Phvul.006G086200.1

Transcript Overview
NamePhvul.006G086200.1
Unique NamePhvul.006G086200.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr06supercontigChr06:19823947..19825451 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvR259Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL497Pisum sativum Cameor genome v1aPisum sativum
pspvL503Pisum sativum Cameor genome v1aPisum sativum
pvvuR536Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR558Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccpvL0040Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0825Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0199Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0486Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0716Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0960Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1385Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL215Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspvL817Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR501Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR525Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR550Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR558Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR544Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR552Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR483Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR509Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR470Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR495Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR623Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR632Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR648Vicia sativa cv. Studenica genome v1.0Vicia sativa
avjpvL133Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL793Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL136Cicer arietinum
carpvL607Cicer arietinum
ccapvL059Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL529Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR596Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR617Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR611Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR643Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR599Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR620Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvpvfR501Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR516Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR494Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR514Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vfaba.Hedin2.R1.2g067920.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Psat05G0411100-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vfaba.Tiffany.R1.2g055280.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-KK1_020238Cajanus cajan Asha genome v1.0Cajanus cajan
Vum_05G01283.1Vigna umbellata FF25 genome v1.0Vigna umbellata
jg52177.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-XM_014662548.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
LR48_mrnaVigan09g145900Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigun06g096000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
XM_058931792.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vigun06g096000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
evm.model.Chr06.1097.1.6211316eVigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-TanjilR_01493Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Cc_v2.0_00482.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Va09G045110.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigan.05G158600.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Psat5g142640.1Pisum sativum Cameor genome v1aPisum sativum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr06.1001295Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.006G086200Phvul.006G086200_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G086200.1Phvul.006G086200.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.006G086200.1_Pv_G19833_v2.1Phvul.006G086200.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G086200.1.v2.1.five_prime_UTR.2Phvul.006G086200.1.v2.1.five_prime_UTR.2_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR
Phvul.006G086200.1.v2.1.five_prime_UTR.1Phvul.006G086200.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G086200.1.v2.1.CDS.1Phvul.006G086200.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G086200.1.v2.1.three_prime_UTR.1Phvul.006G086200.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Phvul.006G086200.1 vs.
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011043Galactose oxidase/kelch, beta-propellerSUPERFAMILY50965Galactose oxidase, central domaincoord: 49..268

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.006G086200.1_Pv_G19833_v2.1

>Phvul.006G086200.1_Pv_G19833_v2.1 ID=Phvul.006G086200.1_Pv_G19833_v2.1; Name=Phvul.006G086200.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=371bp
MSIMKNGSYQTVGSTSLDTSVGLVCHYEFENGSSQFVFMDVESGNRASLN
HWLCFSTENFVQALAFCNGLILLSGFSEDQLCYHVFNPLTKHNFTIPQAR
IQDNISRVGLAFDGCQFEIVLIEAGSSPSNGLKLHVFSSDTGKWRSQNPS
NITAPSLPEYELEEPGTGTPPLYSNGSIHWEIGGQLVVYQVQRSHCELYE
LPNNSKDWSWEPTLTFRSRLCESGGRIYYCYTDFDGFHIWKLLNEHEHES
FLYYWDYKTFPWRLVHSVEPEVFMSKLQNFCDNFYDWEPFKIAPIAFSER
AQIIYLQLPGSVVSYNLDTGTLASICTYSYPGMNFNCCSFFSSTSHNALS
DTNGEMELNIPIAEIEKLAL*
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mRNA from alignment at Chr06:19823947..19825451-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.006G086200.1_Pv_G19833_v2.1 ID=Phvul.006G086200.1_Pv_G19833_v2.1; Name=Phvul.006G086200.1; organism=Phaseolus vulgaris; type=mRNA; length=1505bp; location=Sequence derived from: Chr06:19823947..19825451- (Phaseolus vulgaris
CTCATTTCTAGGGAGACTTTACTGCTTGTTTCCATGTAACTTCTGAGAAA
GCTGTTTCCAAGAAAGACCACAAGAAGTTTCTTTCAAGCTTCTAAATTGT
ACGAAGTCAACCCAATTTGGATAGTCATGATGAATGATTCTTCCTTCTTA
AAAGCCTTCCTTTTCAACAAAATTCCAATATCCTAATCCAAGTCCCAGAA
ATCAGATTCATCTTTTTGTTCACAGGTCCTGAGAAAACGTGGTGGGAAGC
ACCAGTTTGCATAGATGAGTATTATGAAAAATGGAAGTTACCAAACTGTT
GGCTCAACCTCACTAGACACTAGTGTTGGTCTTGTTTGCCACTATGAATT
TGAAAATGGGTCATCTCAGTTTGTGTTCATGGATGTTGAAAGTGGAAATA
GAGCTTCCCTTAACCATTGGCTCTGCTTCTCCACTGAAAACTTTGTGCAG
GCCCTTGCTTTTTGCAATGGCTTAATTCTCTTGTCAGGTTTTAGTGAGGA
CCAACTCTGTTATCATGTGTTCAACCCCCTCACCAAGCACAATTTCACAA
TCCCTCAAGCTAGAATCCAAGATAATATTAGCAGAGTTGGATTAGCCTTT
GATGGATGCCAATTTGAGATTGTGCTGATTGAAGCAGGTTCTTCACCATC
CAATGGACTAAAACTGCATGTTTTCTCTTCTGACACTGGCAAATGGAGGA
GCCAAAACCCCAGCAACATAACTGCTCCTTCTTTGCCAGAATATGAGTTG
GAAGAACCTGGCACTGGCACACCTCCTCTTTACTCAAATGGGTCAATTCA
TTGGGAAATAGGTGGACAGTTGGTGGTGTATCAAGTTCAGAGAAGCCATT
GTGAGCTATATGAACTACCAAACAATTCTAAGGATTGGTCTTGGGAGCCG
ACATTAACTTTTCGCAGTCGTTTGTGTGAATCAGGAGGCAGAATTTACTA
TTGCTACACTGATTTTGATGGCTTTCACATTTGGAAACTTCTGAATGAGC
ATGAGCATGAATCATTCCTGTATTATTGGGATTACAAAACGTTTCCTTGG
AGGCTAGTCCACAGTGTGGAGCCTGAAGTGTTCATGTCTAAGCTCCAAAA
CTTCTGTGACAACTTCTATGATTGGGAGCCTTTCAAGATTGCACCCATTG
CCTTCAGTGAACGAGCACAAATCATATATTTGCAGCTTCCAGGATCTGTT
GTTTCTTACAATCTTGATACAGGAACTCTGGCATCAATCTGCACCTACTC
TTATCCAGGGATGAACTTCAATTGCTGCTCATTCTTTTCTTCAACTTCTC
ACAATGCACTGAGTGACACCAATGGAGAAATGGAGCTCAATATACCCATT
GCAGAGATTGAGAAGTTAGCCCTCTAAATTACATTTATGTTCAGTGATGA
CTATGGTGTTTAGCTGACATTAAACTTCATTATGCTACTAATGGTTTTCA
TGTTTTGCTTGGTAAACAATTATGTGAAAGTATGTATGTATTATGTAGAA
TAACA
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Coding sequence (CDS) from alignment at Chr06:19823947..19825451-

>Phvul.006G086200.1_Pv_G19833_v2.1 ID=Phvul.006G086200.1_Pv_G19833_v2.1; Name=Phvul.006G086200.1; organism=Phaseolus vulgaris; type=CDS; length=1113bp; location=Sequence derived from: Chr06:19823947..19825451- (Phaseolus vulgaris
ATGAGTATTATGAAAAATGGAAGTTACCAAACTGTTGGCTCAACCTCACT
AGACACTAGTGTTGGTCTTGTTTGCCACTATGAATTTGAAAATGGGTCAT
CTCAGTTTGTGTTCATGGATGTTGAAAGTGGAAATAGAGCTTCCCTTAAC
CATTGGCTCTGCTTCTCCACTGAAAACTTTGTGCAGGCCCTTGCTTTTTG
CAATGGCTTAATTCTCTTGTCAGGTTTTAGTGAGGACCAACTCTGTTATC
ATGTGTTCAACCCCCTCACCAAGCACAATTTCACAATCCCTCAAGCTAGA
ATCCAAGATAATATTAGCAGAGTTGGATTAGCCTTTGATGGATGCCAATT
TGAGATTGTGCTGATTGAAGCAGGTTCTTCACCATCCAATGGACTAAAAC
TGCATGTTTTCTCTTCTGACACTGGCAAATGGAGGAGCCAAAACCCCAGC
AACATAACTGCTCCTTCTTTGCCAGAATATGAGTTGGAAGAACCTGGCAC
TGGCACACCTCCTCTTTACTCAAATGGGTCAATTCATTGGGAAATAGGTG
GACAGTTGGTGGTGTATCAAGTTCAGAGAAGCCATTGTGAGCTATATGAA
CTACCAAACAATTCTAAGGATTGGTCTTGGGAGCCGACATTAACTTTTCG
CAGTCGTTTGTGTGAATCAGGAGGCAGAATTTACTATTGCTACACTGATT
TTGATGGCTTTCACATTTGGAAACTTCTGAATGAGCATGAGCATGAATCA
TTCCTGTATTATTGGGATTACAAAACGTTTCCTTGGAGGCTAGTCCACAG
TGTGGAGCCTGAAGTGTTCATGTCTAAGCTCCAAAACTTCTGTGACAACT
TCTATGATTGGGAGCCTTTCAAGATTGCACCCATTGCCTTCAGTGAACGA
GCACAAATCATATATTTGCAGCTTCCAGGATCTGTTGTTTCTTACAATCT
TGATACAGGAACTCTGGCATCAATCTGCACCTACTCTTATCCAGGGATGA
ACTTCAATTGCTGCTCATTCTTTTCTTCAACTTCTCACAATGCACTGAGT
GACACCAATGGAGAAATGGAGCTCAATATACCCATTGCAGAGATTGAGAA
GTTAGCCCTCTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR011043Gal_Oxase/kelch_b-propeller