Phvul.006G090000.5
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.006G090000.5 vs. DB:Swiss
Match: RAD9A_MOUSE (Cell cycle checkpoint control protein RAD9A OS=Mus musculus OX=10090 GN=Rad9a PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 6.492e-19 Identity = 84/293 (28.67%), Postives = 138/293 (47.10%), Query Frame = 1 Query: 1 MEFTLSDNALKTFARCITCLARIGNELAIQASSSQLLFHTINSSRSAYECISFKPGFFDAYTVSG---NSVQCSVLLKAVCAVLRTPI---ANIDHLTVRLPDPDAPKVRWILDCYNGMRKSYWITCNVEPDIQHLSLDRQKFPSNFVVRPRDLNRLLANFQSSLQEITIIATEPSSLPLDAANEIG-GKAVELRSYMDPTKDSDT-LLHTQLWIDPKEEFLQYVHTGDPIDVTFSVKELKVMAFLSFCEGCEVDIHLLFEKAGEPVLLAPKFGLEDGSHSNFDATLVLATML 855 M+ ++ +K + + L+RIG+EL ++ L T+NSSRSAY C F P FF Y + + ++C +L+KA +V R+ +++ + L + V L C G++K++ ++ +Q + D P R L + +F +L E+T+ IG G+ V LRSY + DS + + T+ I +E Q +H + I VTF +KE + LSF E + + + F+ G PV+ F +ED S DA VLAT+L Sbjct: 1 MKCLITGGNVKVLGKAVHSLSRIGDELYLEPLKDGLSLRTVNSSRSAYACFLFAPLFFQQYQAASPGQDLLRCKILMKAFLSVFRSLAIVEKSVEKCCISLSGSHSHLVVQ-LHCKYGVKKTHNLSFQDCESLQAV-FDPASCPHLLRTPARVLAEAVLSFPLALTEVTL--------------GIGRGRRVILRSYQEEEADSTSKAMVTETSIG--DEDFQQLHAPEGIAVTFCLKEFR--GLLSFAESANLPLTIHFDVPGRPVI----FTIED---SLLDAHFVLATLL 266
BLAST of Phvul.006G090000.5 vs. DB:Swiss
Match: RAD9A_HUMAN (Cell cycle checkpoint control protein RAD9A OS=Homo sapiens OX=9606 GN=RAD9A PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.758e-17 Identity = 90/375 (24.00%), Postives = 164/375 (43.73%), Query Frame = 1 Query: 1 MEFTLSDNALKTFARCITCLARIGNELAIQASSSQLLFHTINSSRSAYECISFKPGFFDAY---TVSGNSVQCSVLLKAVCAVLRTPI---ANIDHLTVRLPDPDAPKVRWILDCYNGMRKSYWITCNVEPDIQHLSLDRQKFPSNFVVRPRDLNRLLANFQSSLQEITIIATEPSSLPLDAANEIG-GKAVELRSYMDPTKDSDT-LLHTQLWIDPKEEFLQYVHTGDPIDVTFSVKELKVMAFLSFCEGCEVDIHLLFEKAGEPVLLAPKFGLEDGSHSNFDATLVLATMLISQLHEGAVSEP----PAGATRAHPNTEERNASYMEQENCRADASSELPSDHTRIWSDLSASAF----KSITPQAERQAQGE 1077 M+ ++ +K + + L+RIG+EL ++ L T+NSSRSAY C F P FF Y T + ++C +L+K+ +V R+ ++ + L + + ++ L C G+RK++ ++ +Q + D P R L + F +L E+T+ IG G+ V LRSY + DS + T++ + EE Q + + + +TF +KE + LSF E +++ + F+ G P + K L DG VLAT+ + H + P P +AH + + + ++ + + ++ +R+ +S S KS P +E + + E Sbjct: 1 MKCLVTGGNVKVLGKAVHSLSRIGDELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLLRCKILMKSFLSVFRSLAMLEKTVEKCCISL-NGRSSRLVVQLHCKFGVRKTHNLSFQDCESLQAV-FDPASCPHMLRAPARVLGEAVLPFSPALAEVTL--------------GIGRGRRVILRSYHEEEADSTAKAMVTEMCLG--EEDFQQLQAQEGVAITFCLKEFR--GLLSFAESANLNLSIHFDAPGRPAIFTIKDSLLDGH-------FVLATLSDTDSHSQDLGSPERHQPVPQLQAHSTPHPDDFANDDIDSYMIAMETTIGNEGSRVLPSISLSPGPQPPKSPGPHSEEEDEAE 348
BLAST of Phvul.006G090000.5 vs. DB:Swiss
Match: RAD9A_MACFA (Cell cycle checkpoint control protein RAD9A OS=Macaca fascicularis OX=9541 GN=RAD9A PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 3.246e-16 Identity = 77/293 (26.28%), Postives = 131/293 (44.71%), Query Frame = 1 Query: 37 FARCITCLARIGNELAIQASSSQLLFHTINSSRSAYECISFKPGFFDAY---TVSGNSVQCSVLLKAVCAVLRTPI---ANIDHLTVRLPDPDAPKVRWILDCYNGMRKSYWITCNVEPDIQHLSLDRQKFPSNFVVRPRDLNRLLANFQSSLQEITIIATEPSSLPLDAANEIG-GKAVELRSYMDPTKDSDT-LLHTQLWIDPKEEFLQYVHTGDPIDVTFSVKELKVMAFLSFCEGCEVDIHLLFEKAGEPVLLAPKFGLEDGSHSNFDATLVLATMLISQLHEGAVSEP 891 + + L+RIG+EL ++ L T+NSSRSAY C F P FF Y T + ++C +L+K+ +V R+ ++ + L + + ++ L C G+RK++ ++ +Q + D P R L + F +L E+T+ IG G+ V LRSY + DS + T++ + EE Q + + + +TF +KE + LSF E +++ + F+ G P + K L DG VLAT+ + H + P Sbjct: 2 LGKAVHSLSRIGDELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLLRCKILMKSFLSVFRSLAMLEKTVEKCCISL-NGRSSRLVVQLHCKFGVRKTHNLSFQDCESLQAV-FDPASCPHMLRAPARVLGEAVLPFPPALAEVTL--------------GIGRGRRVILRSYHEEEADSTAKAMVTEMCLG--EEDFQQLQAQEGVAITFCLKEFR--GLLSFAESANLNLSIHFDAPGRPAIFTIKDSLLDGH-------FVLATLSDTDSHSQDLGSP 267
BLAST of Phvul.006G090000.5 vs. DB:Swiss
Match: RAD9B_HUMAN (Cell cycle checkpoint control protein RAD9B OS=Homo sapiens OX=9606 GN=RAD9B PE=1 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 3.452e-15 Identity = 68/277 (24.55%), Postives = 126/277 (45.49%), Query Frame = 1 Query: 1 MEFTLSDNALKTFARCITCLARIGNELAIQASSSQLLFHTINSSRSAYECISFKPGFFDAY------TVSGNS------VQCSVLLKAVCAVLRTPIA---NIDHLTVRLPDPDAPKVRWILDCYNGMRKSYWITCNVEPDIQHLSLDRQKFPSNFVVRPRDLNRLLANFQSSLQEITIIATEPSSLPLDAANEIGGKAVELRSYMDPTKDSDTLLHTQLWIDPKEEFLQYVHTGDPIDVTFSVKELKVMAFLSFCEGCEVDIHLLFEKAGEPVLLA 786 ++ +S + +K F + + L+RI +E + S L +NSSRSAY C+ F P FF Y +S N ++C + +K++ + R + NI+ + D KV +G+++++ I C E + D+ + +++PR L + F SS +E+T+ T P + L ++NE + D +H+++++ E + G ++TF KELK L+F E I + F+ G+P+ L+ Sbjct: 2 LKCVMSGSQVKVFGKAVQALSRISDEFWLDPSKKGLALRCVNSSRSAYGCVLFSPVFFQHYQWSALVKMSENELDTTLHLKCKLGMKSILPIFRCLNSLERNIEKCRI-FTRSDKCKVVIQFFYRHGIKRTHNI-CFQESQPLQVIFDKNVCTNTLMIQPRLLADAIVLFTSSQEEVTLAVT-PLNFCLKSSNE-------------ESMDLSNAVHSEMFVGSDE--FDFFQIGMDTEITFCFKELK--GILTFSEATHAPISIYFDFPGKPLALS 258
BLAST of Phvul.006G090000.5 vs. DB:Swiss
Match: RAD9B_BOVIN (Cell cycle checkpoint control protein RAD9B OS=Bos taurus OX=9913 GN=RAD9B PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.253e-14 Identity = 72/289 (24.91%), Postives = 132/289 (45.67%), Query Frame = 1 Query: 25 ALKTFARCITCLARIGNELAIQASSSQLLFHTINSSRSAYECISFKPGFFDAYTVSGN----------SVQCSVLLKAVCAVLR---TPIANIDHLTVRLPDPDAPKVRWILDCYNGMRKSYWITCNVEPDIQHLSLDRQKFPSNFVVRPRDLNRLLANFQSSLQEITIIATEPSSLPLDAANEIGGKAVELRSYMDPTKDSDTLLHTQLWIDPKEEFLQYVHTGDPIDVTFSVKELKVMAFLSFCEGCEVDIHLLFEKAGEPVLLAPKFGLEDGSHSNFDATLVLATM 852 ++ F + I L+R+ +EL + S L ++NS RSAY C+ F P FF Y S + ++ C + +K++ + R + N++ + D KV C +G++K + + +Q + + + V++PR L + F SS +E+T+ T P + + ++NE MD T DS +++++++ P E + G ++TF KELK L+F E I + F+ G+P+ L+ L +A +LAT+ Sbjct: 28 VVEVFGKAIQALSRVSDELWLDPSEKGLALRSVNSCRSAYGCVLFSPVFFQHYQWSASVKMNDTDIILNLNCRLGMKSILPIFRCLNSLEKNVEKCKI-FTRSDKCKVVIQFFCRHGIKKIHNVCFQGSRPLQVI-FQKNMCANTLVIQPRVLAEAIVLFTSSQEEVTLAVT-PLKVCIKSSNE---------ESMDLT-DS---VYSEMFVGPDE--FDFFQIGIDTEITFCFKELK--GVLTFSEAIHAPIAIHFDFPGKPMALSIDDML-------LEANFILATL 289
BLAST of Phvul.006G090000.5 vs. DB:Swiss
Match: RAD9_SCHOT (DNA repair protein rad9 OS=Schizosaccharomyces octosporus OX=4899 GN=rad9 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.470e-12 Identity = 69/320 (21.56%), Postives = 131/320 (40.94%), Query Frame = 1 Query: 1 MEFTLSDNALKTFARCITCLARIGNELAIQASSSQLLFHTINSSRSAYECISFKPGFFDAYTVSGN----------SVQCSVLLKAVCAVLRTPIAN-------------------------IDHLTVRLPDPDAPKVRWILDCYNGMRKSYWITCNVEPDIQHLSLDRQKFPSNFVVRPRDLNRLLANFQSSLQEITIIATEPSSLPLDAANEIGGKAVELRSYMDPTKDSDTLLHTQLWIDPKEEFLQYVHTGDPIDVTFSVKELKVMAFLSFCEGCEVDIHLLFEKAGEPVLLAPKFGLEDGSHSNFDATLVLATML 855 MEF +S+ L+ +R L+RI + + + + QL+ T+NSSRS + ++ FFD +T + +V+ S +K + ++ R I ++++ +++ +V + +C +G+ K+Y I + H D+ +N+ + + L L+ +F +E+TI + L E+ L+ PT+ T + ID KE + V + I +T S+KE + L E I + +G+P L F G +A +LAT++ Sbjct: 1 MEFVVSNTNLRDLSRIFLNLSRIDDAVNWEINKDQLILTTLNSSRSGFGKVTLTKKFFDKFTFHPDTLFLTGFVSPTVRLSTQIKPILSIFRNKIFESTLLVNNNLNTNAGAAESSSKKNVVVENIQMQITSGKECRVIFKFNCKHGVVKTYKIAYE-QTQTLHAVFDKASCHNNWQINSKILKDLIEHFGQKTEELTIQPVQGRVLLTSFTEEVVHNKDVLKQ---PTQ-------TTVSIDGKE--FEQVSLNEGIIITLSLKEFRAAVLL--AESLGTSIASYYSVSGKPAL----FTFNKGKFMEIEAQFILATVM 301
BLAST of Phvul.006G090000.5 vs. DB:Swiss
Match: RAD9B_MOUSE (Cell cycle checkpoint control protein RAD9B OS=Mus musculus OX=10090 GN=Rad9b PE=1 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 3.113e-8 Identity = 68/298 (22.82%), Postives = 137/298 (45.97%), Query Frame = 1 Query: 13 LSDNALKTFARCITCLARIGNELAIQASSSQLLFHTINSSRSAYECISFKPGFFDAY------TVSGN----SVQCSVLLKAVCAVLRTPIA---NIDHLTVRLPDPDAPKVRWILDCY--NGMRKSYWITCNVEPDIQHLSLDRQK--FPSNFVVRPRDLNRLLANFQSSLQEITIIATEPSSLPLDAANEIGGKAVELRSYMDPTKDSDTLLHTQLWIDPKEEFLQYVHTGDPIDVTFSVKELKVMAFLSFCEGCEVDIHLLFEKAGEPVLLAPKFGLEDGSHSNFDATLVLATML 855 ++ +K F + + L+R+ +EL + S L ++NS S Y + F FF Y T+S ++ C + +K+V + R +++ TV A K R ++ + +G+++++ + D Q L + +K + +++PR L +A S+ +E+T T P + L + + G+ ++L S +++++ P+E + G ++TF KELK L+F E + + F+ G+PV+L+ +ED +A +LAT++ Sbjct: 6 MTGGQVKVFGKAVQTLSRVSDELWLDPSEKGLALRSVNSCHSTYGYVLFSSMFFQHYQWSPFATMSDTDLPLNLNCKLAIKSVLPIFRCLNYLERSVEKCTVV---ARADKCRVVIQFFGKHGIKRTHNVYFQ---DSQPLKIIFEKSLCANILMIKPRLLTEAIALLTSNQEEVTFSVT-PGNFCLKS---LSGELLDLTSS----------VYSEMSFGPEE--FDFFQVGLDTEITFCFKELK--GILTFSEVMHAPLAIYFDFPGKPVVLS----VED---MLLEANFILATLV 272 The following BLAST results are available for this feature:
BLAST of Phvul.006G090000.5 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 7
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.006G090000.5_Pv_G19833_v2.1 >Phvul.006G090000.5_Pv_G19833_v2.1 ID=Phvul.006G090000.5_Pv_G19833_v2.1; Name=Phvul.006G090000.5_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=428bpback to top mRNA from alignment at Chr06:20158067..20161654- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.006G090000.5_Pv_G19833_v2.1 ID=Phvul.006G090000.5_Pv_G19833_v2.1; Name=Phvul.006G090000.5; organism=Phaseolus vulgaris; type=mRNA; length=3588bp; location=Sequence derived from: Chr06:20158067..20161654- (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr06:20158067..20161654- >Phvul.006G090000.5_Pv_G19833_v2.1 ID=Phvul.006G090000.5_Pv_G19833_v2.1; Name=Phvul.006G090000.5; organism=Phaseolus vulgaris; type=CDS; length=1284bp; location=Sequence derived from: Chr06:20158067..20161654- (Phaseolus vulgarisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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