Phvul.006G088800.1

Transcript Overview
NamePhvul.006G088800.1
Unique NamePhvul.006G088800.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr06supercontigChr06:20053409..20055713 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvR253Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL233Pisum sativum Cameor genome v1aPisum sativum
pspvL630Pisum sativum Cameor genome v1aPisum sativum
pvvuR536Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR555Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0295Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL391Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crpvL392Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL235Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capvL360Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0730Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0911Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0485Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0717Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0781Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0956Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0959Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL215Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspvL437Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR510Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR532Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR572Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR582Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR563Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR573Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR483Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR523Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR470Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR488Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR649Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR663Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL217Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL328Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL133Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL403Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL225Cicer arietinum
carpvL338Cicer arietinum
ccapvL290Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL381Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR581Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR617Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR584Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR631Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR620Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR640Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR613Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR627Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR640Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR480Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR501Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR510Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR494Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR512Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vfaba.Hedin2.R1.3g088560.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Ca_07981.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Va09G045630.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-TanjilR_17599Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_22601Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-KK1_006975Cajanus cajan Asha genome v1.0Cajanus cajan
XM_058923296.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
evm.model.Chr07.1376Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-XM_014656580.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
evm.model.Chr06.1117Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vum_08G01396.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Cc_v2.0_03917.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Cc_v2.0_08300.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-XM_004495635.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigun06g099000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun06g099000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-TanjilR_15607Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Cr_09197.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigun07g143600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vum_05G01261.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Psat03G0056200-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigan.05G155200.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigun07g143600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigst.08G135600.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vigst.05G123100.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vfaba.Tiffany.R1.3g072600.1Vicia faba cv. Tiffany genome v1.0Vicia faba
XM_058882542.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
rna-TanjilR_01053Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Ca_03657Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Cr_08189.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigst.04G240700.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-KK1_010439Cajanus cajan Asha genome v1.0Cajanus cajan
Vigan.08G174700.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Va02G051900.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Psat06G0409100-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-XM_014662183.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
jg3282.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Ca_01138Cicer arietinum CDC Frontier genome v1.0Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr01.1322Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Phvul.007G197900.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
PvulFLAVERTChr06.1001305Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
RPL18Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.006G088800Phvul.006G088800_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G088800.1Phvul.006G088800.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.006G088800.1_Pv_G19833_v2.1Phvul.006G088800.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G088800.1.v2.1.CDS.5Phvul.006G088800.1.v2.1.CDS.5_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.006G088800.1.v2.1.CDS.4Phvul.006G088800.1.v2.1.CDS.4_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.006G088800.1.v2.1.CDS.3Phvul.006G088800.1.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.006G088800.1.v2.1.CDS.2Phvul.006G088800.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.006G088800.1.v2.1.CDS.1Phvul.006G088800.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G088800.1.v2.1.three_prime_UTR.1Phvul.006G088800.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G088800.1.v2.1.five_prime_UTR.1Phvul.006G088800.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


Homology
BLAST of Phvul.006G088800.1 vs. DB:Swiss
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2)

HSP 1 Score: 335.109 bits (858), Expect = 7.029e-118
Identity = 161/187 (86.10%), Postives = 176/187 (94.12%), Query Frame = 1
Query:    1 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIRYTKGKEDKIAVVVGTITDDIRVYEVPQLKITALKFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHSKPYVRSKGRKFEKARGRRNSRGFRV 561
            MGIDL AGGKSKKTKRTAPKS+D+YLKL VKLYRFLVRRT S FN VILKRLFMSKVNK PLSLSRL+ +  GKEDKIAV+VGTITDD+RV+E+P +K+TAL+FTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSHSKPYVR+KGRKFEKARG+R SRGF+V
Sbjct:    1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRKSRGFKV 187          
BLAST of Phvul.006G088800.1 vs. DB:Swiss
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 2.082e-117
Identity = 160/187 (85.56%), Postives = 178/187 (95.19%), Query Frame = 1
Query:    1 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIRYTKGKEDKIAVVVGTITDDIRVYEVPQLKITALKFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHSKPYVRSKGRKFEKARGRRNSRGFRV 561
            MGIDL AGGKSKKTKRTAPKS+D+YLKLLVKLYRFLVRR+ SNFNAVILKRLFMSKVNK PLSLSRL+ +  GK+DKIAV+VGTITDD+RV+E+P +K+TAL+FTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHS++KPYVR KGRKFEKARG+R SRGF+V
Sbjct:    1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKRKSRGFKV 187          
BLAST of Phvul.006G088800.1 vs. DB:Swiss
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 3.700e-114
Identity = 161/184 (87.50%), Postives = 173/184 (94.02%), Query Frame = 1
Query:   10 DLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIRYTKGKEDKIAVVVGTITDDIRVYEVPQLKITALKFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHSKPYVRSKGRKFEKARGRRNSRGFRV 561
            DLKAGGK+KKTKRT+PKSNDIYLKLLVKLYRFLVRRT SNFNAVILKRLFMSKVN+PPLSLSRLI+Y +GKE KI VVVG +TDDIRVY+VP +K+TALKFTE ARARI+KAGGECLTFDQLALR PL  +TVLLRGPKNAREAVKHFGPAPGVPHSH+KPYVRSKGRKFEKARGRR SRGFRV
Sbjct:    1 DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 183          
BLAST of Phvul.006G088800.1 vs. DB:Swiss
Match: RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A PE=3 SV=3)

HSP 1 Score: 296.975 bits (759), Expect = 7.372e-103
Identity = 146/188 (77.66%), Postives = 162/188 (86.17%), Query Frame = 1
Query:    1 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIRYTKGKEDKIAVVVGTITDDIRVYEVPQLKITALKFTERARARIEKAGGECLTFDQLALRAP-LGQNTVLLRGPKNAREAVKHFGPAPGVPHSHSKPYVRSKGRKFEKARGRRNSRGFRV 561
            MGIDL AGGKSKKTKRT PKS+D+YLKLLVK  R+LVRRT S FNAVILKRLFMSKVNK PLSLSRL+RY  GK+ KIAV+VGT+TDD+R+ +VP L +TAL+FTE ARARI KAGGECLTFDQLAL  P   +NTVLLRGPKN REAVKHFGPAPGVPHSH+KPYVR  G+K E ARGRR SRGF+V
Sbjct:    1 MGIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGRRRSRGFKV 188          
BLAST of Phvul.006G088800.1 vs. DB:Swiss
Match: RL18_TIMBA (60S ribosomal protein L18 OS=Timarcha balearica OX=79517 GN=RpL18 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 9.805e-85
Identity = 122/188 (64.89%), Postives = 154/188 (81.91%), Query Frame = 1
Query:    1 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIRYTK--GKEDKIAVVVGTITDDIRVYEVPQLKITALKFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHSKPYVRSKGRKFEKARGRRNSRGFR 558
            MGID+      +K +RT PKS D+YL+LLVKLYR+L RRTG+ FN +ILKRLFMSK+ +PP+SLS+++R+ K  G+E   AV+VGT+TDD R++E+P+L I AL+ T+ ARA I KAGGE +TFDQLALR+P G  TVLL+G +NAREAVKHFGPAPGVPHSH+KP VRSKGRKFE+ARGRR S G++
Sbjct:    1 MGIDINHK-YDRKVRRTEPKSQDVYLRLLVKLYRYLARRTGAKFNKIILKRLFMSKIYRPPISLSKVVRFMKKPGRELLTAVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGEVITFDQLALRSPTGSKTVLLQGKRNAREAVKHFGPAPGVPHSHAKPLVRSKGRKFERARGRRRSCGYK 187          
BLAST of Phvul.006G088800.1 vs. DB:Swiss
Match: RL18_DIACI (60S ribosomal protein L18 OS=Diaphorina citri OX=121845 GN=RpL18 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.280e-82
Identity = 113/188 (60.11%), Postives = 155/188 (82.45%), Query Frame = 1
Query:    1 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIRYTK--GKEDKIAVVVGTITDDIRVYEVPQLKITALKFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHSKPYVRSKGRKFEKARGRRNSRGFR 558
            MG+D+      ++ +RT PKS D+YL+LLVKLYRFL RRT S FN +ILKRLFMSK+N+PP+++S+++R+ K   +E ++AV+VGTI DD R++ +P+L + AL+ T++AR+RI KAGGE +TFDQLALRAP G+NTVL++G +  REA KHFGPAPGVPHSH+K +VRSKGR+FE+ARGRR S+G++
Sbjct:    1 MGVDI-CHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTVCALRVTDKARSRILKAGGEIITFDQLALRAPTGKNTVLMQGKRTGREANKHFGPAPGVPHSHTKAHVRSKGRQFERARGRRTSKGYK 187          
BLAST of Phvul.006G088800.1 vs. DB:Swiss
Match: RL18_LYSTE (60S ribosomal protein L18 OS=Lysiphlebus testaceipes OX=77504 GN=RpL18 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 6.126e-82
Identity = 118/188 (62.77%), Postives = 153/188 (81.38%), Query Frame = 1
Query:    1 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIRYTK--GKEDKIAVVVGTITDDIRVYEVPQLKITALKFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHSKPYVRSKGRKFEKARGRRNSRGFR 558
            MGID+      +K +RT P+S DIYL+LLVK+YRFL RRT S F+ +ILKRLFMS++N PP+SL+R+ R+ K   +++ IAVVVGTITDD R++E+P+LK+ AL+ TE+AR RI KAGGE +TF++LA  +P G  TVL++G +NAREAVKHFGPAPGVPHSH+KP VRSKGRKFE+ARGRR S G++
Sbjct:    1 MGIDINHK-YDRKVRRTEPRSQDIYLRLLVKVYRFLARRTNSKFSRIILKRLFMSRINLPPISLARVCRFMKKESRKNSIAVVVGTITDDARIFEIPKLKVCALRITEKARGRILKAGGEIITFEKLAEISPTGNKTVLMQGRRNAREAVKHFGPAPGVPHSHTKPLVRSKGRKFERARGRRKSCGYK 187          
BLAST of Phvul.006G088800.1 vs. DB:Swiss
Match: RL18_RAT (60S ribosomal protein L18 OS=Rattus norvegicus OX=10116 GN=Rpl18 PE=1 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 3.257e-80
Identity = 117/176 (66.48%), Postives = 142/176 (80.68%), Query Frame = 1
Query:    1 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIRYTK--GKEDKIAVVVGTITDDIRVYEVPQLKITALKFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHSKPYVRSKGRKFE 522
            MG+D++   K +K +R  PKS DIYL+LLVKLYRFL RRT S FN V+LKRLFMS+ N+PPLSLSR+IR  K  G+E+K AVVVGTITDD+R+ EVP+LK+ AL+ + RAR+RI KAGG+ LTFDQLAL +P G+ TVLL GP+  RE  +HFG APG PHSH+KPYVRSKGRKFE
Sbjct:    1 MGVDIRHN-KDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFE 175          
BLAST of Phvul.006G088800.1 vs. DB:Swiss
Match: RL18_IXOSC (60S ribosomal protein L18 OS=Ixodes scapularis OX=6945 GN=RpL18 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 7.991e-80
Identity = 114/176 (64.77%), Postives = 148/176 (84.09%), Query Frame = 1
Query:    1 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIRYTK--GKEDKIAVVVGTITDDIRVYEVPQLKITALKFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHSKPYVRSKGRKFE 522
            MGID+      +K  R  PKS ++YL LLVK+YRFL RR+G+ FN ++LKRLFMS++NKP +SL+R+ R+ K  G+E+ IAVVVGT+TDD+R+Y+VP+L++ AL+ TERARARI KAGGE LTFDQLA++AP G+ TVL++GP+N+REA +HFGPAPGVPHSH+KPYVRSKGRKFE
Sbjct:    1 MGIDINHK-YDRKVVRRRPKSENVYLGLLVKVYRFLARRSGAKFNRIVLKRLFMSRINKPVISLARVTRFMKKPGRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILKAGGEILTFDQLAVQAPKGKGTVLMQGPRNSREACRHFGPAPGVPHSHTKPYVRSKGRKFE 175          
BLAST of Phvul.006G088800.1 vs. DB:Swiss
Match: RL18_MACFA (60S ribosomal protein L18 OS=Macaca fascicularis OX=9541 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 8.627e-80
Identity = 118/176 (67.05%), Postives = 141/176 (80.11%), Query Frame = 1
Query:    1 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIRYTK--GKEDKIAVVVGTITDDIRVYEVPQLKITALKFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHSKPYVRSKGRKFE 522
            MG+D++   K +K +R  PKS DIYL+LLVKLYRFL RRT S FN V+LKRLFMS+ N+PPLSLSR+IR  K  G+E+K AVVVGTITDD+RV EVP+LK+ AL+ T RAR+RI +AGG+ LTFDQLAL +P G  TVLL GP+  RE  +HFG APG PHSH+KPYVRSKGRKFE
Sbjct:    1 MGVDIRHN-KDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFE 175          
The following BLAST results are available for this feature:
BLAST of Phvul.006G088800.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
RL182_ARATH7.029e-11886.1060S ribosomal protein L18-2 OS=Arabidopsis thalian... [more]
RL183_ARATH2.082e-11785.5660S ribosomal protein L18-3 OS=Arabidopsis thalian... [more]
RL18_CICAR3.700e-11487.5060S ribosomal protein L18 (Fragment) OS=Cicer arie... [more]
RL181_ARATH7.372e-10377.66Putative 60S ribosomal protein L18-1 OS=Arabidopsi... [more]
RL18_TIMBA9.805e-8564.8960S ribosomal protein L18 OS=Timarcha balearica OX... [more]
RL18_DIACI1.280e-8260.1160S ribosomal protein L18 OS=Diaphorina citri OX=1... [more]
RL18_LYSTE6.126e-8262.7760S ribosomal protein L18 OS=Lysiphlebus testaceip... [more]
RL18_RAT3.257e-8066.4860S ribosomal protein L18 OS=Rattus norvegicus OX=... [more]
RL18_IXOSC7.991e-8064.7760S ribosomal protein L18 OS=Ixodes scapularis OX=... [more]
RL18_MACFA8.627e-8067.0560S ribosomal protein L18 OS=Macaca fascicularis O... [more]
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021131Ribosomal protein L18e/L15PPFAMPF17135Ribosomal_L18coord: 2..187
e-value: 1.1E-94
score: 315.1
NoneNo IPR availableGENE3D3.100.10.10coord: 1..187
e-value: 1.5E-98
score: 329.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..187
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 152..187
IPR036227Ribosomal L18e/L15P superfamilySUPERFAMILY52080Ribosomal proteins L15p and L18ecoord: 20..139

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.006G088800.1_Pv_G19833_v2.1

>Phvul.006G088800.1_Pv_G19833_v2.1 ID=Phvul.006G088800.1_Pv_G19833_v2.1; Name=Phvul.006G088800.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=188bp
MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILK
RLFMSKVNKPPLSLSRLIRYTKGKEDKIAVVVGTITDDIRVYEVPQLKIT
ALKFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKH
FGPAPGVPHSHSKPYVRSKGRKFEKARGRRNSRGFRV*
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mRNA from alignment at Chr06:20053409..20055713-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.006G088800.1_Pv_G19833_v2.1 ID=Phvul.006G088800.1_Pv_G19833_v2.1; Name=Phvul.006G088800.1; organism=Phaseolus vulgaris; type=mRNA; length=2305bp; location=Sequence derived from: Chr06:20053409..20055713- (Phaseolus vulgaris
GAAAAGTAGATTGGATATGTAGTTTTGGGCCTCTGTTTGCCTCGTAAGTT ACCCAGCCCAAAACAGAAGCATGAGGCCCAGATCCAATACTAAAAACCCT AGCATACATAACTTCCTTGTAGACTCGCCGTTAAGTCTCAGAGACATAAC CATTCATAGGTGTGTGCTGTTCCAACACCTAAAGCAGCAATGGTAAGCGT TTTTCTTCTCCGTCTCTGGTTTGTTCCTTTGAACGTAGCTCTAATCTGTG TTTAGCTTATATTCGACAACTCTTTATGTTTTTGTATTTGCCTATGATAC GCAGGGGATTGATCTTAAGGCTGGGGGTAAGAGCAAAAAGACCAAAAGAA CAGCACCCAAGTCCAACGACATCTACCTCAAACTACTTGTCAAGGTTTCT CTCTCTTCGATACTACTTTGCGATGTTTATTATGAATATGATTCCCTAGA TCTGTTGTGTGTGTTTTCGTTTTTCGCGACGATGATGATAAATGTGAATC CCAGCTCATTATGAGGCCCTTCTCCATTTGAAAGGTCTGGGAATATACCT TTTCCACATTTGTCTGAGCCTCTGCACACTTTTCTTCCATACTTTTGAAA TATTTTCAATTCGAATATTAATTGATCACATTAGTGAAATTATCCCTTAT GCATGACACCCATTTTAAATAGTGTATCGTCTCATTGTTTGTACTGCTGC CAAAATCTCAATTTTTCCCTTTGAATGTAGTCTACTTTTTGTGTACAGTT TTGTCATTGCATCCACATACTCAAGGTTCCCAATGATGCTTTCCTTTTTA CCATGCTAATGCTGATGACATGATTGTTACTTCTATTGTACTGAGGGAAC TTCATCGATTTTTTATTTTCGTTTATCAAATTTTTAAGTGTGTTAAGTTG TTCAAACAGTTTTACTAGGTTTAGATTTGGATTCAGATCAGAAATATGTT TATGATACTACTTATGCATAGAAAGATTCTGATTATATGTTACATACGCA GCTTTATCGCTTCCTTGTTCGAAGGACTGGCAGCAATTTCAATGCTGTGA TACTCAAGCGCTTGTTCATGAGCAAGGTGAACAAACCTCCACTTTCTTTG TCGAGGTTGATTAGGTATACAAAGGGGAAGGTATGTCTCTCTGTCTCTTC TTTTACATACTGTACTGGTGTAGCTAGTTCTCATATCGTTTAATTAATTA TAGCTTACATTTCCACGTTTTATTTTTGTCAAATGTAGGAAGATAAAATT GCTGTTGTAGTGGGGACTATAACTGATGATATCAGAGTATATGAAGTTCC GCAATTGAAGATTACAGCACTTAAGTTTACAGAGAGAGCACGTGCAAGAA TAGAGAAGGCAGGCGGTGAATGCTTGACCTTTGATCAGCTTGCACTTAGG GCTCCTTTGGGTCAGAATACGGTATGTGTGGTTAACAATTTGGAGTAATT TCTTAATCTTACACTTGTGTCAATTAAACTAATATTTGGTTCTTGTGCAC ACATTTTTGAACTGAAATTGATTTTTCACGTCTTTAGAATGGGGTTTTGG TATTCCTTATGGTATGGAAATATACTTGGTTTGTCAATCCGATTCCAAAT CACATGCAGTTGACTTATGTGATCTAAGCTTTCAAAGGCTAAAAGTTCAT TTATGTATTTCAATGCAGGTCCTTCTTAGAGGCCCCAAGAATGCCCGGGA AGCTGTGAAGCACTTTGGTCCTGCTCCTGGTGTGCCACACAGCCATTCCA AACCCTATGTTCGATCCAAGGGAAGGAAGTTTGAGAAGGCTAGAGGAAGG AGAAACAGCAGAGGATTTAGAGTTTAAGAAGATAGCTTTCTATTTTTTTT GGTAGTGTTCTGAAATTCAACATTTTGTCATAGGCGCTGGGTTGGTGACT TTTTCTTCTCATATTTTTGTTATAAGAATTCAAGTATGGACATCGTTCTT GGCCCCCTTGTTTTTACATTAACGTGTATTAAAAACATATTTGATGAATT GTGAAAAACCCTGTCATTTATCGTGACCTTTTTTCCGTGGCCTGAGTGGG TTAGCCTTTTTTAATGGTGCCTCCCTCTGTCACTACCATTTTAATAAACA ATATTAATCGGAAATTGTTTTCGACATAAAATAAGGAAACATTGTAAATC GTTTTGTGTAGTCTATTTAGATGTCGAATTATCTTTATGAATTCTTAATT TGATGATGCATTTGTTTTTGGGTTTTTTGGGTATGTATTTCAATAATCTT GTGTTAGCACAAGATCAACTTCTGTAATCTGAATATGAGAAGTTCAAATT CTTAT
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Coding sequence (CDS) from alignment at Chr06:20053409..20055713-

>Phvul.006G088800.1_Pv_G19833_v2.1 ID=Phvul.006G088800.1_Pv_G19833_v2.1; Name=Phvul.006G088800.1; organism=Phaseolus vulgaris; type=CDS; length=564bp; location=Sequence derived from: Chr06:20053409..20055713- (Phaseolus vulgaris
ATGGGGATTGATCTTAAGGCTGGGGGTAAGAGCAAAAAGACCAAAAGAAC
AGCACCCAAGTCCAACGACATCTACCTCAAACTACTTGTCAAGCTTTATC
GCTTCCTTGTTCGAAGGACTGGCAGCAATTTCAATGCTGTGATACTCAAG
CGCTTGTTCATGAGCAAGGTGAACAAACCTCCACTTTCTTTGTCGAGGTT
GATTAGGTATACAAAGGGGAAGGAAGATAAAATTGCTGTTGTAGTGGGGA
CTATAACTGATGATATCAGAGTATATGAAGTTCCGCAATTGAAGATTACA
GCACTTAAGTTTACAGAGAGAGCACGTGCAAGAATAGAGAAGGCAGGCGG
TGAATGCTTGACCTTTGATCAGCTTGCACTTAGGGCTCCTTTGGGTCAGA
ATACGGTCCTTCTTAGAGGCCCCAAGAATGCCCGGGAAGCTGTGAAGCAC
TTTGGTCCTGCTCCTGGTGTGCCACACAGCCATTCCAAACCCTATGTTCG
ATCCAAGGGAAGGAAGTTTGAGAAGGCTAGAGGAAGGAGAAACAGCAGAG
GATTTAGAGTTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR021131Ribosomal_uL15/eL18
IPR036227Ribosomal_uL15/eL18_sf