Phvul.006G089700.1

Transcript Overview
NamePhvul.006G089700.1
Unique NamePhvul.006G089700.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr06supercontigChr06:20115495..20119789 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvR253Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuR536Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR555Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0293Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL391Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crpvL392Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL235Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capvL360Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0730Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0911Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0485Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0717Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0781Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0956Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0959Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL215Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspvL437Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR510Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR532Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR572Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR582Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR563Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR573Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR483Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR523Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR470Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR488Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR649Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR663Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL217Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL328Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
carpvL225Cicer arietinum
carpvL338Cicer arietinum
ccapvL290Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL381Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR581Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR617Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR584Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR631Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR620Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR640Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR613Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR627Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR640Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR480Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR501Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR510Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR494Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR512Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
evm.model.Chr06.1126.1.6211316fVigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigun06g099900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigst.05G122200.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vfaba.Tiffany.R1.5g140240.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Hedin2.R1.5g178720.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Cr_08180.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-XM_004494537.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
jg31020.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigan.05G154100.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Ca_07731.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-TanjilR_21488Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_014663121.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vum_05G01252.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Cc_v2.0_08312.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigun06g099900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-KK1_010452Cajanus cajan Asha genome v1.0Cajanus cajan
Ca_01148Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
XM_058882558.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Psat03G0054200-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr06.1001315Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.006G089700Phvul.006G089700_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G089700.1Phvul.006G089700.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.006G089700.1_Pv_G19833_v2.1Phvul.006G089700.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G089700.1.v2.1.CDS.7Phvul.006G089700.1.v2.1.CDS.7_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.006G089700.1.v2.1.CDS.6Phvul.006G089700.1.v2.1.CDS.6_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.006G089700.1.v2.1.CDS.5Phvul.006G089700.1.v2.1.CDS.5_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.006G089700.1.v2.1.CDS.4Phvul.006G089700.1.v2.1.CDS.4_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.006G089700.1.v2.1.CDS.3Phvul.006G089700.1.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.006G089700.1.v2.1.CDS.2Phvul.006G089700.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.006G089700.1.v2.1.CDS.1Phvul.006G089700.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G089700.1.v2.1.three_prime_UTR.1Phvul.006G089700.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G089700.1.v2.1.five_prime_UTR.1Phvul.006G089700.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Phvul.006G089700.1 vs.
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Sequences
The following sequences are available for this feature:

protein sequence of Phvul.006G089700.1_Pv_G19833_v2.1

>Phvul.006G089700.1_Pv_G19833_v2.1 ID=Phvul.006G089700.1_Pv_G19833_v2.1; Name=Phvul.006G089700.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=330bp
MSYPITFRLALFLSFSLTSSSSLPPLPVFSKRYAPSSSSTSQATPSDLLS
LLGSKHNSSAVNPVVARELKSCFKFLVPFSPVEPTHRKLGFGRSKLAGSS
WRKQNELIWWPPEAVLELARLAVDSGGDPDAIHRLLDPTIIPVPDCEGSK
EERCVLTRTPYGRRFICEELNLYMQFLFELIVDRGPSVGLDVTLNRFDLF
HGHLFLAKNSGRLGILFHAKEYPSYDKQVFPYNMGFCQRGSNVTYDDSMN
LRNILWLAPNPGDSDESWVAPGVLVVLDARPDGILYRDLIPDYVKFARTI
YEDDLGHVAVDVNYLNVGSGTGNYQIFIC*
back to top

mRNA from alignment at Chr06:20115495..20119789-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.006G089700.1_Pv_G19833_v2.1 ID=Phvul.006G089700.1_Pv_G19833_v2.1; Name=Phvul.006G089700.1; organism=Phaseolus vulgaris; type=mRNA; length=4295bp; location=Sequence derived from: Chr06:20115495..20119789- (Phaseolus vulgaris
TACAGTTACAATGAGTTATCCAATCACATTCCGATTGGCACTGTTCCTCT
CATTTTCTCTCACGTCGTCATCATCCTTGCCACCGTTACCGGTGTTTTCG
AAGCGTTACGCTCCCTCATCTTCTTCCACTTCCCAAGCAACTCCCTCTGA
CTTGTTGTCTCTGTTGGGTTCCAAACATAACTCCTCAGCTGTGAATCCCG
TCGTAGCACGTGAGCTCAAATCATGCTTCAAATTTCTCGTTCCTTTCTCT
CCAGTAGAGCCTACTCACCGGAAGTTGGGCTTCGGCCGGTCCAAACTCGC
CGGCTCAAGTTGGAGAAAGCAGAACGAGCTTATTTGGTGGCCGCCGGAGG
CCGTTTTGGAGCTGGCGCGTCTCGCCGTCGATTCTGGCGGCGACCCCGAC
GCCATTCATCGCCTTCTCGACCCAACCATTATCCCGGTCAGTTTCTTTGG
CTTTTCTCTTCGGATACTAATGCCTTCACTGTCATCTAAACGCGTGGTGT
TGTGAATTGTGATATCGTAGGTACCTGATTGTGAAGGATCGAAGGAAGAA
CGGTGTGTGCTCACTAGAACTCCCTATGGCAGACGCTTCATTTGTGAGGT
TCGTTCAACAATAGATGGAAATAGCTCACATTGATAGATAGAGTACTTAA
GAAGGTGCATTTCTCTCTCGAATATTGCAGGAACTGAACCTGTATATGCA
GTTTTTGTTTGAGCTCATTGTTGATCGAGGTCCTTCTGTTGGGTTGGATG
TTACCTTGAACCGGTTTGATCTGTTCCATGGTCACCTTTTTCTTGCAAAA
AACTCAGGAAGACTTGGGATCTTGTATGTTCAATTGTTAATAGTAGTGAT
TCTGATGCTTTTTCTGTGTTTGTATACTTTTGTCTTGTTTGTTTCTTGTT
CAGAAGGGGGATTTGTTTCCACTGTTATATGTATTATATAGATTACACTT
AATTCACATTTTAAGAATTTTTTAAGTTTGTCGCAGTTAAGAATGCTACA
ATTTTACATTTGGCAGATTCCATGCAAAGGAATACCCATCATATGATAAA
CAAGTGTTCCCGTACAACATGGGTTTTTGTCAGAGAGGTACATTCTATCA
TTCTTCCGTAAATGTTATGCATGGTTCAACTGAGTTTCTTCTCTGTTAAT
CTTCCAGTTTGTTATAGGTTGTGTTTGGAAATAATGTACTATTGTATTGT
CTGAATCTTGTGAGAGTTCTTCATTTTTTTTTGTGTGTGAGGTGAGGGTA
AAGACATGAGATGAAGAGAAAGGGGAGAACCTTGATGACTTGATGTTCCT
AATTTTAAGACCTCTAGTGAATGGCTTGTGTGTGTATGTATATATATATT
TTTGGTTGTCTTTTCTTTTGATGCTCAACTTTTAGAAAAAAATGTTTATT
TCATTTTTTCAATCCTTTGTTCCTCTTTCAGGGTCCAATGTGACATATGA
TGATTCAATGAATCTGAGAAATATTCTCTGGTTGGCTCCAAATCCTGGTG
ATTCTGACGAGTCTTGGGTGGCACCGGGTATTTCCACTAAAATTACTTTA
TCTGTATAAAGTTTGATTGCTTTTTCATATGGCACTCTCAAGTTTCACAC
TACATTTTTATGATAATAAGTGTGTCAAACGGTAAGTCATCAATCTGTCC
AATAAATTTTTTGGATTATTGTGATTTGGGAACTTTAATAATAATCCTTT
AAGTGATACGTTGCATGGTGGTAAACAATGCTTTGAAATTGATCTGTTAC
TTTTGTCTTTTGATAATTTGGGATGGATATTTTCCTGTGTTAAATTCATC
CAGTAGTCGGTTTATGTAGCCTTGTGGTTACCTGCAGAAAGTCCTCTTAT
TTATTACTGCATTATTCAAATGAGATTGTGATGCCCCTTAACTTTCCATG
GTTTGTATCAAACAAAAACCAATGCGTATTAGGAAATCATAACTCATCCT
CATGAGACCAATTTAGTAAAGTTGAGTTTTTGGCCTTATTTCTAGTTGAT
GTAGGATCTCCAACACACCCTTTATGTTGAGGATATCATGCGTTCACACC
AAGGATATCCAACGTGAGAATCAAGGGAGACCCGATAGTAGGTGGCACGA
TAGATCCAAATCTTGACTGAGATAGGATCTGATACCATATTAAGAAGTAA
GTTTAAGCATAACTCATCCTCATAAAACCGACTTATAAGTTGAGGATTGT
CCTCACTTACATATTGTGAATTGACTTGACCTCTATTTTACGTGAGATCT
CTAACACACTCCCTCATGTATATAATATAATTTGGCCTCATCTTTGATCG
ATGTAGGATCTTCAACGGAAATGAATGCATAGCCTTTCCATCATCACACA
TTTAGAGCTCTTCCAAAGAGTCATTCCTCAAACCCAAAATCCAAAACAAA
GAAGTATGACTAGAAAAAATGAGAAGGTGAGTGATAAAGTCATTGATTTG
GTCGCCTAGGTTATCCTGACAAGATCAAATTTAAGAGTTGAGTTCTTATA
ATTAAGAACTTCATGAAGTTCTTACAAAAGAGAAAACTCAATTTTCTTTG
TTTTCCACTATAATTAAAAAAAGAAATACGAAATCACATTAAAAGTGATG
AAAATGGGCTTAAACAATCACGTAGCCCTACTACTTAAACTCTAGTCTAT
CCATCCTTCTAGATCATATGGATTTGGACTTCATATGTTATCTTCAAATT
GGGCTCAAGTCTTCATCAATATATAGAAATAATATATTTTCACGGGCCTA
TCATGCAACTCAGTTCATTAAATTATAAAAAAACCCAAAATTACATTGAC
CCCATCAAGATCACATCATTTTAAGAAGTGAAGTGAGTTTAACTCTATTT
CATTCTCATAAAACCGACTTGTAAGCTGAGGATTTCCCTTACTTATATAA
TGTAAATTGACCTTATCTCTATTCAACACCCCCCTTACGTATATCCTGTA
ATTTCGTTTTATCTCTAATCGAGGTGGGATCTAAAAAAAATAAATACATA
GCCTTTCCATAATTAAACGTCTACAACTCTTCCAAAGAGTCATTCCACAA
ATCCAAAACAAAGAAGTATGACATTAGTGCCATCATTTCAAGAAATCAGT
ACAATGGCTTTCCTATATATAATCAGCACAATGGCTTTCCTATATATAAT
ACATTGTGCTGGAGATCTCACAAGCGAGATGAGATAAAAAGTATAATATG
TAAGTGGGGTAAATCTCACCTTACTAAGCTGTTTTTTTAGGATGAGTTAC
AATATGGTATCAAAACTTATCTCTAGTCCCACACATGAGATCCATGCCTT
GGTGTTGGGGGAGATTTCACATAGATTAGAAATAAGATCAAATTCTAATA
ATTGTAAGGATAATTTAAGTTTAAATTGAGTTCCTAATAATTTCTGCAGT
AATTCATACTTCACTTGCAAGTGAACACACTTTTGTATACTGTTCACTAA
CTTTTTTATCTCTATTTTTTGTTTATTTTGAATACAAACTGGATGCTGAA
CAACTAACAGACGTTCAATAACTAGCTTACATAGTAAGTGAAATAAACTA
AGGAACAGTAGGCGAGGTTGTAACTGTCGAAGAGATGAGTTGCATAAGAA
AAAGGAGGGAAACTAGACATCTTGGAGATCAAAATTTTAATTGGGAGAGC
CTGGGTCCTTTCTATAACCTCTTCCTCTTCTTAGTTAGAGTTGCACCACA
TTTGGGCAAGATCTGGATTACTAGAGTTCATTTGTAATTAATAATGCATT
TTCTTCACTCATTCTGATCTATTTTTTACCATTGATAAACTTTTCTAGGC
TGTGATAATTAATCATTGGCTTAATAATATCAATTGCACAGGTGTTCTGG
TAGTGCTGGATGCTCGACCTGATGGAATCTTATACAGAGATCTAATACCT
GATTATGTAAAATTTGCAAGGACTATATATGAAGGTTCGGGTTTCTGTTT
CTTTTCTGCACTGCTGCTTTGTGAATCCTGAAATTTTCTCAGAAAGGTTG
ACTTTTTTTTGTCTGTTCTTTCACCTTCTACACTCCCTGTAGATGATCTT
GGGCATGTTGCTGTTGATGTGAACTACTTGAATGTTGGATCTGGAACCGG
AAATTATCAAATATTCATATGTTGATGTTGTGATCAGTTCATAAACTGAC
GTACTTTCACTTCCCAACGACACGCCAGCTTATATAAATGAAGATTGGGT
GCCTCTTTTTAGCTAGAAATTTCGATGTGCATTTTATATGAAAGAGAATC
ATTTCACACATTCTTATCCTTGCGTATGTAAAGAAACTTCTTCAC
back to top

Coding sequence (CDS) from alignment at Chr06:20115495..20119789-

>Phvul.006G089700.1_Pv_G19833_v2.1 ID=Phvul.006G089700.1_Pv_G19833_v2.1; Name=Phvul.006G089700.1; organism=Phaseolus vulgaris; type=CDS; length=990bp; location=Sequence derived from: Chr06:20115495..20119789- (Phaseolus vulgaris
ATGAGTTATCCAATCACATTCCGATTGGCACTGTTCCTCTCATTTTCTCT
CACGTCGTCATCATCCTTGCCACCGTTACCGGTGTTTTCGAAGCGTTACG
CTCCCTCATCTTCTTCCACTTCCCAAGCAACTCCCTCTGACTTGTTGTCT
CTGTTGGGTTCCAAACATAACTCCTCAGCTGTGAATCCCGTCGTAGCACG
TGAGCTCAAATCATGCTTCAAATTTCTCGTTCCTTTCTCTCCAGTAGAGC
CTACTCACCGGAAGTTGGGCTTCGGCCGGTCCAAACTCGCCGGCTCAAGT
TGGAGAAAGCAGAACGAGCTTATTTGGTGGCCGCCGGAGGCCGTTTTGGA
GCTGGCGCGTCTCGCCGTCGATTCTGGCGGCGACCCCGACGCCATTCATC
GCCTTCTCGACCCAACCATTATCCCGGTACCTGATTGTGAAGGATCGAAG
GAAGAACGGTGTGTGCTCACTAGAACTCCCTATGGCAGACGCTTCATTTG
TGAGGAACTGAACCTGTATATGCAGTTTTTGTTTGAGCTCATTGTTGATC
GAGGTCCTTCTGTTGGGTTGGATGTTACCTTGAACCGGTTTGATCTGTTC
CATGGTCACCTTTTTCTTGCAAAAAACTCAGGAAGACTTGGGATCTTATT
CCATGCAAAGGAATACCCATCATATGATAAACAAGTGTTCCCGTACAACA
TGGGTTTTTGTCAGAGAGGGTCCAATGTGACATATGATGATTCAATGAAT
CTGAGAAATATTCTCTGGTTGGCTCCAAATCCTGGTGATTCTGACGAGTC
TTGGGTGGCACCGGGTGTTCTGGTAGTGCTGGATGCTCGACCTGATGGAA
TCTTATACAGAGATCTAATACCTGATTATGTAAAATTTGCAAGGACTATA
TATGAAGATGATCTTGGGCATGTTGCTGTTGATGTGAACTACTTGAATGT
TGGATCTGGAACCGGAAATTATCAAATATTCATATGTTGA
back to top