Phvul.006G087800.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.006G087800.1 vs. DB:Swiss
Match: P2B15_ARATH (F-box protein PP2-B15 OS=Arabidopsis thaliana OX=3702 GN=PP2B15 PE=2 SV=2) HSP 1 Score: 218.779 bits (556), Expect = 2.288e-69 Identity = 130/283 (45.94%), Postives = 164/283 (57.95%), Query Frame = 1 Query: 7 VLPYDCFAHILSFTSPQDVCRSSLVSSIVQSMADSDAVWEKFLPSNYHQIXXXXXXXXXXXXXKKHLFSMLCNPRPIDDGNKIFSIEKRSGKICYLLSARQLSIAWGNSPLYWSWKPTQGSRFEESAELRTIWWLEIKGSINSGMLSANTLYGAYLKVKTADRAYGLDLLPSEVSVEVG----KQRSLGTVCIHSCRKTNTTTSFPFPR-----------------KLEDEEWSEIELGSFYTHY----SNEEVRMCLKEVKGAHLKGGLIVDGIEIRPKHLE 780 +LP C A ILSFT+P D S+ VSS+ + DSD VWEKFLP++Y ++SR SSKK L+ LC ID+G KIF IEK SGKI Y+LS+R LSI W + YWSW P SRF E +L WLEI G I +G LS NT YGAYL +K RAYGLDL+P+E S++VG K +S C+ + +K F R ++ D+ W EIELG F T ++EV M L EVKG LKGG+ +DGIE+RPK L+ Sbjct: 2 MLPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVISRSTDPHRIFSSKKELYRCLCESILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWSWSPRSDSRFSEGVQLIMTDWLEIIGKIQTGALSPNTNYGAYLIMKVTSRAYGLDLVPAETSIKVGNGEKKIKSTYLSCLDN-KKQQMERVFYGQREQRMATHEVVRSHRREPEVRDDGWMEIELGEFETGSGEGDDDKEVVMSLTEVKGYQLKGGIAIDGIEVRPKPLK 283
BLAST of Phvul.006G087800.1 vs. DB:Swiss
Match: VBF_ARATH (F-box protein VBF OS=Arabidopsis thaliana OX=3702 GN=VBF PE=1 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 2.307e-61 Identity = 125/281 (44.48%), Postives = 161/281 (57.30%), Query Frame = 1 Query: 1 MEVLPYDCFAHILSFTSPQDVCRSSLVSSIVQSMADSDAVWEKFLPSNYHQIXXXXXXXXXXXXXKKHLFSMLCNPRPIDDGNKIFSIEKRSGKICYLLSARQLSIAWGNSPLYWSWKPTQGSRFEESAELRTIWWLEIKGSINSGMLSANTLYGAYLKVKTADRAYGLDLLPSEVSVEVGK---QRSLGTVCIHSCRKTNTTTSFPFPR--------------------KLEDEEWSEIELGSFYTHYS-NEEVRMCLKEVKGAHLKGGLIVDGIEIRPK 771 M +LP C A+IL+FTSP D SS VSS+ + DSD VWEKFLPS+Y ++S+ ++ SSKK ++ LC+ ID+ K+F I K SGKI Y+LSAR +SI + YWSW SRF ESAEL LEI+G I + +LSANT YGAYL VK AYGLDL+P+E S++ +S +C +K F R K D+ W EIELG F T ++EV M L EVKG LKGG+++DGIE+RPK Sbjct: 1 MMMLPEACIANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSDYKSLISQSTDHHWNISSKKEIYRCLCDSLLIDNARKLFKINKFSGKISYVLSARDISITHSDHASYWSWSNVSDSRFSESAELIITDRLEIEGKIQTRVLSANTRYGAYLIVKVTKGAYGLDLVPAETSIKSKNGQISKSATYLCCLDEKKQQMKRLFYGNREERMAMTVEAVGGDGKRREPKCRDDGWMEIELGEFETREGEDDEVNMTLTEVKGYQLKGGILIDGIEVRPK 281
BLAST of Phvul.006G087800.1 vs. DB:Swiss
Match: P2B13_ARATH (F-box protein PP2-B13 OS=Arabidopsis thaliana OX=3702 GN=PP2B13 PE=2 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 3.011e-60 Identity = 123/280 (43.93%), Postives = 159/280 (56.79%), Query Frame = 1 Query: 1 MEVLPYDCFAHILSFTSPQDVCRSSLVSSIVQSMADSDAVWEKFLPSNYHQIXXXXXXXXXXXXXKKHLFSMLCNPRPIDDGNKIFSIEKRSGKICYLLSARQLSIAWGNSPLYWSWKPTQGSRFEESAELRTIWWLEIKGSINSGMLSANTLYGAYLKVKTADRAYGLDLLPSEVSVEVG---KQRSLGTVCIHSCRKTNTTTSFPFPR--------------------KLEDEEWSEIELGSFYTHYS-NEEVRMCLKEVKGAHLKGGLIVDGIEIRP 768 M +LP C A+IL+FTSP D SS VSS+ + DSD VWEKFLPS+Y ++S+ SSKK ++ LC+ ID+ K+F I K SGKI Y+LSAR +SI + + Y SW SRF ESAEL T LEIKG I + +LS NT YGAYL +K + AYGLDL+P+E SV+ ++ +C +K F R K D+ W EIELG F T ++EV M L EVKG LKGG+++DGIE+RP Sbjct: 1 MMMLPEACVANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSHYKSLISQSTDHHRIFSSKKEIYRCLCDSLLIDNARKLFKINKFSGKISYILSARDISITYSDHASYCSWSNVSDSRFSESAELITTDRLEIKGKIQTTVLSPNTKYGAYLIMKVTNGAYGLDLVPAETSVKSKNGQNNKNTTYLCCLDEKKQQMKRLFYGNREERMAMTVEAVGGDGKRREPKARDDGWLEIELGEFVTREGEDDEVNMSLTEVKGYQLKGGIVIDGIEVRP 280
BLAST of Phvul.006G087800.1 vs. DB:Swiss
Match: P2B12_ARATH (Putative F-box protein PP2-B12 OS=Arabidopsis thaliana OX=3702 GN=PP2B12 PE=4 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 2.165e-57 Identity = 113/261 (43.30%), Postives = 154/261 (59.00%), Query Frame = 1 Query: 10 LPYDCFAHILSFTSPQDVCRSSLVSSIVQSMADSDAVWEKFLPSNYHQIXXXXXXXXXXXXXKKHLFSMLC-NPRPIDDGNKIFSIEKRSGKICYLLSARQLSIAWGNSPLYWSWKPTQGSRFEESAELRTIWWLEIKGSINSGMLSANTLYGAYLKVKTADR-AYGLDLLPSEVSVEVGKQRSLGTVCIHSCR---KTNTTTSFPFPRKLEDEEWSEIELGSFYTHYSNEEVRMCLKEVKGAHLKGGLIVDGIEIRPKHL 777 LP +C A ++SFTSP D CR S VS +++S ADS+ WE+FLPS+Y ++ +S S S K LF C +P I+DG F +EKRSGK C++LSAR+L I W +SP +W W SRFEE A L + W EI+G I++ +LS T Y AYL K + ++G + LP EVS RS T ++ R K+ T S ++ W EIELG +Y + +EE+ M + E + KGG+IV GIEIRPK L Sbjct: 6 LPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRM----YIDNSLSRFSNKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSIPDSRFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFKEQEMGSFGFESLPLEVSF-----RSTRTEVYNNRRVFLKSGTQES-------REDGWLEIELGEYYVGFDDEEIEMSVLETREGGWKGGIIVQGIEIRPKEL 250
BLAST of Phvul.006G087800.1 vs. DB:Swiss
Match: P2B10_ARATH (F-box protein PP2-B10 OS=Arabidopsis thaliana OX=3702 GN=PP2B10 PE=1 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 1.767e-56 Identity = 105/262 (40.08%), Postives = 146/262 (55.73%), Query Frame = 1 Query: 10 LPYDCFAHILSFTSPQDVCRSSLVSSIVQSMADSDAVWEKFLPSNYHQIXXXXXXXXXXXXXKKHLFSMLCN-PRPIDDGNKIFSIEKRSGKICYLLSARQLSIAWGNSPLYWSWKPTQGSRFEESAELRTIWWLEIKGSINSGMLSANTLYGAYLKVKTADRAYGLDLLPSEVSVE-VGKQRSLGTVCI-HSCRKTNTTTSFPFPRKLEDEEWSEIELGSFYTH---YSNEEVRMCLKEVKGAHLKGGLIVDGIEIRPKHL 777 P DC ++I+SFT+P+D C ++ VS +S SD +WEKFLP++Y ++ S KK L+ LCN P DD K +EK SGK C +LSA LSI WG++P YW W P SRFE+ A+LR + W EI+G N+ +LS T Y AY+ K D+ YG + E +V VG++ S +C + R+ P K ++ W EIELG F+ N+E+ M E K + K GLI+ GIEIRP + Sbjct: 17 FPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSRVFSS----KKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIPESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFKGVDKCYGFQNVAIEAAVGVVGQEPSRRLICFSEAIRRGRRNVVKP---KQREDGWMEIELGEFFNDGGIMDNDEIEMSALETKQLNRKCGLIIQGIEIRPAKI 271
BLAST of Phvul.006G087800.1 vs. DB:Swiss
Match: P2B11_ARATH (F-box protein PP2-B11 OS=Arabidopsis thaliana OX=3702 GN=PP2B11 PE=1 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 7.216e-53 Identity = 108/260 (41.54%), Postives = 144/260 (55.38%), Query Frame = 1 Query: 1 MEVLPYDCFAHILSFTSPQDVCRSSLVSSIVQSMADSDAVWEKFLPSNYHQIXXXXXXXXXXXXXKKHLFSMLCNPRPIDDGNKIFSIEKRSGKICYLLSARQLSIAWGNSPLYWSWKPTQGSRFEESAELRTIWWLEIKGSINSGMLSANTLYGAYLKVKTADRAYGLDLLPSEVSVEVGKQRSLGTVC---IHSCRKTNTTTSFPFPRKLEDEEWSEIELGSFYTHYSN-EEVRMCLKEVKGAHLKGGLIVDGIEIRP 768 M LP DC A ILS T+P DVCR S VSSI +S A SD VW FLP+++ + F + + + K+ FS++ NP I+ FS+E++SG CY+++AR L+I WG+ YW W +RF E AEL +WWLEI G IN +LS +TLY AY K YG P E S+ + S V + S + + P L + W E+ELG F+ + E+ M LKE KG + K GLIV GIEIRP Sbjct: 1 MNNLPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADF---PAGFAAPAGLPTRKQLFFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHWISLPNTRFGEVAELIMVWWLEITGKINITLLSDDTLYAAYFVFKWNHSPYGFR-QPVETSLVLADTESTDNVVQPSMISLMQDSGGEEGQSP-VLRRDGWYEVELGQFFKRRGDLGEIEMSLKETKGPYEKKGLIVYGIEIRP 255
BLAST of Phvul.006G087800.1 vs. DB:Swiss
Match: FB95_ARATH (F-box protein At2g02240 OS=Arabidopsis thaliana OX=3702 GN=At2g02240 PE=2 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 7.791e-53 Identity = 110/264 (41.67%), Postives = 147/264 (55.68%), Query Frame = 1 Query: 1 MEVLPYDCFAHILSFTSPQDVCRSSLVSSIVQSMADSDAVWEKFLPSNYHQIXXXXXXXXXXXXXKKHLFSMLC-NPRPIDDGNKIFSIEKRSGKICYLLSARQLSIAWGNSPLYWSWKPTQGSRFEESAELRTIWWLEIKGSINSGMLSANTLYGAYLKVKTADRAYGLDLLPSEVSVEVGKQRS-------LGTVCIHSCRKTNTTTSFPFPRKLEDEEWSEIELGSFYTHYSNEEVRMCLKEVKGAHLKGGLIVDGIEIRP 768 +VLP DC ++I+SFTSP+D C ++ VS +S SD VW+KFLP Y +VSR + KK L+ LC NP I+DG K F +EK SGK C +LS+++L I WG+SP YW W SRF + AEL + W EI+G ++ +LS T Y AY+ KT DR GL LP EV + + Q S +G R+T T P + ED W E ELG F+ +E+ + E+K K GLI+ GIE RP Sbjct: 61 FDVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSRVFAS----KKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISIPESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPVEVGLGLVGQESSKRFIYFIGPRDRRGRRETRDVTK---PDQRED-GWMEAELGEFFNEERCDEIEFSVIEIKSPSWKSGLIIQGIEFRP 316
BLAST of Phvul.006G087800.1 vs. DB:Swiss
Match: PP2B1_ARATH (F-box protein PP2-B1 OS=Arabidopsis thaliana OX=3702 GN=PP2B1 PE=1 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 4.114e-51 Identity = 110/307 (35.83%), Postives = 157/307 (51.14%), Query Frame = 1 Query: 1 MEVLPYDCFAHILSFTSPQDVCRSSLVSSIVQSMADSDAVWEKFLPSNYHQIXXXXXXXXXXXXXKKHLF-SMLCNPRPIDDGNKIFSIEKRSGKICYLLSARQLSIAWGNSPLYWSWKPTQGSRFEESAELRTIWWLEIKGSINSGMLSANTLYGAYLKVKTAD-RAYGLDLLPSEVSVE-VGKQRSLGTVCIHSCRKTN--------------TTTSFPFPR--------------------------KLEDEEWSEIELGSFYTHY------SNEEVRMCLKEVKGAHLKGGLIVDGIEIRPKH 774 + LP DC + ++S TSP+D C + VS V+S A SD VWE FLPS Y +V + + KK +F S+ N +++G K F +EK SGK CY+LSA +L+I WG+SP YW W S+FE+ AELR + W E++G I+ GMLS T Y Y+ KTA+ R+YG DL+P E V VGK + +V S + + +F R K + WSE+ELG FY + ++E+ + + E + + K GLI+ GIEIRP+ Sbjct: 32 FDALPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVLQSANHLS----KKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWITVPESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRSYGFDLVPVEAGVGFVGKVATKKSVYFESGNADSRSATSHYSGISYAMVSRAFRMRRPWMQVQREEEEEVEGERERGMNVVGPKERVDGWSEVELGKFYINNGGCGDDGSDEIEISIMETQNGNWKSGLIIQGIEIRPER 334
BLAST of Phvul.006G087800.1 vs. DB:Swiss
Match: PP2B2_ARATH (Putative F-box protein PP2-B2 OS=Arabidopsis thaliana OX=3702 GN=PP2B2 PE=4 SV=2) HSP 1 Score: 166.777 bits (421), Expect = 7.985e-49 Identity = 100/259 (38.61%), Postives = 145/259 (55.98%), Query Frame = 1 Query: 10 LPYDCFAHILSFTSPQDVCRSSLVSSIVQSMADSDAVWEKFLPSNYHQIXXXXXXXXXXXXXKKHLFSMLC-NPRPIDDGNKIFSIEKRSGKICYLLSARQ-LSIAWGNSPLYWSWKPTQGSRFEESAELRTIWWLEIKGSINSGMLSANTLYGAYLKVKTADRAYGLDLLPSEVSVE-VGK---QRSLGTVCIHSCRKTNTTTSFPFPRKLEDEEWSEIELGSFYTHYSNEEVRMCLKEVKGAHLKGGLIVDGIEIRP 768 LP DC ++I+SFTSP+D C ++ VS +S +SD+VW+KFLPS+Y +V S KK L+ +C NP ++DG K F +EK +GK C++LS ++ + I W ++P YW W +RFEE EL + W E++G +N+ LS T Y AY+ KT + L +P E +V VG+ QR + V R+ T P K +D W E ELG F+ + V + E+K + K GLI+ GIE RP Sbjct: 50 LPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSRVFSS----KKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWISIPEARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVPVEATVGLVGQESSQRHIYFVGPSDQRRDRETRDVTRPTKRKD-GWMEAELGQFFNESGCDVVDTSILEIKTPYWKRGLIIQGIEFRP 303
BLAST of Phvul.006G087800.1 vs. DB:Swiss
Match: PP2B8_ARATH (Putative F-box protein PP2-B8 OS=Arabidopsis thaliana OX=3702 GN=PP2B8 PE=4 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 1.517e-45 Identity = 103/272 (37.87%), Postives = 146/272 (53.68%), Query Frame = 1 Query: 1 MEVLPYDCFAHILSFTSPQDVCRSSLVSSIVQSMADSDAVWEKFLPSNYHQIXXXXXXXXXXXXXKKHLFSMLCNPRP-IDDGNKIFSIEKRSGKICYLLSARQLSIAWGNSPLYWSWKPTQGSRFEESAELRTIWWLEIKGSINSGMLSANTLYGAYLKVKTADRAYGLDLLPSEVSVEVGKQRSLGTVCIHSC---------RKTNTTTSFPFPRKLEDEEWSEIELGSFYTH---YSNEEVRMCLKEVKGAHLKGGLIVDGIEIRPKHL 777 ++ LP +C + I+SFTSPQD C + VS S SD VWEKF+P Y ++S+ + F KK L+ LC+ IDDG K IEK + K C ++SA L+IAWGNSP W W P +RFE AEL + EI+G INS ++S T Y AY+ K + YG + + EV V V Q + + C R+ + + P + +D W EI++G F+ +++E+ M E K H K GLI+ GIEIRP ++ Sbjct: 36 LDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSRAFKFLS--KKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPDPQARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVVVGVVGQDLEESCRRYICFDETMDEQFRRRDRGKNLVKPERRKD-GWMEIKIGEFFNEGGLLNDDEIEMVALEAKQRHWKRGLIIQGIEIRPTNI 304 The following BLAST results are available for this feature:
BLAST of Phvul.006G087800.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.006G087800.1_Pv_G19833_v2.1 >Phvul.006G087800.1_Pv_G19833_v2.1 ID=Phvul.006G087800.1_Pv_G19833_v2.1; Name=Phvul.006G087800.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=268bpback to top mRNA from alignment at Chr06:19982244..19984992+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.006G087800.1_Pv_G19833_v2.1 ID=Phvul.006G087800.1_Pv_G19833_v2.1; Name=Phvul.006G087800.1; organism=Phaseolus vulgaris; type=mRNA; length=2749bp; location=Sequence derived from: Chr06:19982244..19984992+ (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr06:19982244..19984992+ >Phvul.006G087800.1_Pv_G19833_v2.1 ID=Phvul.006G087800.1_Pv_G19833_v2.1; Name=Phvul.006G087800.1; organism=Phaseolus vulgaris; type=CDS; length=804bp; location=Sequence derived from: Chr06:19982244..19984992+ (Phaseolus vulgarisback to top |