Phvul.006G090000.5

Transcript Overview
NamePhvul.006G090000.5
Unique NamePhvul.006G090000.5_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr06supercontigChr06:20158067..20161654 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvR253Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL233Pisum sativum Cameor genome v1aPisum sativum
pspvL630Pisum sativum Cameor genome v1aPisum sativum
pvvuR536Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR555Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0293Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipvL0431Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL391Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crpvL392Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL235Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capvL360Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0730Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0911Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0485Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0717Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0781Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0956Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0959Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL215Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspvL437Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR510Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR532Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR572Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR582Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR563Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR573Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR483Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR523Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR470Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR488Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR649Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR663Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL217Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL328Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL133Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL403Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL225Cicer arietinum
carpvL338Cicer arietinum
ccapvL290Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL381Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR581Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR617Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR584Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR631Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR620Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR640Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR613Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR627Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR640Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR480Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR501Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR510Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR494Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR512Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.006G090000Phvul.006G090000_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G090000.5Phvul.006G090000.5_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.006G090000.5_Pv_G19833_v2.1Phvul.006G090000.5_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G090000.5.v2.1.CDS.9Phvul.006G090000.5.v2.1.CDS.9_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.006G090000.5.v2.1.CDS.8Phvul.006G090000.5.v2.1.CDS.8_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.006G090000.5.v2.1.CDS.7Phvul.006G090000.5.v2.1.CDS.7_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.006G090000.5.v2.1.CDS.6Phvul.006G090000.5.v2.1.CDS.6_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.006G090000.5.v2.1.CDS.5Phvul.006G090000.5.v2.1.CDS.5_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.006G090000.5.v2.1.CDS.4Phvul.006G090000.5.v2.1.CDS.4_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.006G090000.5.v2.1.CDS.3Phvul.006G090000.5.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.006G090000.5.v2.1.CDS.2Phvul.006G090000.5.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.006G090000.5.v2.1.CDS.1Phvul.006G090000.5.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G090000.5.v2.1.three_prime_UTR.1Phvul.006G090000.5.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G090000.5.v2.1.five_prime_UTR.1Phvul.006G090000.5.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


Homology
BLAST of Phvul.006G090000.5 vs. DB:Swiss
Match: RAD9A_MOUSE (Cell cycle checkpoint control protein RAD9A OS=Mus musculus OX=10090 GN=Rad9a PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.492e-19
Identity = 84/293 (28.67%), Postives = 138/293 (47.10%), Query Frame = 1
Query:    1 MEFTLSDNALKTFARCITCLARIGNELAIQASSSQLLFHTINSSRSAYECISFKPGFFDAYTVSG---NSVQCSVLLKAVCAVLRTPI---ANIDHLTVRLPDPDAPKVRWILDCYNGMRKSYWITCNVEPDIQHLSLDRQKFPSNFVVRPRDLNRLLANFQSSLQEITIIATEPSSLPLDAANEIG-GKAVELRSYMDPTKDSDT-LLHTQLWIDPKEEFLQYVHTGDPIDVTFSVKELKVMAFLSFCEGCEVDIHLLFEKAGEPVLLAPKFGLEDGSHSNFDATLVLATML 855
            M+  ++   +K   + +  L+RIG+EL ++     L   T+NSSRSAY C  F P FF  Y  +    + ++C +L+KA  +V R+      +++   + L    +  V   L C  G++K++ ++      +Q +  D    P       R L   + +F  +L E+T+               IG G+ V LRSY +   DS +  + T+  I   +E  Q +H  + I VTF +KE +    LSF E   + + + F+  G PV+    F +ED   S  DA  VLAT+L
Sbjct:    1 MKCLITGGNVKVLGKAVHSLSRIGDELYLEPLKDGLSLRTVNSSRSAYACFLFAPLFFQQYQAASPGQDLLRCKILMKAFLSVFRSLAIVEKSVEKCCISLSGSHSHLVVQ-LHCKYGVKKTHNLSFQDCESLQAV-FDPASCPHLLRTPARVLAEAVLSFPLALTEVTL--------------GIGRGRRVILRSYQEEEADSTSKAMVTETSIG--DEDFQQLHAPEGIAVTFCLKEFR--GLLSFAESANLPLTIHFDVPGRPVI----FTIED---SLLDAHFVLATLL 266          
BLAST of Phvul.006G090000.5 vs. DB:Swiss
Match: RAD9A_HUMAN (Cell cycle checkpoint control protein RAD9A OS=Homo sapiens OX=9606 GN=RAD9A PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.758e-17
Identity = 90/375 (24.00%), Postives = 164/375 (43.73%), Query Frame = 1
Query:    1 MEFTLSDNALKTFARCITCLARIGNELAIQASSSQLLFHTINSSRSAYECISFKPGFFDAY---TVSGNSVQCSVLLKAVCAVLRTPI---ANIDHLTVRLPDPDAPKVRWILDCYNGMRKSYWITCNVEPDIQHLSLDRQKFPSNFVVRPRDLNRLLANFQSSLQEITIIATEPSSLPLDAANEIG-GKAVELRSYMDPTKDSDT-LLHTQLWIDPKEEFLQYVHTGDPIDVTFSVKELKVMAFLSFCEGCEVDIHLLFEKAGEPVLLAPKFGLEDGSHSNFDATLVLATMLISQLHEGAVSEP----PAGATRAHPNTEERNASYMEQENCRADASSELPSDHTRIWSDLSASAF----KSITPQAERQAQGE 1077
            M+  ++   +K   + +  L+RIG+EL ++     L   T+NSSRSAY C  F P FF  Y   T   + ++C +L+K+  +V R+       ++   + L +  + ++   L C  G+RK++ ++      +Q +  D    P       R L   +  F  +L E+T+               IG G+ V LRSY +   DS    + T++ +   EE  Q +   + + +TF +KE +    LSF E   +++ + F+  G P +   K  L DG         VLAT+  +  H   +  P    P    +AH      + +  + ++      + + ++ +R+   +S S      KS  P +E + + E
Sbjct:    1 MKCLVTGGNVKVLGKAVHSLSRIGDELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLLRCKILMKSFLSVFRSLAMLEKTVEKCCISL-NGRSSRLVVQLHCKFGVRKTHNLSFQDCESLQAV-FDPASCPHMLRAPARVLGEAVLPFSPALAEVTL--------------GIGRGRRVILRSYHEEEADSTAKAMVTEMCLG--EEDFQQLQAQEGVAITFCLKEFR--GLLSFAESANLNLSIHFDAPGRPAIFTIKDSLLDGH-------FVLATLSDTDSHSQDLGSPERHQPVPQLQAHSTPHPDDFANDDIDSYMIAMETTIGNEGSRVLPSISLSPGPQPPKSPGPHSEEEDEAE 348          
BLAST of Phvul.006G090000.5 vs. DB:Swiss
Match: RAD9A_MACFA (Cell cycle checkpoint control protein RAD9A OS=Macaca fascicularis OX=9541 GN=RAD9A PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.246e-16
Identity = 77/293 (26.28%), Postives = 131/293 (44.71%), Query Frame = 1
Query:   37 FARCITCLARIGNELAIQASSSQLLFHTINSSRSAYECISFKPGFFDAY---TVSGNSVQCSVLLKAVCAVLRTPI---ANIDHLTVRLPDPDAPKVRWILDCYNGMRKSYWITCNVEPDIQHLSLDRQKFPSNFVVRPRDLNRLLANFQSSLQEITIIATEPSSLPLDAANEIG-GKAVELRSYMDPTKDSDT-LLHTQLWIDPKEEFLQYVHTGDPIDVTFSVKELKVMAFLSFCEGCEVDIHLLFEKAGEPVLLAPKFGLEDGSHSNFDATLVLATMLISQLHEGAVSEP 891
              + +  L+RIG+EL ++     L   T+NSSRSAY C  F P FF  Y   T   + ++C +L+K+  +V R+       ++   + L +  + ++   L C  G+RK++ ++      +Q +  D    P       R L   +  F  +L E+T+               IG G+ V LRSY +   DS    + T++ +   EE  Q +   + + +TF +KE +    LSF E   +++ + F+  G P +   K  L DG         VLAT+  +  H   +  P
Sbjct:    2 LGKAVHSLSRIGDELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLLRCKILMKSFLSVFRSLAMLEKTVEKCCISL-NGRSSRLVVQLHCKFGVRKTHNLSFQDCESLQAV-FDPASCPHMLRAPARVLGEAVLPFPPALAEVTL--------------GIGRGRRVILRSYHEEEADSTAKAMVTEMCLG--EEDFQQLQAQEGVAITFCLKEFR--GLLSFAESANLNLSIHFDAPGRPAIFTIKDSLLDGH-------FVLATLSDTDSHSQDLGSP 267          
BLAST of Phvul.006G090000.5 vs. DB:Swiss
Match: RAD9B_HUMAN (Cell cycle checkpoint control protein RAD9B OS=Homo sapiens OX=9606 GN=RAD9B PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 3.452e-15
Identity = 68/277 (24.55%), Postives = 126/277 (45.49%), Query Frame = 1
Query:    1 MEFTLSDNALKTFARCITCLARIGNELAIQASSSQLLFHTINSSRSAYECISFKPGFFDAY------TVSGNS------VQCSVLLKAVCAVLRTPIA---NIDHLTVRLPDPDAPKVRWILDCYNGMRKSYWITCNVEPDIQHLSLDRQKFPSNFVVRPRDLNRLLANFQSSLQEITIIATEPSSLPLDAANEIGGKAVELRSYMDPTKDSDTLLHTQLWIDPKEEFLQYVHTGDPIDVTFSVKELKVMAFLSFCEGCEVDIHLLFEKAGEPVLLA 786
            ++  +S + +K F + +  L+RI +E  +  S   L    +NSSRSAY C+ F P FF  Y       +S N       ++C + +K++  + R   +   NI+   +     D  KV       +G+++++ I C  E     +  D+    +  +++PR L   +  F SS +E+T+  T P +  L ++NE              + D    +H+++++   E    +   G   ++TF  KELK    L+F E     I + F+  G+P+ L+
Sbjct:    2 LKCVMSGSQVKVFGKAVQALSRISDEFWLDPSKKGLALRCVNSSRSAYGCVLFSPVFFQHYQWSALVKMSENELDTTLHLKCKLGMKSILPIFRCLNSLERNIEKCRI-FTRSDKCKVVIQFFYRHGIKRTHNI-CFQESQPLQVIFDKNVCTNTLMIQPRLLADAIVLFTSSQEEVTLAVT-PLNFCLKSSNE-------------ESMDLSNAVHSEMFVGSDE--FDFFQIGMDTEITFCFKELK--GILTFSEATHAPISIYFDFPGKPLALS 258          
BLAST of Phvul.006G090000.5 vs. DB:Swiss
Match: RAD9B_BOVIN (Cell cycle checkpoint control protein RAD9B OS=Bos taurus OX=9913 GN=RAD9B PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.253e-14
Identity = 72/289 (24.91%), Postives = 132/289 (45.67%), Query Frame = 1
Query:   25 ALKTFARCITCLARIGNELAIQASSSQLLFHTINSSRSAYECISFKPGFFDAYTVSGN----------SVQCSVLLKAVCAVLR---TPIANIDHLTVRLPDPDAPKVRWILDCYNGMRKSYWITCNVEPDIQHLSLDRQKFPSNFVVRPRDLNRLLANFQSSLQEITIIATEPSSLPLDAANEIGGKAVELRSYMDPTKDSDTLLHTQLWIDPKEEFLQYVHTGDPIDVTFSVKELKVMAFLSFCEGCEVDIHLLFEKAGEPVLLAPKFGLEDGSHSNFDATLVLATM 852
             ++ F + I  L+R+ +EL +  S   L   ++NS RSAY C+ F P FF  Y  S +          ++ C + +K++  + R   +   N++   +     D  KV     C +G++K + +       +Q +   +    +  V++PR L   +  F SS +E+T+  T P  + + ++NE           MD T DS   +++++++ P E    +   G   ++TF  KELK    L+F E     I + F+  G+P+ L+    L        +A  +LAT+
Sbjct:   28 VVEVFGKAIQALSRVSDELWLDPSEKGLALRSVNSCRSAYGCVLFSPVFFQHYQWSASVKMNDTDIILNLNCRLGMKSILPIFRCLNSLEKNVEKCKI-FTRSDKCKVVIQFFCRHGIKKIHNVCFQGSRPLQVI-FQKNMCANTLVIQPRVLAEAIVLFTSSQEEVTLAVT-PLKVCIKSSNE---------ESMDLT-DS---VYSEMFVGPDE--FDFFQIGIDTEITFCFKELK--GVLTFSEAIHAPIAIHFDFPGKPMALSIDDML-------LEANFILATL 289          
BLAST of Phvul.006G090000.5 vs. DB:Swiss
Match: RAD9_SCHOT (DNA repair protein rad9 OS=Schizosaccharomyces octosporus OX=4899 GN=rad9 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.470e-12
Identity = 69/320 (21.56%), Postives = 131/320 (40.94%), Query Frame = 1
Query:    1 MEFTLSDNALKTFARCITCLARIGNELAIQASSSQLLFHTINSSRSAYECISFKPGFFDAYTVSGN----------SVQCSVLLKAVCAVLRTPIAN-------------------------IDHLTVRLPDPDAPKVRWILDCYNGMRKSYWITCNVEPDIQHLSLDRQKFPSNFVVRPRDLNRLLANFQSSLQEITIIATEPSSLPLDAANEIGGKAVELRSYMDPTKDSDTLLHTQLWIDPKEEFLQYVHTGDPIDVTFSVKELKVMAFLSFCEGCEVDIHLLFEKAGEPVLLAPKFGLEDGSHSNFDATLVLATML 855
            MEF +S+  L+  +R    L+RI + +  + +  QL+  T+NSSRS +  ++    FFD +T   +          +V+ S  +K + ++ R  I                           ++++ +++      +V +  +C +G+ K+Y I    +    H   D+    +N+ +  + L  L+ +F    +E+TI   +   L      E+      L+    PT+       T + ID KE   + V   + I +T S+KE +    L   E     I   +  +G+P L    F    G     +A  +LAT++
Sbjct:    1 MEFVVSNTNLRDLSRIFLNLSRIDDAVNWEINKDQLILTTLNSSRSGFGKVTLTKKFFDKFTFHPDTLFLTGFVSPTVRLSTQIKPILSIFRNKIFESTLLVNNNLNTNAGAAESSSKKNVVVENIQMQITSGKECRVIFKFNCKHGVVKTYKIAYE-QTQTLHAVFDKASCHNNWQINSKILKDLIEHFGQKTEELTIQPVQGRVLLTSFTEEVVHNKDVLKQ---PTQ-------TTVSIDGKE--FEQVSLNEGIIITLSLKEFRAAVLL--AESLGTSIASYYSVSGKPAL----FTFNKGKFMEIEAQFILATVM 301          
BLAST of Phvul.006G090000.5 vs. DB:Swiss
Match: RAD9B_MOUSE (Cell cycle checkpoint control protein RAD9B OS=Mus musculus OX=10090 GN=Rad9b PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 3.113e-8
Identity = 68/298 (22.82%), Postives = 137/298 (45.97%), Query Frame = 1
Query:   13 LSDNALKTFARCITCLARIGNELAIQASSSQLLFHTINSSRSAYECISFKPGFFDAY------TVSGN----SVQCSVLLKAVCAVLRTPIA---NIDHLTVRLPDPDAPKVRWILDCY--NGMRKSYWITCNVEPDIQHLSLDRQK--FPSNFVVRPRDLNRLLANFQSSLQEITIIATEPSSLPLDAANEIGGKAVELRSYMDPTKDSDTLLHTQLWIDPKEEFLQYVHTGDPIDVTFSVKELKVMAFLSFCEGCEVDIHLLFEKAGEPVLLAPKFGLEDGSHSNFDATLVLATML 855
            ++   +K F + +  L+R+ +EL +  S   L   ++NS  S Y  + F   FF  Y      T+S      ++ C + +K+V  + R       +++  TV      A K R ++  +  +G+++++ +      D Q L +  +K    +  +++PR L   +A   S+ +E+T   T P +  L +   + G+ ++L S           +++++   P+E    +   G   ++TF  KELK    L+F E     + + F+  G+PV+L+    +ED      +A  +LAT++
Sbjct:    6 MTGGQVKVFGKAVQTLSRVSDELWLDPSEKGLALRSVNSCHSTYGYVLFSSMFFQHYQWSPFATMSDTDLPLNLNCKLAIKSVLPIFRCLNYLERSVEKCTVV---ARADKCRVVIQFFGKHGIKRTHNVYFQ---DSQPLKIIFEKSLCANILMIKPRLLTEAIALLTSNQEEVTFSVT-PGNFCLKS---LSGELLDLTSS----------VYSEMSFGPEE--FDFFQVGLDTEITFCFKELK--GILTFSEVMHAPLAIYFDFPGKPVVLS----VED---MLLEANFILATLV 272          
The following BLAST results are available for this feature:
BLAST of Phvul.006G090000.5 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 7
Match NameE-valueIdentityDescription
RAD9A_MOUSE6.492e-1928.67Cell cycle checkpoint control protein RAD9A OS=Mus... [more]
RAD9A_HUMAN1.758e-1724.00Cell cycle checkpoint control protein RAD9A OS=Hom... [more]
RAD9A_MACFA3.246e-1626.28Cell cycle checkpoint control protein RAD9A OS=Mac... [more]
RAD9B_HUMAN3.452e-1524.55Cell cycle checkpoint control protein RAD9B OS=Hom... [more]
RAD9B_BOVIN2.253e-1424.91Cell cycle checkpoint control protein RAD9B OS=Bos... [more]
RAD9_SCHOT3.470e-1221.56DNA repair protein rad9 OS=Schizosaccharomyces oct... [more]
RAD9B_MOUSE3.113e-822.82Cell cycle checkpoint control protein RAD9B OS=Mus... [more]
back to top
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.70.10.10coord: 2..284
e-value: 3.0E-66
score: 225.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 400..427
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 311..330
NoneNo IPR availableSUPERFAMILY55979DNA clampcoord: 9..119
IPR007268Rad9/Ddc1PFAMPF04139Rad9coord: 13..284
e-value: 1.4E-69
score: 234.4
IPR026584Rad9PIRSFPIRSF009303RAD9coord: 1..423
e-value: 2.5E-92
score: 308.0

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.006G090000.5_Pv_G19833_v2.1

>Phvul.006G090000.5_Pv_G19833_v2.1 ID=Phvul.006G090000.5_Pv_G19833_v2.1; Name=Phvul.006G090000.5_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=428bp
MEFTLSDNALKTFARCITCLARIGNELAIQASSSQLLFHTINSSRSAYEC
ISFKPGFFDAYTVSGNSVQCSVLLKAVCAVLRTPIANIDHLTVRLPDPDA
PKVRWILDCYNGMRKSYWITCNVEPDIQHLSLDRQKFPSNFVVRPRDLNR
LLANFQSSLQEITIIATEPSSLPLDAANEIGGKAVELRSYMDPTKDSDTL
LHTQLWIDPKEEFLQYVHTGDPIDVTFSVKELKVMAFLSFCEGCEVDIHL
LFEKAGEPVLLAPKFGLEDGSHSNFDATLVLATMLISQLHEGAVSEPPAG
ATRAHPNTEERNASYMEQENCRADASSELPSDHTRIWSDLSASAFKSITP
QAERQAQGETVLNGDGGREIQRISTMQISRSDVLRDNVQAISQHHRSNWI
AAEEDDEDEEEENEQYIQATPPYYEEH*
back to top

mRNA from alignment at Chr06:20158067..20161654-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.006G090000.5_Pv_G19833_v2.1 ID=Phvul.006G090000.5_Pv_G19833_v2.1; Name=Phvul.006G090000.5; organism=Phaseolus vulgaris; type=mRNA; length=3588bp; location=Sequence derived from: Chr06:20158067..20161654- (Phaseolus vulgaris
ACACATGATACAACTGTTAATCCTGGCCTTCTTCCCGCCAAGGCGCGAAC CCTAAATAAGCGCGTTCCGCATTGTGGTGTGTCGAACGAACTATGGAATT CACGTTAAGCGATAACGCTCTCAAAACCTTTGCGCGATGCATCACTTGTC TCGCACGCATCGGAAACGAGCTCGCGATTCAAGCCTCTTCCTCTCAGGTA ACAATAACGTTTCTCTGCAACTCCAATTCTTGCTTTCTTCGTTTCCGTTT TTCACCACTTCTCAATCCAAACGGAATTTCGTTTAATGATAATTTCGAAC CAGATTAAGAGATATGGGAATCGCGCTTTGATTATGGCGCCACAACTATT TCTGTTTTCTCACGTGATTTGCTCCTTACACTTTAGTTTGGGTTTTGCGG GCATAATTAGTGCTTTAAAGCGAACTGGAGAATGTTGAATGTTGATTGTT TAGGACTGTTATGCACTTACGTACTACTAATTTTTGTTTCTTGATTTGTT ATTACAGCTTCTTTTCCACACTATTAATTCGTCACGTTCTGCCTATGAAT GCATTTCTTTCAAGCCTGGTTTCTTTGACGCGTATACTGTTTCTGGTAAT TCCGTGCAATGTAGTGTGCTTCTGAAGGTGCGCAGCGGTCTTTTCTCACT TTAAATTAAATGAGTTTTGCAAATAATAAATTCATTCTCACATACTTTGA TTAGGCTGTTTGTGCTGTTCTAAGGACACCTATTGCGAATATTGATCATT TGACTGTGAGACTGCCTGATCCAGATGCTCCCAAAGTGCGGTGGATTTTG GACTGCTATAATGGTAAATTGCTTATTTAGTGTATACACCATCTCTGGTG GTTGCTCGACAAGGGAAAGTTATAGTACAAGAATTGCTATTGGATTTAAT TTGGTTACCATGGGAGACCAATCATGTAGTTGATTTCTTAATTAAAACTA GCCACATTTTGAACTTGGCCAATGTTAAGGAAACATGCTTTTAATACTGA TGGCATGACCCCCTTTTTTTCACGCGGGTTAGGTGTAACATTGAATGTTA GCTTCTGCATGTCAACTGCGTCTTTTATCTTGGTGAGCAGCTAAGGTATT TGTTACTGCCCCTCACTATACGTCACTTCCTCTGCATATTTTGAAATTTG CTGCGTATAAATGTTCTAAAAGTCTGTAGTAGTAATTTTTTTCTTAAATG AGCTTAAGAACATTGCTGTAACTTCAATTCATTATACTTAAATATCCATT AATGATTGGATTTACTGTGTAAATGGTGCTAGGCATCCCATCATTTATGC TGCTATTTTCTCACCATTTAACAATGTGTGTGTTCCAACACACGTCTGAC TCTAATGTGGATTAAAAAGGATACGCTTTTCATTGACTGCAGGTATGAGA AAAAGCTATTGGATTACTTGCAATGTAGAACCTGACATACAACACTTGTC TCTTGATAGGCAAAAATTTCCCAGCAACTTTGTTGTGAGGCCTCGAGATC TGAACAGGCTACTTGCTAATTTTCAGTCCTCTCTTCAAGAGATTACTATC ATTGCAACAGAACCTTCTTCTCTACCTCTTGATGCTGCAAATGAAATTGG TGGAAAGGCGGTTGAACTTCGAAGTTATATGGACCCAACCAAAGGTAAAG AGGATTCTTTTGTTGGTAGCTTTATTGCAAACTGTATTTATTTATGTGTG TGGATGTCATGGCAGACAGTGATACATTGCTGCACACCCAACTGTGGATA GATCCTAAAGAAGAATTTTTGCAGTATGTTCATACTGGAGATCCAATAGA TGTGACTTTCAGTGTAAAAGAACTGAAGGTAATGGTAAGCCTAGGGTTTT GTTTGTGAATTTTTTGTTGACATAGGTAAGTTTAGCAAATGTTGTTAGGG ATTTCAGTCAAATGATATCATGTTTTTTAAATTTTATTATGTTATCTTTC AGAATTTGTTATTCTTTCTTTCTTCCATTCTACGATGAATTAGCGTATTA AAATACACTTGGTCTTTTTCTCATCAAACTGCAGGCATTTCTTTCATTTT GTGAGGGCTGTGAAGTTGACATCCATTTGCTTTTTGAGAAAGCTGGCGAG TAAGATGTATTTAGTATCTTACACAGTTTATCCTCAATGGCATGGTTGTC TTTTGAGTGCAAATGCATACCTTCTCTTTTTAAGTTATGGCATCGTACAT ATTGCTTTGATAAGTGTACTTATCATAGATTAAACCCCAAATAGAACTAA GGAAATGTGTAAAGATGTAAAGACAAATTGTCCTGGATTTTATTGTGGAG AAATAAGCTACACACTCTCAAATAAATAGACCTATTTTCTTGCATTCTGG ATTTTACTTTTATGTTTGTCTTTTGTAGTTACTAGTTGTTATTTACTTTA ATTCTTGTATGATACTGTGTTTGGCAAGCAGACCTGTTCTTTTGGCACCT AAGTTCGGTTTGGAAGATGGGTCTCACTCAAATTTTGATGCCACCCTTGT GCTGGCAACCATGTTAATATCTCAGCTTCATGAAGGGGCTGTCTCAGAAC CTCCTGCGGGGGCCACCAGAGCACACCCTAATACTGAAGAAAGAAATGCA TCTTACATGGAGCAAGAGAACTGCAGAGCAGATGCATCATCAGAGCTTCC ATCTGATCACACCCGAATTTGGTCGGACCTCTCAGGTAGTTTCAATATTT GGATTGGATAATTTTTTGTTGATCAAAATTCTCATACTTTTTCATTTTGC AGCAAGTGCATTTAAAAGCATTACTCCTCAAGCAGAGCGGCAGGCACAAG GAGAAACAGTTTTGAATGGTGATGGTGGAAGAGAAATTCAAAGAATTAGC ACAATGCAAATTTCAAGATCAGGTGCAGGAAATAATCCCATTGACTCCAA TTTGTATCCTTGATGCTTCTATTTGCGCCAATATCTTAGGACTTCTATCA TGATTTACTTTACCCCATGATGCTGCGGCCTCAAATGTTATTCTCATTTC TTTCTTATATCCATTACCTGGTTGAATTTTCAGAACAGATAAAAAGTATG GGATGCTCAAACCAGACACTAGGAATGGAACCTTATTTGAATTTTACACT TATTTGTCTGTTTGAAACCCTTTAATTTAAAGCAAATTGCTATCTTCATC CTCTGTTAGTCTCTCTACCTTAACTGATATCTCAGACCAACTGAAATGAA TCATGGATTAGAGCCTCAAGGTTAGTTAGTTTGGCTTGTTAACGAGCTTG CCAAATGCTGTTGTAGTTCCATCAGCAACTAATATAATTGGTACATTTTA TTCAGATGTGCTGCGAGATAATGTTCAAGCAATTTCACAACATCATCGCA GTAATTGGATAGCGGCTGAAGAGGATGATGAAGACGAAGAGGAGGAAAAT GAGCAGTACATTCAGGCAACACCGCCATACTATGAAGAGCATTAATTCTG AGAACTCTACTGTAATGGTTTTCCTTTATCTCGACAACCTGCATGTGGTG ATTCTCCTAGGTTGCCTTGTCTCTTAATTTTTTTTCTAATTGATCCTGTA ATCCATCATTTAAAGTGATTGAATAGCCGTATATTGCT
back to top

Coding sequence (CDS) from alignment at Chr06:20158067..20161654-

>Phvul.006G090000.5_Pv_G19833_v2.1 ID=Phvul.006G090000.5_Pv_G19833_v2.1; Name=Phvul.006G090000.5; organism=Phaseolus vulgaris; type=CDS; length=1284bp; location=Sequence derived from: Chr06:20158067..20161654- (Phaseolus vulgaris
ATGGAATTCACGTTAAGCGATAACGCTCTCAAAACCTTTGCGCGATGCAT
CACTTGTCTCGCACGCATCGGAAACGAGCTCGCGATTCAAGCCTCTTCCT
CTCAGCTTCTTTTCCACACTATTAATTCGTCACGTTCTGCCTATGAATGC
ATTTCTTTCAAGCCTGGTTTCTTTGACGCGTATACTGTTTCTGGTAATTC
CGTGCAATGTAGTGTGCTTCTGAAGGCTGTTTGTGCTGTTCTAAGGACAC
CTATTGCGAATATTGATCATTTGACTGTGAGACTGCCTGATCCAGATGCT
CCCAAAGTGCGGTGGATTTTGGACTGCTATAATGGTATGAGAAAAAGCTA
TTGGATTACTTGCAATGTAGAACCTGACATACAACACTTGTCTCTTGATA
GGCAAAAATTTCCCAGCAACTTTGTTGTGAGGCCTCGAGATCTGAACAGG
CTACTTGCTAATTTTCAGTCCTCTCTTCAAGAGATTACTATCATTGCAAC
AGAACCTTCTTCTCTACCTCTTGATGCTGCAAATGAAATTGGTGGAAAGG
CGGTTGAACTTCGAAGTTATATGGACCCAACCAAAGACAGTGATACATTG
CTGCACACCCAACTGTGGATAGATCCTAAAGAAGAATTTTTGCAGTATGT
TCATACTGGAGATCCAATAGATGTGACTTTCAGTGTAAAAGAACTGAAGG
TAATGGCATTTCTTTCATTTTGTGAGGGCTGTGAAGTTGACATCCATTTG
CTTTTTGAGAAAGCTGGCGAACCTGTTCTTTTGGCACCTAAGTTCGGTTT
GGAAGATGGGTCTCACTCAAATTTTGATGCCACCCTTGTGCTGGCAACCA
TGTTAATATCTCAGCTTCATGAAGGGGCTGTCTCAGAACCTCCTGCGGGG
GCCACCAGAGCACACCCTAATACTGAAGAAAGAAATGCATCTTACATGGA
GCAAGAGAACTGCAGAGCAGATGCATCATCAGAGCTTCCATCTGATCACA
CCCGAATTTGGTCGGACCTCTCAGCAAGTGCATTTAAAAGCATTACTCCT
CAAGCAGAGCGGCAGGCACAAGGAGAAACAGTTTTGAATGGTGATGGTGG
AAGAGAAATTCAAAGAATTAGCACAATGCAAATTTCAAGATCAGATGTGC
TGCGAGATAATGTTCAAGCAATTTCACAACATCATCGCAGTAATTGGATA
GCGGCTGAAGAGGATGATGAAGACGAAGAGGAGGAAAATGAGCAGTACAT
TCAGGCAACACCGCCATACTATGAAGAGCATTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR007268Rad9/Ddc1
IPR026584Rad9
Vocabulary: Cellular Component
TermDefinition
GO:0030896checkpoint clamp complex
Vocabulary: Biological Process
TermDefinition
GO:0000077DNA damage checkpoint signaling
GO:0006281DNA repair