Transcript Overview
Name Phvul.006G089300.3
Unique Name Phvul.006G089300.3_Pv_G19833_v2.1
Type mRNA
Organism Phaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Phvul.006G089300.3 Phvul.006G089300.3_Pv_G19833_v2.1-protein Phaseolus vulgaris polypeptide
Phvul.006G089300.3_Pv_G19833_v2.1 Phvul.006G089300.3_Pv_G19833_v2.1 Phaseolus vulgaris polypeptide
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Phvul.006G089300.3.v2.1.CDS.13 Phvul.006G089300.3.v2.1.CDS.13_Pv_G19833_v2.1 Phaseolus vulgaris CDS
Phvul.006G089300.3.v2.1.CDS.12 Phvul.006G089300.3.v2.1.CDS.12_Pv_G19833_v2.1 Phaseolus vulgaris CDS
Phvul.006G089300.3.v2.1.CDS.11 Phvul.006G089300.3.v2.1.CDS.11_Pv_G19833_v2.1 Phaseolus vulgaris CDS
Phvul.006G089300.3.v2.1.CDS.10 Phvul.006G089300.3.v2.1.CDS.10_Pv_G19833_v2.1 Phaseolus vulgaris CDS
Phvul.006G089300.3.v2.1.CDS.9 Phvul.006G089300.3.v2.1.CDS.9_Pv_G19833_v2.1 Phaseolus vulgaris CDS
Phvul.006G089300.3.v2.1.CDS.8 Phvul.006G089300.3.v2.1.CDS.8_Pv_G19833_v2.1 Phaseolus vulgaris CDS
Phvul.006G089300.3.v2.1.CDS.7 Phvul.006G089300.3.v2.1.CDS.7_Pv_G19833_v2.1 Phaseolus vulgaris CDS
Phvul.006G089300.3.v2.1.CDS.6 Phvul.006G089300.3.v2.1.CDS.6_Pv_G19833_v2.1 Phaseolus vulgaris CDS
Phvul.006G089300.3.v2.1.CDS.5 Phvul.006G089300.3.v2.1.CDS.5_Pv_G19833_v2.1 Phaseolus vulgaris CDS
Phvul.006G089300.3.v2.1.CDS.4 Phvul.006G089300.3.v2.1.CDS.4_Pv_G19833_v2.1 Phaseolus vulgaris CDS
Phvul.006G089300.3.v2.1.CDS.3 Phvul.006G089300.3.v2.1.CDS.3_Pv_G19833_v2.1 Phaseolus vulgaris CDS
Phvul.006G089300.3.v2.1.CDS.2 Phvul.006G089300.3.v2.1.CDS.2_Pv_G19833_v2.1 Phaseolus vulgaris CDS
Phvul.006G089300.3.v2.1.CDS.1 Phvul.006G089300.3.v2.1.CDS.1_Pv_G19833_v2.1 Phaseolus vulgaris CDS
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Phvul.006G089300.3.v2.1.three_prime_UTR.1 Phvul.006G089300.3.v2.1.three_prime_UTR.1_Pv_G19833_v2.1 Phaseolus vulgaris three_prime_UTR
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Phvul.006G089300.3.v2.1.five_prime_UTR.1 Phvul.006G089300.3.v2.1.five_prime_UTR.1_Pv_G19833_v2.1 Phaseolus vulgaris five_prime_UTR
Homology
BLAST of Phvul.006G089300.3 vs. DB:Swiss
Match:
HGNAT_MOUSE (Heparan-alpha-glucosaminide N-acetyltransferase OS=Mus musculus OX=10090 GN=Hgsnat PE=1 SV=2)
HSP 1 Score: 100.523 bits (249), Expect = 1.258e-21
Identity = 101/371 (27.22%), Postives = 171/371 (46.09%), Query Frame = 1
Query: 37 SEELPVSDKKLPKSKRVAS-----LDIFRGLTVALMILVDDAGGQWPMIGHAPWNGCNLADFVMPFFLFIVGMAIPLALKRIPNRXXXXXXXXXXXXXXXXXXXXXXXXFSHAPDNLTYGVDMKYIRWCGILQRIALAYLVVALVEIFSRSAQASDPEPTQLSIFKLY----YW-HWLVLACILAVYLALLYGMYVPDWQFTVHNPDSIYNGTTLTVTCGVRGKLDPPCN--VVGYIDREVLGMNHMYKRPAWRRSEACTEKSPYEGPFKRSAPSWCYSPFEPEGXXXXXXXXXXXXXGLHFGHVLVHLQDHS----SRLKHWXXXXXXXXXXXXXXHFTHA-IPLNKQLYTLSYVCVTSGAAALVFSAFY 1098
S P+S P+++R ++ +D FRGL + LM+ V+ GG++ H+ WNG +AD V P+F+FI+G +I L++ I R + K+L + + F + + + P+ + +R G+LQR+ + Y VVA++E F D + S F L W WL + + +++LAL + + VP P I G GK P C GYIDR +LG NH+Y+ P+ + ++PEG+L +I++I+ A +G+ G +LV+ +D + +R W + + + IP+NK L+++SYV S A + Y
Sbjct: 240 SRADPLSADYQPETRRSSANRLRCVDTFRGLALVLMVFVNYGGGKYWYFKHSSWNGLTVADLVFPWFVFIMGTSIFLSMTSILQRGCSKLKLLGKIVWRSFLLICIGVIIVN-PNYCLGPLSWDKVRIPGVLQRLGVTYFVVAVLEFFFWKP-VPDSCTLESSCFSLRDITSSWPQWLTILTLESIWLALTFFLPVPGCPTGYLGPGGI----------GDLGKY-PHCTGGAAGYIDRLLLGDNHLYQHPS------------------STVLYHTEVAYDPEGVLGTINSIVMAFLGVQAGKILVYYKDQTKAILTRFAAWCCILGLISIVLTKVSANEGFIPINKNLWSISYVTTLSCFAFFILLILY 579
BLAST of Phvul.006G089300.3 vs. DB:Swiss
Match:
HGNAT_HUMAN (Heparan-alpha-glucosaminide N-acetyltransferase OS=Homo sapiens OX=9606 GN=HGSNAT PE=1 SV=2)
HSP 1 Score: 93.5893 bits (231), Expect = 2.413e-19
Identity = 95/350 (27.14%), Postives = 163/350 (46.57%), Query Frame = 1
Query: 82 RVASLDIFRGLTVALMILVDDAGGQWPMIGHAPWNGCNLADFVMPFFLFIVGMAIPLALKRIPNRXXXXXXXXXXXXXXXXXXXXXXXXFSHAPDNLTYGVDMKYIRWCGILQRIALAYLVVALVE-IFSRSAQ---ASDPEPTQLSIFKLYYWHWLVLACILAVYLALLYGMYVPDWQFTVHNPDSIYNGTTLTVTCGVRGKLDPPCN--VVGYIDREVLGMNHMYKRPAWRRSEACTEKSPYEGPFKRSAPSWCYSPFEPEGXXXXXXXXXXXXXGLHFGHVLVHLQDHSS----RLKHWXXXXXXXXXXXXXXHFTHA-IPLNKQLYTLSYVCVTSGAAALVFSAFY 1098
R+ S+D FRG+ + LM+ V+ GG++ HA WNG +AD V P+F+FI+G +I L++ I R + ++L + F + + + P+ + +R G+LQR+ + Y VVA++E +F++ AS+ L + WL++ + ++L L + + VP P I G GK P C GYIDR +LG +H+Y+ P S A + ++PEGIL +I++I+ A +G+ G +L++ + + R W + + + + IP+NK L++LSYV S A + Y
Sbjct: 267 RLRSVDTFRGIALILMVFVNYGGGKYWYFKHASWNGLTVADLVFPWFVFIMGSSIFLSMTSILQRGCSKFRLLGKIAWRSFLLICIGIIIVN-PNYCLGPLSWDKVRIPGVLQRLGVTYFVVAVLELLFAKPVPEHCASERSCLSLRDITSSWPQWLLILVLEGLWLGLTFLLPVPGCPTGYLGPGGI----------GDFGKY-PNCTGGAAGYIDRLLLGDDHLYQHP----SSAVLYHTEVA--------------YDPEGILGTINSIVMAFLGVQAGKILLYYKARTKDILIRFTAWCCILGLISVALTKVSENEGFIPVNKNLWSLSYVTTLSSFAFFILLVLY 586
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
0 1 Expect = 9.1E-8 / Score = 31.9 Sequence PF07786
IPR Term IPR Description Source Source Term Source Description Alignment
IPR012429 Domain of unknown function DUF1624 PFAM PF07786 DUF1624 coord: 28..153 e-value: 9.1E-8 score: 31.9
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.006G089300.3_Pv_G19833_v2.1
>Phvul.006G089300.3_Pv_G19833_v2.1 ID=Phvul.006G089300.3_Pv_G19833_v2.1; Name=Phvul.006G089300.3_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=389bp MAEIKGEHGLNVSEELPVSDKKLPKSKRVASLDIFRGLTVALMILVDDAG GQWPMIGHAPWNGCNLADFVMPFFLFIVGMAIPLALKRIPNRLLAVKKVL VRTLKLLFWGLLLQGGFSHAPDNLTYGVDMKYIRWCGILQRIALAYLVVA LVEIFSRSAQASDPEPTQLSIFKLYYWHWLVLACILAVYLALLYGMYVPD WQFTVHNPDSIYNGTTLTVTCGVRGKLDPPCNVVGYIDREVLGMNHMYKR PAWRRSEACTEKSPYEGPFKRSAPSWCYSPFEPEGILSSISAILSAIIGL HFGHVLVHLQDHSSRLKHWLLLGLALLASGLILHFTHAIPLNKQLYTLSY VCVTSGAAALVFSAFYIMLKESSQDSSMGGTTMTLIIH* back to top mRNA from alignment at Chr06:20093501..20098250-
Legend: five_prime_UTR polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.006G089300.3_Pv_G19833_v2.1 ID=Phvul.006G089300.3_Pv_G19833_v2.1; Name=Phvul.006G089300.3; organism=Phaseolus vulgaris; type=mRNA; length=4750bp; location=Sequence derived from: Chr06:20093501..20098250- (Phaseolus vulgarisTCTCATTAGATTAATAACAATAATTTGAAAATCATGAACAGAAAGTAGCT
AGATTGTTTTCTTAATCAACTATGTTAATTAATATTGTTGCAGTGATTAT
TCTGTAGGAGAATCAGGAATTAGCAGAGAGAGTAAAGAGAGTTGAGAGTA
GCATAATCCAATTCAAGTTGGAGTTTGAGTAAAACAATTCACAAACAGC A
TGGCCGAAATCAAAGGTGAACACGGCCTTAATGTTTCCGAAGAGCTTCCT
GTTTCAGACAAAAAGCTGCCTAAATCAAAGCGTGTTGCGTCGCTTGACAT
CTTTCGCGGTCTCACTGTTGCG GTACTTTTCTCTTCTTTCTAAATTTTGC
AGTTCAGTTGTTTTTTAGTACTGTTATCATTCATATATGAGGTGAAAGCC
TATGAAGATTGCTATGAAGATCAAAGTAATATGAAGAATGCTATGGGATT
AGTCACTTGTTTCAATTACTTGGTTATTTATTATGTTTTTTCCATTCATG
TTGTTAGATATAAGGTAGATTATATAGTTTGGGTTGTGTTCCTACAAAGC
TAGGACTCTGCAGAACACTTCTTCTTGTTACAATCTTCTCATCTTTTCGG
TCTCTCGGTTAGGCTTAGGATCTCCTTTGATCTGAACACGATGAGGGGAG
TATCTGTGAAGACACTCTGACGATCAAGTCAGTTCGAGATACAAGAAGAG
TATGGAGTGAATAGTTACCTTGAATATTGTGTCTCTCCTGCTATTTATAC
TGTTTTAGATGGACTCTGACTGTTATGGGTTTGTTTTAGGGTCCAATTGA
AGGCTCAATTGTGCTTAAGTTGGTTTATTTATGTCTAATTACGTGTTTAG
TTGTACCTCTTGTCAGCTAGTCGGCTTTTCGGTATGAAGTTTATTTATAC
TGTTGAATTTGGTATGAAGTTCATTTATATGGGTTGTTGTTGATAGTGTG
AATTAAGAATATCTCCAATGTGTTTATTTATTCCCCATCTTATTCTATAA
TAGAAAACATGTTAGAAAGAATGTTACAAAAAGAGTACGTTATTAACACT
TATTTTTAGTCAATATCAGCGCGTCCTTGCATCTGATTAGGTGTTTAGAT
CGTTGTTTTTCCTTAGTTCAGTGTTGTCAAGTCTCGCTTTAACATGTTCT
GATGCTATGTGATGTAGTTGATGATCTTGGTTGATGATGCCGGAGGGCAA
TGGCCAATGATTGGCCATGCGCCATGGAATGGCTGCAACCTTGCTGATTT
TGTCATGCCTTTCTTTTTGTTCATTGTGGGGATGGCCATTCCTCTGGCTC
TCAAG GTTAGCCGCGAATGAGAAAATAGGTTGCTATGAATGCTTCAAGAA
TTAGTTTCTATGTTCCTTTCATTTCTTCTTTTTGGTTCAAACCAACCCTT
TTATTTCTTGATGCTTCCATTTGATGTTCAGAGAATACCAAATAGACTTC
TTGCTGTAAAAAAGGTTCTGGTTAGAACACTCAAACTCCTCTTCTGGGGA
TTGCTCTTGCAAG GTTAGTTTTTCTCATGCATTTCCTTTTACCCTCCTTT
TCCAAATATATCAGCATAGCTAAAGAGTTCCCCTGTTCAAAAGGGGGTGA
GAAAGGAATCAAGAACTTTGTATTTGATATTGCATACACTTTGCTGAGCA
TTACTCCCTGCTGAAATATATTCGGTCTTGTGAAAGTTATTCTTCTATAA
TGTGCAATAATAATTGAACCTAGATTTCATTTTAGCAAATCTAGTTCTGG
TAATAGTCTTAGACATCTTTCGTTGGGTGAAAACGAAACACCCATGGCTT
GTTCTGATATGATGGATGACCTCAATGATGAAGGTGGTTTCTCTCATGCT
CCGGACAATCTAACATATGGTGTTGACATGAAATACATAAGGTGGTGTGG
CATTCTTCAG GTGATTTTGATTTTTTTTTTTCCAGCTCATTTTGATTAGA
TTATATTTTAGCTGATAGTCTGAGTACAAAAAGAATGATACTTGTGTATG
AACCCATTCTAGAGAATTGCTCTAGCATATTTGGTTGTGGCACTGGTGGA
AATATTTTCAAGAAGTGCTCAAGCTAGTGACCCAGAACCCACCCAACTCT
CAATATTCAAGTTGTACTATTGGCATTG GTTAGTCTCTCAAAGTATGGTT
CTGGTTAATTGCTAATATGATATGATTTTGAACATTCTTTTTATTAAAAT
CTCAGGCTGGTGTTGGCTTGCATACTTGCTGTTTACTTGGCTTTACTTTA
TGGAATGTATGTTCCAGACTGGCAATTCACTGTCCATAACCCAGACAGCA
TATACAATGGGACAACTTTAACA GTAAGCTTCCCGTTGGTTGTCTCTTTA
CACTCATGAAGTGGGGATACAAATCAAACGCTATTGATACTCTCTCTATA
CACAAAACACATGAAGTGGGAATATCTATAAAGTAGTATTTGGTTTTCAA
TCCTGGTGATGATCTCGCTTGAGCTCATATGTTAAATACCTCAGTGGACT
GTATTCTGGTTTTTGCATTAAATGATTTTTTTTTTCATTGTTGCTAGTTT
TCAACACAGTTAAAGTTTTCTTTCGGTCAAGCTTTAGCAATTTCTATGCT
AGAAATTATGCAGAAAATGACTTGTGACCGTATTTCTAAATTTTTCTTTA
CTCTGGCTAATTTATTTTCTCTGTCAAATTTAGGTGACCTGTGGTGTGAG
GGGGAAACTCGATCCCCCGTGCAATGTTGTGGGATATATTGACCGAGAGG
TGCTAGGAATGAATCACATGTATAAGCGTCCAGCGTGGAGAAGATCTGAA
GTGTGTTGCTATTTTCTCCCGTACATTATTTTCTACCTTAAATTTGAAAG
ATTTGCTTTGTGGCTGTAGGAATTTTCAAACACCAATTGTCTTTTGGGTG
CTGCAGGCTTGCACCGAGAAATCCCCATATGAAGGACCTTTTAAAAGAAG
TGCACCTTCATGGTGTTATTCTCCTTTTGAGCCAGAAGGAATTTTAAG GT
CTGTATATGGTCTTCTTCAAACCTCTTAGTGTATGTTTGATTAACAGATT
TCAATCAGTTCTTGACCACGTTGGCTTTGTTTTATTTGAAATAGATGCTA
TCATTATATGTGATCAAATAATTGAAAATGTCACTCACATTGTTAGTAAG
AAAGAGTTGAGGACTCCCATATTCACTCTTCCTTTGTTCAACTTCAACAG
CTTGGTTAGAGCAAGCCACTTAATTTTTTCTCACAATTTTGAAATTCACA
GACCCTTTTGAGGACTGTGTAAGATTATGAATTCACCTTTGTATGTGTAA
CTTATTCTGCGGATCATAATAGCAAAGTAGGTGTAACTGCAGCTCAATAT
CTGCTATTCTCTCCGCAATCATTGGATTGCATTTTGGACATGTACTCGTA
CACTTACAG GTGAAGCCTTTCACTCGAAGTAAGCAGTGCTTGAAAATTAC
AATCCTTTAACCTACTATGCTTACTTCTTCACTTTTGTGACTTTAGGATC
ACTCTTCTAGGTTGAAGCACTGGCTTCTCCTTGGCTTAGCACTCCTTGCT
TCAGGACTTATTCTTCACTTCACTCATG GTGTGTGAACTCTTAACTCAGT
GTTGACTGGAACTTACCATGTAACCATTAGTCTATCCTCTGATGTCGCCC
CCTCCCCTTCCATTTGTTGCAGCAATTCCTTTGAATAAACAATTGTACAC
ACTAAGCTATGTTTGTGTAACATCTGGAGCAGCAGCATTAGTTTTTTCAG
CCTTCTACATTATG GTATTTTTTTTCGTAATACTAGAAATTGTGCTTTTC
TTTCTATCAAGGTCTTCTAGTTTGTTTTTCAGTTCAGGTTTACCCCTGTG
ATTGTTGTTCCACATTTCTCATCTGGACGGATTTAGAATTGTCATTGCAG
GTTGATATTTGGGGTTTGACATTCTTGTTCTTGCCTTTGAAATGGATTGG
TATGAATGCCATGCTTGTTTATGTGATGGCAGCTGAAGGAATCTTCGCAG
GATTCATCAATGGGTGGTACTACGATGACCCTCATAATACACTG GTAAAT
TCATCTCCTCTGATTTTCTATATACACCTTGCTCCTGCACTTCAGTTCAA
CATCCTTAAGATGACCCTCTTCATCTCTATTAGTTAAACATCAATATCCC
CTTTATTAGCTATTTTTACTAATCTGGTGGTAAATGAAACAAGTAAAAAC
TTTAAAAATTACTAAGGATAAATCGTATCACTTTCACACAACTTAATTAA
AGTTATGCCACATTAGTATGTTCAAAGTCATGTCACTTTGACATGCACTA
CTTACCTATTTCGTTATTTTTTCAAAATTTTCTATTTTAGTAACTAAGTG
GTAAAATTTCACCTGATATAAAATATTACTCCATTAATTTGATATTTTTT
GTCATTTTCATTCTTATATACGAATCTAACGAAGGTGTAATTTTTTTCAA
CAGA CTTATTGGATACAAAAGCATGTCTTCATTAATGTTTGGCATTCGAA
GAGAGTAGGAATCCTGTTGTATGTTATCTTTGCGGAGATCCTATTCTGGG
CCATTGTTGCAGGCATTTTGCACCGATTCGGCATATATTGGAAGCTTTGA
ATTTCTTCTTTTTTATTCAAAATCTGTTGCTATTATTATTATTTTACTGG
TTATCCTTGTAATTGAAACTAGTTGTTGTTATTGATACAGTAATTCCACT
AAAAATTGTATATGACAAACTATTGTGATAAAACTCAAGTGCAGTGATGG
back to top Coding sequence (CDS) from alignment at Chr06:20093501..20098250-
>Phvul.006G089300.3_Pv_G19833_v2.1 ID=Phvul.006G089300.3_Pv_G19833_v2.1; Name=Phvul.006G089300.3; organism=Phaseolus vulgaris; type=CDS; length=1167bp; location=Sequence derived from: Chr06:20093501..20098250- (Phaseolus vulgaris ATGGCCGAAATCAAAGGTGAACACGGCCTTAATGTTTCCGAAGAGCTTCC TGTTTCAGACAAAAAGCTGCCTAAATCAAAGCGTGTTGCGTCGCTTGACA TCTTTCGCGGTCTCACTGTTGCGTTGATGATCTTGGTTGATGATGCCGGA GGGCAATGGCCAATGATTGGCCATGCGCCATGGAATGGCTGCAACCTTGC TGATTTTGTCATGCCTTTCTTTTTGTTCATTGTGGGGATGGCCATTCCTC TGGCTCTCAAGAGAATACCAAATAGACTTCTTGCTGTAAAAAAGGTTCTG GTTAGAACACTCAAACTCCTCTTCTGGGGATTGCTCTTGCAAGGTGGTTT CTCTCATGCTCCGGACAATCTAACATATGGTGTTGACATGAAATACATAA GGTGGTGTGGCATTCTTCAGAGAATTGCTCTAGCATATTTGGTTGTGGCA CTGGTGGAAATATTTTCAAGAAGTGCTCAAGCTAGTGACCCAGAACCCAC CCAACTCTCAATATTCAAGTTGTACTATTGGCATTGGCTGGTGTTGGCTT GCATACTTGCTGTTTACTTGGCTTTACTTTATGGAATGTATGTTCCAGAC TGGCAATTCACTGTCCATAACCCAGACAGCATATACAATGGGACAACTTT AACAGTGACCTGTGGTGTGAGGGGGAAACTCGATCCCCCGTGCAATGTTG TGGGATATATTGACCGAGAGGTGCTAGGAATGAATCACATGTATAAGCGT CCAGCGTGGAGAAGATCTGAAGCTTGCACCGAGAAATCCCCATATGAAGG ACCTTTTAAAAGAAGTGCACCTTCATGGTGTTATTCTCCTTTTGAGCCAG AAGGAATTTTAAGCTCAATATCTGCTATTCTCTCCGCAATCATTGGATTG CATTTTGGACATGTACTCGTACACTTACAGGATCACTCTTCTAGGTTGAA GCACTGGCTTCTCCTTGGCTTAGCACTCCTTGCTTCAGGACTTATTCTTC ACTTCACTCATGCAATTCCTTTGAATAAACAATTGTACACACTAAGCTAT GTTTGTGTAACATCTGGAGCAGCAGCATTAGTTTTTTCAGCCTTCTACAT TATGCTGAAGGAATCTTCGCAGGATTCATCAATGGGTGGTACTACGATGA CCCTCATAATACACTGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term Definition
IPR012429 HGSNAT_cat