGNATPQLTKNAGVL 366
BLAST of Phvul.004G101900.1 vs. DB:Swiss
Match: PLY17_ARATH (Putative pectate lyase 17 OS=Arabidopsis thaliana OX=3702 GN=At4g22090 PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.532e-30 Identity = 79/207 (38.16%), Postives = 107/207 (51.69%), Query Frame = 1 Query: 124 HYKVSHSSDDPITQTKHLKIDHNTLYDCQDGLFDVTRGSTDVTISNNWFKNQDKVMLLGHDDRYVRDETMKVTVVYNHFEPNCNQ-------------SNFYQGWLQYGIGRSMERSLKSEANPFVAPTIG-NKEVTWR--KGNDKNEDKWKFHSIRDVFENGPYFNVTKGGDVKKLNDSKERNFKVVDAKFVRFITHSSGVLRYNK 696 H K S I + ++ IDH L C DGL DV ST +TISNN+F DKVMLLGH+D +V+D MKVTV +NHF P + +N Y W+ Y IG S + ++ SE N F+A +KEVT R KG N W++ + DVF+NG +F + G + S +R F V V +T +G L N+ Sbjct: 187 HRKGSDGDAITIFGSSNVWIDHCYLASCTDGLIDVIHASTAITISNNYFTQHDKVMLLGHNDNFVKDVKMKVTVAFNHFGPGLVERMPRVRRGYAHVANNRYDKWIMYAIGGSADPTIFSEGNYFIASDKSYSKEVTKREVKGGWNN---WRWRTSNDVFKNGAFFVPSGYGSIPLPYSSAQR-FTVAPGNLVPSLTADAGPLNCNR 389 The following BLAST results are available for this feature:
BLAST of Phvul.004G101900.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.004G101900.1_Pv_G19833_v2.1 >Phvul.004G101900.1_Pv_G19833_v2.1 ID=Phvul.004G101900.1_Pv_G19833_v2.1; Name=Phvul.004G101900.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=237bpback to top mRNA from alignment at Chr04:34848674..34850814+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.004G101900.1_Pv_G19833_v2.1 ID=Phvul.004G101900.1_Pv_G19833_v2.1; Name=Phvul.004G101900.1; organism=Phaseolus vulgaris; type=mRNA; length=2141bp; location=Sequence derived from: Chr04:34848674..34850814+ (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr04:34848674..34850814+ >Phvul.004G101900.1_Pv_G19833_v2.1 ID=Phvul.004G101900.1_Pv_G19833_v2.1; Name=Phvul.004G101900.1; organism=Phaseolus vulgaris; type=CDS; length=711bp; location=Sequence derived from: Chr04:34848674..34850814+ (Phaseolus vulgarisback to top |