Phvul.006G088800.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.006G088800.1 vs. DB:Swiss
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2) HSP 1 Score: 335.109 bits (858), Expect = 7.029e-118 Identity = 161/187 (86.10%), Postives = 176/187 (94.12%), Query Frame = 1 Query: 1 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIRYTKGKEDKIAVVVGTITDDIRVYEVPQLKITALKFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHSKPYVRSKGRKFEKARGRRNSRGFRV 561 MGIDL AGGKSKKTKRTAPKS+D+YLKL VKLYRFLVRRT S FN VILKRLFMSKVNK PLSLSRL+ + GKEDKIAV+VGTITDD+RV+E+P +K+TAL+FTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSHSKPYVR+KGRKFEKARG+R SRGF+V Sbjct: 1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRKSRGFKV 187
BLAST of Phvul.006G088800.1 vs. DB:Swiss
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1) HSP 1 Score: 333.569 bits (854), Expect = 2.082e-117 Identity = 160/187 (85.56%), Postives = 178/187 (95.19%), Query Frame = 1 Query: 1 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIRYTKGKEDKIAVVVGTITDDIRVYEVPQLKITALKFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHSKPYVRSKGRKFEKARGRRNSRGFRV 561 MGIDL AGGKSKKTKRTAPKS+D+YLKLLVKLYRFLVRR+ SNFNAVILKRLFMSKVNK PLSLSRL+ + GK+DKIAV+VGTITDD+RV+E+P +K+TAL+FTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHS++KPYVR KGRKFEKARG+R SRGF+V Sbjct: 1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKRKSRGFKV 187
BLAST of Phvul.006G088800.1 vs. DB:Swiss
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV=1) HSP 1 Score: 325.479 bits (833), Expect = 3.700e-114 Identity = 161/184 (87.50%), Postives = 173/184 (94.02%), Query Frame = 1 Query: 10 DLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIRYTKGKEDKIAVVVGTITDDIRVYEVPQLKITALKFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHSKPYVRSKGRKFEKARGRRNSRGFRV 561 DLKAGGK+KKTKRT+PKSNDIYLKLLVKLYRFLVRRT SNFNAVILKRLFMSKVN+PPLSLSRLI+Y +GKE KI VVVG +TDDIRVY+VP +K+TALKFTE ARARI+KAGGECLTFDQLALR PL +TVLLRGPKNAREAVKHFGPAPGVPHSH+KPYVRSKGRKFEKARGRR SRGFRV Sbjct: 1 DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 183
BLAST of Phvul.006G088800.1 vs. DB:Swiss
Match: RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A PE=3 SV=3) HSP 1 Score: 296.975 bits (759), Expect = 7.372e-103 Identity = 146/188 (77.66%), Postives = 162/188 (86.17%), Query Frame = 1 Query: 1 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIRYTKGKEDKIAVVVGTITDDIRVYEVPQLKITALKFTERARARIEKAGGECLTFDQLALRAP-LGQNTVLLRGPKNAREAVKHFGPAPGVPHSHSKPYVRSKGRKFEKARGRRNSRGFRV 561 MGIDL AGGKSKKTKRT PKS+D+YLKLLVK R+LVRRT S FNAVILKRLFMSKVNK PLSLSRL+RY GK+ KIAV+VGT+TDD+R+ +VP L +TAL+FTE ARARI KAGGECLTFDQLAL P +NTVLLRGPKN REAVKHFGPAPGVPHSH+KPYVR G+K E ARGRR SRGF+V Sbjct: 1 MGIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGRRRSRGFKV 188
BLAST of Phvul.006G088800.1 vs. DB:Swiss
Match: RL18_TIMBA (60S ribosomal protein L18 OS=Timarcha balearica OX=79517 GN=RpL18 PE=2 SV=1) HSP 1 Score: 251.136 bits (640), Expect = 9.805e-85 Identity = 122/188 (64.89%), Postives = 154/188 (81.91%), Query Frame = 1 Query: 1 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIRYTK--GKEDKIAVVVGTITDDIRVYEVPQLKITALKFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHSKPYVRSKGRKFEKARGRRNSRGFR 558 MGID+ +K +RT PKS D+YL+LLVKLYR+L RRTG+ FN +ILKRLFMSK+ +PP+SLS+++R+ K G+E AV+VGT+TDD R++E+P+L I AL+ T+ ARA I KAGGE +TFDQLALR+P G TVLL+G +NAREAVKHFGPAPGVPHSH+KP VRSKGRKFE+ARGRR S G++ Sbjct: 1 MGIDINHK-YDRKVRRTEPKSQDVYLRLLVKLYRYLARRTGAKFNKIILKRLFMSKIYRPPISLSKVVRFMKKPGRELLTAVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGEVITFDQLALRSPTGSKTVLLQGKRNAREAVKHFGPAPGVPHSHAKPLVRSKGRKFERARGRRRSCGYK 187
BLAST of Phvul.006G088800.1 vs. DB:Swiss
Match: RL18_DIACI (60S ribosomal protein L18 OS=Diaphorina citri OX=121845 GN=RpL18 PE=2 SV=1) HSP 1 Score: 245.743 bits (626), Expect = 1.280e-82 Identity = 113/188 (60.11%), Postives = 155/188 (82.45%), Query Frame = 1 Query: 1 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIRYTK--GKEDKIAVVVGTITDDIRVYEVPQLKITALKFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHSKPYVRSKGRKFEKARGRRNSRGFR 558 MG+D+ ++ +RT PKS D+YL+LLVKLYRFL RRT S FN +ILKRLFMSK+N+PP+++S+++R+ K +E ++AV+VGTI DD R++ +P+L + AL+ T++AR+RI KAGGE +TFDQLALRAP G+NTVL++G + REA KHFGPAPGVPHSH+K +VRSKGR+FE+ARGRR S+G++ Sbjct: 1 MGVDI-CHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTVCALRVTDKARSRILKAGGEIITFDQLALRAPTGKNTVLMQGKRTGREANKHFGPAPGVPHSHTKAHVRSKGRQFERARGRRTSKGYK 187
BLAST of Phvul.006G088800.1 vs. DB:Swiss
Match: RL18_LYSTE (60S ribosomal protein L18 OS=Lysiphlebus testaceipes OX=77504 GN=RpL18 PE=2 SV=1) HSP 1 Score: 244.202 bits (622), Expect = 6.126e-82 Identity = 118/188 (62.77%), Postives = 153/188 (81.38%), Query Frame = 1 Query: 1 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIRYTK--GKEDKIAVVVGTITDDIRVYEVPQLKITALKFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHSKPYVRSKGRKFEKARGRRNSRGFR 558 MGID+ +K +RT P+S DIYL+LLVK+YRFL RRT S F+ +ILKRLFMS++N PP+SL+R+ R+ K +++ IAVVVGTITDD R++E+P+LK+ AL+ TE+AR RI KAGGE +TF++LA +P G TVL++G +NAREAVKHFGPAPGVPHSH+KP VRSKGRKFE+ARGRR S G++ Sbjct: 1 MGIDINHK-YDRKVRRTEPRSQDIYLRLLVKVYRFLARRTNSKFSRIILKRLFMSRINLPPISLARVCRFMKKESRKNSIAVVVGTITDDARIFEIPKLKVCALRITEKARGRILKAGGEIITFEKLAEISPTGNKTVLMQGRRNAREAVKHFGPAPGVPHSHTKPLVRSKGRKFERARGRRKSCGYK 187
BLAST of Phvul.006G088800.1 vs. DB:Swiss
Match: RL18_RAT (60S ribosomal protein L18 OS=Rattus norvegicus OX=10116 GN=Rpl18 PE=1 SV=2) HSP 1 Score: 239.58 bits (610), Expect = 3.257e-80 Identity = 117/176 (66.48%), Postives = 142/176 (80.68%), Query Frame = 1 Query: 1 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIRYTK--GKEDKIAVVVGTITDDIRVYEVPQLKITALKFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHSKPYVRSKGRKFE 522 MG+D++ K +K +R PKS DIYL+LLVKLYRFL RRT S FN V+LKRLFMS+ N+PPLSLSR+IR K G+E+K AVVVGTITDD+R+ EVP+LK+ AL+ + RAR+RI KAGG+ LTFDQLAL +P G+ TVLL GP+ RE +HFG APG PHSH+KPYVRSKGRKFE Sbjct: 1 MGVDIRHN-KDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFE 175
BLAST of Phvul.006G088800.1 vs. DB:Swiss
Match: RL18_IXOSC (60S ribosomal protein L18 OS=Ixodes scapularis OX=6945 GN=RpL18 PE=2 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 7.991e-80 Identity = 114/176 (64.77%), Postives = 148/176 (84.09%), Query Frame = 1 Query: 1 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIRYTK--GKEDKIAVVVGTITDDIRVYEVPQLKITALKFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHSKPYVRSKGRKFE 522 MGID+ +K R PKS ++YL LLVK+YRFL RR+G+ FN ++LKRLFMS++NKP +SL+R+ R+ K G+E+ IAVVVGT+TDD+R+Y+VP+L++ AL+ TERARARI KAGGE LTFDQLA++AP G+ TVL++GP+N+REA +HFGPAPGVPHSH+KPYVRSKGRKFE Sbjct: 1 MGIDINHK-YDRKVVRRRPKSENVYLGLLVKVYRFLARRSGAKFNRIVLKRLFMSRINKPVISLARVTRFMKKPGRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILKAGGEILTFDQLAVQAPKGKGTVLMQGPRNSREACRHFGPAPGVPHSHTKPYVRSKGRKFE 175
BLAST of Phvul.006G088800.1 vs. DB:Swiss
Match: RL18_MACFA (60S ribosomal protein L18 OS=Macaca fascicularis OX=9541 GN=RPL18 PE=2 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 8.627e-80 Identity = 118/176 (67.05%), Postives = 141/176 (80.11%), Query Frame = 1 Query: 1 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIRYTK--GKEDKIAVVVGTITDDIRVYEVPQLKITALKFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHSKPYVRSKGRKFE 522 MG+D++ K +K +R PKS DIYL+LLVKLYRFL RRT S FN V+LKRLFMS+ N+PPLSLSR+IR K G+E+K AVVVGTITDD+RV EVP+LK+ AL+ T RAR+RI +AGG+ LTFDQLAL +P G TVLL GP+ RE +HFG APG PHSH+KPYVRSKGRKFE Sbjct: 1 MGVDIRHN-KDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFE 175 The following BLAST results are available for this feature:
BLAST of Phvul.006G088800.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.006G088800.1_Pv_G19833_v2.1 >Phvul.006G088800.1_Pv_G19833_v2.1 ID=Phvul.006G088800.1_Pv_G19833_v2.1; Name=Phvul.006G088800.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=188bpback to top mRNA from alignment at Chr06:20053409..20055713- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.006G088800.1_Pv_G19833_v2.1 ID=Phvul.006G088800.1_Pv_G19833_v2.1; Name=Phvul.006G088800.1; organism=Phaseolus vulgaris; type=mRNA; length=2305bp; location=Sequence derived from: Chr06:20053409..20055713- (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr06:20053409..20055713- >Phvul.006G088800.1_Pv_G19833_v2.1 ID=Phvul.006G088800.1_Pv_G19833_v2.1; Name=Phvul.006G088800.1; organism=Phaseolus vulgaris; type=CDS; length=564bp; location=Sequence derived from: Chr06:20053409..20055713- (Phaseolus vulgarisback to top |