Phvul.005G124600.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.005G124600.1 vs. DB:Swiss
Match: CEN_ARATH (Protein CENTRORADIALIS-like OS=Arabidopsis thaliana OX=3702 GN=CEN PE=2 SV=1) HSP 1 Score: 284.263 bits (726), Expect = 3.031e-98 Identity = 135/175 (77.14%), Postives = 151/175 (86.29%), Query Frame = 1 Query: 7 MNMISTDPLVIGRVIGDVVDPFTTTLKITVSYN-NKQVYNGHEFFPSSVTTKPKVQIRGGDMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDTTFGNEVVNYEIPRPNIGIHRFVFLLFKQKCRQAVMKVPSSRDLFNTRSFAEENDLGLPVAAVFFNAQRETAARRR 528 M IS+DPL++GRVIGDVVD +K+TV+YN +KQVYNGHE FPS VT KPKV++ GGDMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTD +FG E++ YE+PRPNIGIHRFV+LLFKQ R +V+ VPS RD FNTR FA ENDLGLPVAAVFFN QRETAARRR Sbjct: 1 MARISSDPLMVGRVIGDVVDNCLQAVKMTVTYNSDKQVYNGHELFPSVVTYKPKVEVHGGDMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDVSFGKEIIGYEMPRPNIGIHRFVYLLFKQTRRGSVVSVPSYRDQFNTREFAHENDLGLPVAAVFFNCQRETAARRR 175
BLAST of Phvul.005G124600.1 vs. DB:Swiss
Match: CET2_TOBAC (CEN-like protein 2 OS=Nicotiana tabacum OX=4097 GN=CET2 PE=2 SV=1) HSP 1 Score: 282.722 bits (722), Expect = 1.422e-97 Identity = 132/175 (75.43%), Postives = 152/175 (86.86%), Query Frame = 1 Query: 7 MNMISTDPLVIGRVIGDVVDPFTTTLKITVSYNN-KQVYNGHEFFPSSVTTKPKVQIRGGDMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDTTFGNEVVNYEIPRPNIGIHRFVFLLFKQKCRQAVMKVPSSRDLFNTRSFAEENDLGLPVAAVFFNAQRETAARRR 528 M +DPLVIGRVIG+VVD FT ++K++V+YN+ K VYNGHE FPSSVT+KP+V++ GGD+RSFFT++M DPDVPGPSDPYLREHLHWIVTDIPGTTD +FG E+V YE+PRPNIGIHRFVFLLFKQK RQ V+ P SRD FNTR FAEEN+LG PVAAVFFN QRETAARRR Sbjct: 1 MGSKMSDPLVIGRVIGEVVDYFTPSVKMSVTYNSSKHVYNGHELFPSSVTSKPRVEVHGGDLRSFFTMIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGKEIVGYEMPRPNIGIHRFVFLLFKQKKRQTVLTAPLSRDRFNTRKFAEENELGSPVAAVFFNCQRETAARRR 175
BLAST of Phvul.005G124600.1 vs. DB:Swiss
Match: CET4_TOBAC (CEN-like protein 4 OS=Nicotiana tabacum OX=4097 GN=CET4 PE=2 SV=1) HSP 1 Score: 280.026 bits (715), Expect = 1.770e-96 Identity = 130/175 (74.29%), Postives = 151/175 (86.29%), Query Frame = 1 Query: 7 MNMISTDPLVIGRVIGDVVDPFTTTLKITVSYNN-KQVYNGHEFFPSSVTTKPKVQIRGGDMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDTTFGNEVVNYEIPRPNIGIHRFVFLLFKQKCRQAVMKVPSSRDLFNTRSFAEENDLGLPVAAVFFNAQRETAARRR 528 M +DPLVIGRVIG+VVD FT ++K++V+YN+ K VYNGHE FPSSVT+KP+V++ GGD+RSFFTL+M DPDVPGPSDPYLREHLHWIVTDIPGTTD +FG E+V YE+PRPNIGIHRFVFLLFKQK RQ ++ P SRD FNTR F+EEN+LG PVAA FFN QRETAARRR Sbjct: 1 MGSKMSDPLVIGRVIGEVVDYFTPSVKMSVTYNSSKHVYNGHELFPSSVTSKPRVEVHGGDLRSFFTLIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGREIVGYEMPRPNIGIHRFVFLLFKQKKRQTLLSAPLSRDRFNTRKFSEENELGSPVAAAFFNCQRETAARRR 175
BLAST of Phvul.005G124600.1 vs. DB:Swiss
Match: SELFP_SOLLC (Protein SELF-PRUNING OS=Solanum lycopersicum OX=4081 GN=SP PE=2 SV=1) HSP 1 Score: 278.485 bits (711), Expect = 5.912e-96 Identity = 132/177 (74.58%), Postives = 151/177 (85.31%), Query Frame = 1 Query: 1 MAMNMISTDPLVIGRVIGDVVDPFTTTLKITVSYNN-KQVYNGHEFFPSSVTTKPKVQIRGGDMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDTTFGNEVVNYEIPRPNIGIHRFVFLLFKQKCRQAVMKVPSSRDLFNTRSFAEENDLGLPVAAVFFNAQRETAARRR 528 MA M +PLVIGRVIG+VVD F ++K++V YNN K VYNGHEFFPSSVT+KP+V++ GGD+RSFFTL+M DPDVPGPSDPYLREHLHWIVTDIPGTTD +FG EVV YE+PRPNIGIHRFVFLLFKQK RQ + P SRD F++R F+EEN+LG PVAAVFFN QRETAARRR Sbjct: 1 MASKM--CEPLVIGRVIGEVVDYFCPSVKMSVVYNNNKHVYNGHEFFPSSVTSKPRVEVHGGDLRSFFTLIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGREVVGYEMPRPNIGIHRFVFLLFKQKKRQTISSAPVSRDQFSSRKFSEENELGSPVAAVFFNCQRETAARRR 175
BLAST of Phvul.005G124600.1 vs. DB:Swiss
Match: CEN_ANTMA (Protein CENTRORADIALIS OS=Antirrhinum majus OX=4151 GN=CEN PE=1 SV=1) HSP 1 Score: 277.715 bits (709), Expect = 1.616e-95 Identity = 133/177 (75.14%), Postives = 152/177 (85.88%), Query Frame = 1 Query: 16 ISTDPLVIGRVIGDVVDPFTTTLKITVSYNN----KQVYNGHEFFPSSVTTKPKVQIRGGDMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDTTFGNEVVNYEIPRPNIGIHRFVFLLFKQKCRQAVMKVPS--SRDLFNTRSFAEENDLGLPVAAVFFNAQRETAARRR 528 +S+DPLVIGRVIGDVVD FT+T+K++V YN+ K VYNGHE FPS+VT+ P+V++ GGDMRSFFTL+MTDPDVPGPSDPYLREHLHWIVTDIPGTTD++FG EVV+YE+PRPNIGIHRFVFLLFKQK R M P RD FNTR F +EN+LGLPVAAVFFN QRETAARRR Sbjct: 5 VSSDPLVIGRVIGDVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDMRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSYEMPRPNIGIHRFVFLLFKQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPVAAVFFNCQRETAARRR 181
BLAST of Phvul.005G124600.1 vs. DB:Swiss
Match: TFL1_ARATH (Protein TERMINAL FLOWER 1 OS=Arabidopsis thaliana OX=3702 GN=TFL1 PE=1 SV=1) HSP 1 Score: 265.003 bits (676), Expect = 1.329e-90 Identity = 124/168 (73.81%), Postives = 146/168 (86.90%), Query Frame = 1 Query: 25 DPLVIGRVIGDVVDPFTTTLKITVSYNNKQVYNGHEFFPSSVTTKPKVQIRGGDMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDTTFGNEVVNYEIPRPNIGIHRFVFLLFKQKCRQAVMKVPSSRDLFNTRSFAEENDLGLPVAAVFFNAQRETAARRR 528 +PL++GRV+GDV+D FT T K+ VSYN KQV NGHE FPSSV++KP+V+I GGD+RSFFTLVM DPDVPGPSDP+L+EHLHWIVT+IPGTTD TFG EVV+YE+PRP+IGIHRFVF+LF+QK R+ + SRD FNTR FA E DLGLPVAAVFFNAQRETAAR+R Sbjct: 10 EPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFVFVLFRQKQRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR 177
BLAST of Phvul.005G124600.1 vs. DB:Swiss
Match: CET1_TOBAC (CEN-like protein 1 OS=Nicotiana tabacum OX=4097 GN=CET1 PE=2 SV=1) HSP 1 Score: 241.121 bits (614), Expect = 3.309e-81 Identity = 112/169 (66.27%), Postives = 138/169 (81.66%), Query Frame = 1 Query: 25 DPLVIGRVIGDVVDPFTTTLKITVSYN-NKQVYNGHEFFPSSVTTKPKVQIRGGDMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDTTFGNEVVNYEIPRPNIGIHRFVFLLFKQKCRQAVMKVPSSRDLFNTRSFAEENDLGLPVAAVFFNAQRETAARRR 528 +PLV+ RVIG+VVD F ++K+ V YN +KQV+NGHE P+ + KP+V+I G DMRS +TL+MTDPDVPGPSDPYLREHLHWIVTDIPG+TD++FG E+V+YE P+P IGIHR+V LL+KQ RQ V K ++RD FNTR + EN LG PVAAV+FNAQRETAARRR Sbjct: 7 EPLVVARVIGEVVDSFNPSVKLNVIYNGSKQVFNGHELMPAVIAAKPRVEIGGEDMRSAYTLIMTDPDVPGPSDPYLREHLHWIVTDIPGSTDSSFGREIVSYESPKPVIGIHRYVLLLYKQSGRQTV-KPAATRDHFNTRRYTAENGLGSPVAAVYFNAQRETAARRR 174
BLAST of Phvul.005G124600.1 vs. DB:Swiss
Match: BFT_ARATH (Protein BROTHER of FT and TFL 1 OS=Arabidopsis thaliana OX=3702 GN=BFT PE=3 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 4.921e-72 Identity = 100/169 (59.17%), Postives = 130/169 (76.92%), Query Frame = 1 Query: 25 DPLVIGRVIGDVVDPFTTTLKITVSYN-NKQVYNGHEFFPSSVTTKPKVQIRGGDMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDTTFGNEVVNYEIPRPNIGIHRFVFLLFKQKCRQAVMKVPSSRDLFNTRSFAEENDLGLPVAAVFFNAQRETAARRR 528 +PL++GRVIGDV++ F ++ + V++N N V NGHE PS + +KP+V+I G D+RSFFTL+M DPD P PS+PY+RE+LHW+VTDIPGTTD +FG E+V YE P+P GIHR+VF LFKQ+ RQAV P +R+ FNT +F+ L PVAAV+FNAQRETA RRR Sbjct: 6 EPLIVGRVIGDVLEMFNPSVTMRVTFNSNTIVSNGHELAPSLLLSKPRVEIGGQDLRSFFTLIMMDPDAPSPSNPYMREYLHWMVTDIPGTTDASFGREIVRYETPKPVAGIHRYVFALFKQRGRQAVKAAPETRECFNTNAFSSYFGLSQPVAAVYFNAQRETAPRRR 174
BLAST of Phvul.005G124600.1 vs. DB:Swiss
Match: FT_ARATH (Protein FLOWERING LOCUS T OS=Arabidopsis thaliana OX=3702 GN=FT PE=1 SV=2) HSP 1 Score: 208.379 bits (529), Expect = 2.853e-68 Identity = 100/176 (56.82%), Postives = 129/176 (73.30%), Query Frame = 1 Query: 1 MAMNMISTDPLVIGRVIGDVVDPFTTTLKITVSYNNKQVYNGHEFFPSSVTTKPKVQIRGGDMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDTTFGNEVVNYEIPRPNIGIHRFVFLLFKQKCRQAVMKVPSSRDLFNTRSFAEENDLGLPVAAVFFNAQRETAARRR 528 M++N+ DPL++ RV+GDV+DPF ++ + V+Y ++V NG + PS V KP+V+I G D+R+F+TLVM DPDVP PS+P+LRE+LHW+VTDIP TT TTFGNE+V YE P P GIHR VF+LF+Q RQ V P R FNTR FAE +LGLPVAAVF+N QRE+ R Sbjct: 1 MSINI--RDPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLDLRPSQVQNKPRVEIGGEDLRNFYTLVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVCYENPSPTAGIHRVVFILFRQLGRQTVY-APGWRQNFNTREFAEIYNLGLPVAAVFYNCQRESGCGGR 173
BLAST of Phvul.005G124600.1 vs. DB:Swiss
Match: HD3A_ORYSJ (Protein HEADING DATE 3A OS=Oryza sativa subsp. japonica OX=39947 GN=HD3A PE=1 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 1.933e-67 Identity = 100/176 (56.82%), Postives = 125/176 (71.02%), Query Frame = 1 Query: 1 MAMNMISTDPLVIGRVIGDVVDPFTTTLKITVSYNNKQVYNGHEFFPSSVTTKPKVQIRGGDMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDTTFGNEVVNYEIPRPNIGIHRFVFLLFKQKCRQAVMKVPSSRDLFNTRSFAEENDLGLPVAAVFFNAQRETAARRR 528 MA + DPLV+GRV+GDV+D F + + V+Y +K V NG E PS VT +P+V++ G DMR+F+TLVM DPD P PSDP LRE+LHW+VTDIPGTT +FG EV+ YE PRP +GIHR VF+LF+Q RQ V P R FNT+ FAE +LG PVAAV+FN QRE + R Sbjct: 1 MAGSGRDRDPLVVGRVVGDVLDAFVRSTNLKVTYGSKTVSNGCELKPSMVTHQPRVEVGGNDMRTFYTLVMVDPDAPSPSDPNLREYLHWLVTDIPGTTAASFGQEVMCYESPRPTMGIHRLVFVLFQQLGRQTVY-APGWRQNFNTKDFAELYNLGSPVAAVYFNCQREAGSGGR 175 The following BLAST results are available for this feature:
BLAST of Phvul.005G124600.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.005G124600.1_Pv_G19833_v2.1 >Phvul.005G124600.1_Pv_G19833_v2.1 ID=Phvul.005G124600.1_Pv_G19833_v2.1; Name=Phvul.005G124600.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=177bpback to top mRNA from alignment at Chr05:36162995..36164412+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.005G124600.1_Pv_G19833_v2.1 ID=Phvul.005G124600.1_Pv_G19833_v2.1; Name=Phvul.005G124600.1; organism=Phaseolus vulgaris; type=mRNA; length=1418bp; location=Sequence derived from: Chr05:36162995..36164412+ (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr05:36162995..36164412+ >Phvul.005G124600.1_Pv_G19833_v2.1 ID=Phvul.005G124600.1_Pv_G19833_v2.1; Name=Phvul.005G124600.1; organism=Phaseolus vulgaris; type=CDS; length=531bp; location=Sequence derived from: Chr05:36162995..36164412+ (Phaseolus vulgarisback to top |