Phvul.006G096600.2

Transcript Overview
NamePhvul.006G096600.2
Unique NamePhvul.006G096600.2_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr06supercontigChr06:20735833..20738208 +Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvR252Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL233Pisum sativum Cameor genome v1aPisum sativum
pspvL630Pisum sativum Cameor genome v1aPisum sativum
pvvuR536Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR555Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0292Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipvL0431Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL391Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crpvL392Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL235Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capvL360Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0730Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0485Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0717Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0781Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0959Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0961Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1308Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL215Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspvL315Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR510Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR532Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR572Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR582Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR563Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR573Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR483Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR523Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR470Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR488Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR649Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR663Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL217Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL328Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL133Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL403Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL225Cicer arietinum
carpvL338Cicer arietinum
ccapvL290Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL381Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR581Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR617Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR583Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR631Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR620Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR640Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR627Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR640Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR501Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR508Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR494Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR512Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vigan.08G166500.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-XM_004495709.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Cr_09140.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-XM_014663259.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
XM_058923589.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vfaba.Hedin2.R1.3g084320.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-XM_014657295.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Cc_v2.0_08379.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vfaba.Tiffany.R1.3g069680.1Vicia faba cv. Tiffany genome v1.0Vicia faba
evm.model.Chr07.1309Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vum_05G01172.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Va09G046860.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigst.05G115500.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vigun07g151200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun06g107200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Ca_09231.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Ca_03722Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-KK1_007091Cajanus cajan Asha genome v1.0Cajanus cajan
Vum_08G01331.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigun06g107200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Va02G052900.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
LR48_mrnaVigan10g094300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Psat06G0400000-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Cc_v2.0_03993.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
evm.model.Chr06.1186.1.6211316fVigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-TanjilR_15564Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Psat6g148160.1Pisum sativum Cameor genome v1aPisum sativum
Vigan.05G145000.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigst.08G129200.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vigun07g151200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
jg3170.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr06.1530Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.006G096600Phvul.006G096600_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G096600.2Phvul.006G096600.2_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.006G096600.2_Pv_G19833_v2.1Phvul.006G096600.2_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G096600.2.v2.1.five_prime_UTR.1Phvul.006G096600.2.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G096600.2.v2.1.CDS.1Phvul.006G096600.2.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.006G096600.2.v2.1.CDS.2Phvul.006G096600.2.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.006G096600.2.v2.1.CDS.3Phvul.006G096600.2.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.006G096600.2.v2.1.CDS.4Phvul.006G096600.2.v2.1.CDS.4_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G096600.2.v2.1.three_prime_UTR.1Phvul.006G096600.2.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


Homology
BLAST of Phvul.006G096600.2 vs. DB:Swiss
Match: ACP4_ARATH (Acyl carrier protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ACP4 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.123e-38
Identity = 76/136 (55.88%), Postives = 96/136 (70.59%), Query Frame = 1
Query:   13 ALSGTSLSMRSL-TSQTQAFTSLSGQRSGLISSFGRKNVSFNFQPRQIRLQISCAAKADTVDKVCEIVKKQLAVAEGETVTAESTFQKLGADSLDTVEIVMALEEAFGIAIEEESAQTITTVQQAADLIEDIIDKK 417
            +LS TSLS ++  T+ +Q     S  +S    +FGR    F    + +RLQISCAAKA+TV KV +IVK+QLA+A    +TAES F  LGADSLDTVEIVMALEE F I++EE  AQ ITT+Q+AADLIED++ KK
Sbjct:    3 SLSTTSLSFKAPSTTISQVLRKASSSQSV---TFGR----FTSSTKSLRLQISCAAKAETVQKVSDIVKEQLALAADVPLTAESKFSALGADSLDTVEIVMALEEKFNISVEESDAQNITTIQEAADLIEDLVQKK 131          
BLAST of Phvul.006G096600.2 vs. DB:Swiss
Match: ACP1_CASGL (Acyl carrier protein 1, chloroplastic OS=Casuarina glauca OX=3522 GN=ACP1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.482e-38
Identity = 75/139 (53.96%), Postives = 95/139 (68.35%), Query Frame = 1
Query:   13 ALSGTSLSMRSLTSQTQAFTSLSGQRSGLISSFGRKNVSFNFQP---RQIRLQISCAAKADTVDKVCEIVKKQLAVAEGETVTAESTFQKLGADSLDTVEIVMALEEAFGIAIEEESAQTITTVQQAADLIEDIIDKKS 420
            +++GTS+SM S  + + A + +S  RS  +   G+     +F P   R  R  + CAAK +TV+KVC IVKKQLA+ +   VT ES F  LGADSLDTVEIVM LEE FGI +EEESAQ+I TVQ AADLIE +I+KKS
Sbjct:    3 SVTGTSISMASFKA-SLAPSRVSNLRSVSLPIKGK-----SFAPLRMRSARFVVCCAAKPETVEKVCAIVKKQLALPDDSAVTGESKFATLGADSLDTVEIVMGLEEEFGINVEEESAQSIATVQDAADLIEKLIEKKS 135          
BLAST of Phvul.006G096600.2 vs. DB:Swiss
Match: ACP5_BRANA (Acyl carrier protein, chloroplastic OS=Brassica napus OX=3708 GN=ACL1.C1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 8.257e-38
Identity = 73/139 (52.52%), Postives = 96/139 (69.06%), Query Frame = 1
Query:    1 MATNALSGTSLSMRSLTSQTQAFTSLSGQRSGLISSFGRKNVSFNFQPRQIRLQISCAAKADTVDKVCEIVKKQLAVAEGETVTAESTFQKLGADSLDTVEIVMALEEAFGIAIEEESAQTITTVQQAADLIEDIIDKK 417
            MAT   +  S+   SL + T+    +S Q+  L+S+ GR N+SFN    + RL ISCAAK +TV+KV EIVKKQL++ + + V AE+ F  LGADSLDTVEIVM LEE FGI + EE AQ I TV+QAA+LIE+++  K
Sbjct:    1 MATTFSASVSMQATSLATTTR----ISFQKPVLVSNHGRTNLSFNLS--RTRLSISCAAKQETVEKVSEIVKKQLSLKDDQQVVAETKFVDLGADSLDTVEIVMGLEEEFGIQMAEEKAQKIATVEQAAELIEELMQAK 133          
BLAST of Phvul.006G096600.2 vs. DB:Swiss
Match: ACP1_ARATH (Acyl carrier protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ACP1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.098e-36
Identity = 69/128 (53.91%), Postives = 91/128 (71.09%), Query Frame = 1
Query:   43 SLTSQTQAFTSLSGQRSGLISSFGRKNVSFNFQPRQI---RLQISCAAKADTVDKVCEIVKKQLAVAEGETVTAESTFQKLGADSLDTVEIVMALEEAFGIAIEEESAQTITTVQQAADLIEDIIDKK 417
            SL +   A T +S Q+  LIS+ G+ N+SFN + R I   RL +SCAAK +T++KV  IVKKQL++   + V AE+ F  LGADSLDTVEIVM LEE F I + EE AQ I TV+QAA+LIE++I++K
Sbjct:   10 SLQTSCLATTRISFQKPALISNHGKTNLSFNLR-RSIPSRRLSVSCAAKQETIEKVSAIVKKQLSLTPDKKVVAETKFADLGADSLDTVEIVMGLEEEFNIQMAEEKAQKIATVEQAAELIEELINEK 136          
BLAST of Phvul.006G096600.2 vs. DB:Swiss
Match: ACP2_HORVU (Acyl carrier protein 2, chloroplastic OS=Hordeum vulgare OX=4513 GN=ACL1.2 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 3.658e-36
Identity = 61/104 (58.65%), Postives = 78/104 (75.00%), Query Frame = 1
Query:  103 SSFGRKNVSFNFQPRQIRLQISCAAKADTVDKVCEIVKKQLAVAEGETVTAESTFQKLGADSLDTVEIVMALEEAFGIAIEEESAQTITTVQQAADLIEDIIDK 414
            S+  + NVSF  QP   R  + CAAK +TV+KVC+IVK QLA+++   V+  STF  LGADSLDTVEIVM LEEAFGI++EE SAQTI TV+ AA+LI+ ++ K
Sbjct:   26 SALRKDNVSFRLQPVPQRFSVCCAAKKETVEKVCDIVKSQLALSDDTEVSGSSTFADLGADSLDTVEIVMGLEEAFGISVEESSAQTIATVEDAANLIDSLVGK 129          
BLAST of Phvul.006G096600.2 vs. DB:Swiss
Match: ACP3_ARATH (Acyl carrier protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ACP3 PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.750e-35
Identity = 60/106 (56.60%), Postives = 80/106 (75.47%), Query Frame = 1
Query:  106 SFG-RKNVSFNFQPRQIRLQISCAAKADTVDKVCEIVKKQLAVAEGETVTAESTFQKLGADSLDTVEIVMALEEAFGIAIEEESAQTITTVQQAADLIEDIIDKKS 420
            S+G R N+SFN +    RL + CAAK +TVDKVC +V+KQL++ E + +TA + F  LGADSLDTVEIVM LEE FGI + EE AQ+I TV+QAA LIE+++ +K+
Sbjct:   30 SYGSRSNLSFNLRQLPTRLTVYCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGLEEEFGIEMAEEKAQSIATVEQAAALIEELLLEKA 135          
BLAST of Phvul.006G096600.2 vs. DB:Swiss
Match: ACP2_ARATH (Acyl carrier protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ACP2 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 2.089e-34
Identity = 64/123 (52.03%), Postives = 87/123 (70.73%), Query Frame = 1
Query:   52 SQTQAFTSLSGQRSGLISSFGRKNVSFNFQPRQIRLQISCAAKADTVDKVCEIVKKQLAVAEGETVTAESTFQKLGADSLDTVEIVMALEEAFGIAIEEESAQTITTVQQAADLIEDIIDKKS 420
            SQ ++F++  G+RS L         SFN +    RL +SCAAK +TVDKVC +V+KQL++ E + +TA + F  LGADSLDTVEIVM LEE FGI + EE AQ+I TV+QAA LIE+++ +K+
Sbjct:   24 SQVKSFSN--GRRSSL---------SFNLRQLPTRLTVSCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGLEEEFGIEMAEEKAQSIATVEQAAALIEELLFEKA 135          
BLAST of Phvul.006G096600.2 vs. DB:Swiss
Match: ACP3_HORVU (Acyl carrier protein 3, chloroplastic OS=Hordeum vulgare OX=4513 GN=ACL1.3 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 3.206e-34
Identity = 64/117 (54.70%), Postives = 75/117 (64.10%), Query Frame = 1
Query:   73 SLSGQRSGLISSFGRKNVSFNFQPRQIRLQISCAAKADTVDKVCEIVKKQLAVAEGETVTAESTFQKLGADSLDTVEIVMALEEAFGIAIEEESAQTITTVQQAADLIEDIIDKKSS 423
            S SG R G        N     QP  +R  + C+AK DTV+KVCEIVKKQLAV EG  V   + F  LGADSLDTVEIVM LEE F I++EE SAQ I TV+ AA LI+ ++  KSS
Sbjct:   24 SFSGARRG--------NAFLRLQPVPMRFAVCCSAKQDTVEKVCEIVKKQLAVPEGTEVCGTTKFSDLGADSLDTVEIVMGLEEEFQISVEETSAQAIATVEDAATLIDKLVSAKSS 132          
BLAST of Phvul.006G096600.2 vs. DB:Swiss
Match: ACP1_BRANA (Acyl carrier protein, chloroplastic OS=Brassica napus OX=3708 GN=ACL1.A1 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 7.055e-34
Identity = 71/141 (50.35%), Postives = 94/141 (66.67%), Query Frame = 1
Query:    1 MATNALSGTSLSMRSLTSQTQAFTSLSGQRSGLISSFGRKNVSFNFQPRQI--RLQISCAAKADTVDKVCEIVKKQLAVAEGETVTAESTFQKLGADSLDTVEIVMALEEAFGIAIEEESAQTITTVQQAADLIEDIIDKK 417
            M+T   S  S+   SL     A T +S Q+  L+S   R N+SFN   R I  RL +SCAAK +TV+KV +IVKKQL++ + + V AE+ F  LGADSLDTVEIVM LEE F I + EE AQ ITTV++AA+LI++++  K
Sbjct:    1 MSTTFCSSVSMQATSLA----ATTRISFQKPALVS---RTNLSFNLS-RSIPTRLSVSCAAKPETVEKVSKIVKKQLSLKDDQNVVAETKFADLGADSLDTVEIVMGLEEEFHIEMAEEKAQKITTVEEAAELIDELVQAK 133          
BLAST of Phvul.006G096600.2 vs. DB:Swiss
Match: ACP1_HORVU (Acyl carrier protein 1, chloroplastic OS=Hordeum vulgare OX=4513 GN=ACL1.1 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.837e-33
Identity = 62/106 (58.49%), Postives = 77/106 (72.64%), Query Frame = 1
Query:  124 VSFNFQPRQIRLQISCAA------KADTVDKVCEIVKKQLAVAEGETVTAESTFQKLGADSLDTVEIVMALEEAFGIAIEEESAQTITTVQQAADLIEDIIDKKSS 423
            VS + +P  +R +I CAA      K +TVDKVC IVKKQLAV +G  VTAES F +LGADSLDTVEIVM LEE F I ++E SAQ I TVQ AA+LIE ++ +K++
Sbjct:   44 VSISSRPSSLRFKICCAAMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELGADSLDTVEIVMGLEEEFNITVDETSAQDIATVQDAANLIEKLVTEKTA 149          
The following BLAST results are available for this feature:
BLAST of Phvul.006G096600.2 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
ACP4_ARATH1.123e-3855.88Acyl carrier protein 4, chloroplastic OS=Arabidops... [more]
ACP1_CASGL5.482e-3853.96Acyl carrier protein 1, chloroplastic OS=Casuarina... [more]
ACP5_BRANA8.257e-3852.52Acyl carrier protein, chloroplastic OS=Brassica na... [more]
ACP1_ARATH1.098e-3653.91Acyl carrier protein 1, chloroplastic OS=Arabidops... [more]
ACP2_HORVU3.658e-3658.65Acyl carrier protein 2, chloroplastic OS=Hordeum v... [more]
ACP3_ARATH2.750e-3556.60Acyl carrier protein 3, chloroplastic OS=Arabidops... [more]
ACP2_ARATH2.089e-3452.03Acyl carrier protein 2, chloroplastic OS=Arabidops... [more]
ACP3_HORVU3.206e-3454.70Acyl carrier protein 3, chloroplastic OS=Hordeum v... [more]
ACP1_BRANA7.055e-3450.35Acyl carrier protein, chloroplastic OS=Brassica na... [more]
ACP1_HORVU1.837e-3358.49Acyl carrier protein 1, chloroplastic OS=Hordeum v... [more]
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020806Polyketide synthase, phosphopantetheine-binding domainSMARTSM00823PKS_PPcoord: 64..118
e-value: 0.0018
score: 23.7
IPR009081Phosphopantetheine binding ACP domainPFAMPF00550PP-bindingcoord: 65..132
e-value: 2.4E-13
score: 50.2
IPR009081Phosphopantetheine binding ACP domainPROSITEPS50075CARRIERcoord: 61..136
score: 21.595
IPR036736ACP-like superfamilyGENE3D1.10.1200.10coord: 59..140
e-value: 8.1E-24
score: 85.7
IPR036736ACP-like superfamilySUPERFAMILY47336ACP-likecoord: 61..137
IPR003231Acyl carrier protein (ACP)TIGRFAMTIGR00517TIGR00517coord: 61..134
e-value: 4.0E-24
score: 82.3
IPR003231Acyl carrier protein (ACP)HAMAPMF_01217Acyl_carriercoord: 62..136
score: 17.099
IPR006162Phosphopantetheine attachment sitePROSITEPS00012PHOSPHOPANTETHEINEcoord: 91..106

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.006G096600.2_Pv_G19833_v2.1

>Phvul.006G096600.2_Pv_G19833_v2.1 ID=Phvul.006G096600.2_Pv_G19833_v2.1; Name=Phvul.006G096600.2_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=142bp
MATNALSGTSLSMRSLTSQTQAFTSLSGQRSGLISSFGRKNVSFNFQPRQ
IRLQISCAAKADTVDKVCEIVKKQLAVAEGETVTAESTFQKLGADSLDTV
EIVMALEEAFGIAIEEESAQTITTVQQAADLIEDIIDKKSS*
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mRNA from alignment at Chr06:20735833..20738208+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.006G096600.2_Pv_G19833_v2.1 ID=Phvul.006G096600.2_Pv_G19833_v2.1; Name=Phvul.006G096600.2; organism=Phaseolus vulgaris; type=mRNA; length=2376bp; location=Sequence derived from: Chr06:20735833..20738208+ (Phaseolus vulgaris
GTTCTCCGCCACCTTCTACCTCTTCTCTCCATTTTTTCTTCTGCGCCTTT GCACCTTCACAACACATCACAATGGCCACCAATGCACTCTCGGGGACATC ACTCTCCATGCGATCTCTCACTTCTCAAACGCAGGTATCGTTTTCCTTCT CCTCTTCCTTATCAATTCTACCTGCTCTGCTCCGCGCTTCGTTCCCTTCC TGATCTGCTCCTTCCTTGCGGCAAAGTCCTCGATGCGTTTGTTTACATGT TTATTTTTTTTTTCTTTATAGGACGCGATTTGTGACCGACACTTCTGAAT CTTAATTTTTTGTTTGTTGCTGTTTTTTTCACCGACTGATCACTGATTGC TAGTTCCACTATTTTTTTTTTCACTTCAATTTTTGTCTATTTTAACTGTG AAAGGCTTTTAGAAAAAATCAGAAGATTTTGGGGTTTCTCAAGTTACATG CCCAACAAGTGCATACTATTTTTTGTTATTTTTTTTTTCTGGTTGAATTA GTGAGAAGAGTTGGACAAAAAATGATAATTTTGGACAAAATCGTGTGTTA GATTCTGCACATATGAATAATGGTAATTAAATTTGTTCACATGAAAAAAA AACTCCGAAAAAACACTTTAATGTCTTACAATTGGATTTTGTTGTTTTAT TTTTTATTCATTAATTAATTCTTTAATGATCTTTGTATGGGTGATTTTGT TGAACAGGCCTTCACCTCACTTTCAGGCCAGAGATCTGGTTTGATTTCCA GCTTTGGGAGAAAGAATGTTTCTTTTAACTTCCAGCCGCGACAAATTCGC CTTCAAATTTCCTGTGCTGTAAGTAGCTACTGCTGTTTATGATTTGTTTA TGATTTTTCATATTTTTGCGTTGGACTATTGTTTGCGTGGATATCAAAAC ACTGTATTTTAGACTTCTTAAGTCTATTGCTGATATGTTTTCTCTAGATC GGATTGTTCTTCATGAACTCTCTCTGTGAAGTAGGGTGCCTGAGAAATGA TTGAGAAAAAATGTTATGTGAATGGTGAAATAGTATGCGTAAGTAAAACA TGAGATTGCTCATCCTTATTTTAATTAATTACCGCTTGGCCTCAACTAAC CATCCGTGTTCTGCTTGGCCTCAACTAACCATTCGTGTACCATTCGTGTT CTGCACCATATATTAGCATACATAAATTTTATGATTTGTAAGAGATGGTT TTAAATGAAGAAACACTAATCAACTACTACTTGGAGCTTTTACGGGGATA TTACTGCAAATACCACAATTAACCATTTTATTATAATTTGAAAACGTAAA TTACATAATGATCTGGTTTTTGGAATCTTGTGCTTTTATTAAGTTTGTGA AGGGCTTTACATGTAGGGAACTGTATGCTTGTTTGTTATGTGCACACCTT TAATTAATCCATATTCAACACCATTTGACAAATGTGATGCAATCAATGAA ATAATATATTTTCTATCCCTCCTTCAATGTAAATAGATCCATTAAATCTT CTCTTGTTTGAGCTTTACCAGCGAGTGAAAACGAGCATATGATGAATGTA ACAGACTTTAGCTTCTATCAAAAGGGCTAGAAAGCAAATTTTGCCGTGTT TGATTAGAATTTTTACCAAAACAGGCCATAAATGACTAGGACTTGCCTTC TCTCTTTGTCCGTGCGTGTATATGTATTTGTATATTTGTATTTATAATGT TTTCATACTTATGTAAACACCTTTGAGCAGGCTAAAGCAGATACAGTAGA TAAGGTGTGCGAAATAGTAAAGAAGCAGTTGGCCGTGGCTGAAGGTGAAA CTGTGACCGCAGAATCAACATTTCAAAAACTTGGAGCTGATTCCCTTGAC ACGGTAACGAGAAACGCCACGGCAACACTAAACATTTCAGTATAGTATCT ACGATCTTATCTTACATATGCAGTGAATGATTGTGGATTTCGTTTAAATA TTTGTAGGTTGAGATCGTGATGGCACTCGAGGAAGCATTTGGTATCGCCA TTGAGGAAGAGAGCGCACAGACCATCACTACAGTTCAGCAAGCTGCTGAT CTTATCGAAGATATCATTGACAAGAAGAGTTCTTAGAATAAACATGTACC AGAAGGTTTGAGTAAACATGAACTCATAGTCTCCGTACCGGTCAACGTTT ATGGTGTGGGGCAATTTTGAGTCTAGAGTGTTTTAGTTGTGAACTGTTGT TGCGTGATAAAAAAAGTCTGAGAACAAAAACAAGTTAGTCCAACCTTTTG CTTCTGGATATTAGTTATATTGAGTCGTCTTTTTGCATTAAGTGGTTTCT GTCTGTGATATGTTAATTTTATCAGAGATAGATTATTTATGTTACTGACA TTTTATGTTAATTTTATTTAGTTCTC
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Coding sequence (CDS) from alignment at Chr06:20735833..20738208+

>Phvul.006G096600.2_Pv_G19833_v2.1 ID=Phvul.006G096600.2_Pv_G19833_v2.1; Name=Phvul.006G096600.2; organism=Phaseolus vulgaris; type=CDS; length=426bp; location=Sequence derived from: Chr06:20735833..20738208+ (Phaseolus vulgaris
ATGGCCACCAATGCACTCTCGGGGACATCACTCTCCATGCGATCTCTCAC
TTCTCAAACGCAGGCCTTCACCTCACTTTCAGGCCAGAGATCTGGTTTGA
TTTCCAGCTTTGGGAGAAAGAATGTTTCTTTTAACTTCCAGCCGCGACAA
ATTCGCCTTCAAATTTCCTGTGCTGCTAAAGCAGATACAGTAGATAAGGT
GTGCGAAATAGTAAAGAAGCAGTTGGCCGTGGCTGAAGGTGAAACTGTGA
CCGCAGAATCAACATTTCAAAAACTTGGAGCTGATTCCCTTGACACGGTT
GAGATCGTGATGGCACTCGAGGAAGCATTTGGTATCGCCATTGAGGAAGA
GAGCGCACAGACCATCACTACAGTTCAGCAAGCTGCTGATCTTATCGAAG
ATATCATTGACAAGAAGAGTTCTTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR020806PKS_PP-bd
IPR009081PP-bd_ACP
IPR036736ACP-like_sf
IPR003231ACP
IPR006162Ppantetheine_attach_site
Vocabulary: Molecular Function
TermDefinition
GO:0031177phosphopantetheine binding
Vocabulary: Biological Process
TermDefinition
GO:0006633fatty acid biosynthetic process