Phvul.006G096600.2
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.006G096600.2 vs. DB:Swiss
Match: ACP4_ARATH (Acyl carrier protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ACP4 PE=2 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.123e-38 Identity = 76/136 (55.88%), Postives = 96/136 (70.59%), Query Frame = 1 Query: 13 ALSGTSLSMRSL-TSQTQAFTSLSGQRSGLISSFGRKNVSFNFQPRQIRLQISCAAKADTVDKVCEIVKKQLAVAEGETVTAESTFQKLGADSLDTVEIVMALEEAFGIAIEEESAQTITTVQQAADLIEDIIDKK 417 +LS TSLS ++ T+ +Q S +S +FGR F + +RLQISCAAKA+TV KV +IVK+QLA+A +TAES F LGADSLDTVEIVMALEE F I++EE AQ ITT+Q+AADLIED++ KK Sbjct: 3 SLSTTSLSFKAPSTTISQVLRKASSSQSV---TFGR----FTSSTKSLRLQISCAAKAETVQKVSDIVKEQLALAADVPLTAESKFSALGADSLDTVEIVMALEEKFNISVEESDAQNITTIQEAADLIEDLVQKK 131
BLAST of Phvul.006G096600.2 vs. DB:Swiss
Match: ACP1_CASGL (Acyl carrier protein 1, chloroplastic OS=Casuarina glauca OX=3522 GN=ACP1 PE=2 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 5.482e-38 Identity = 75/139 (53.96%), Postives = 95/139 (68.35%), Query Frame = 1 Query: 13 ALSGTSLSMRSLTSQTQAFTSLSGQRSGLISSFGRKNVSFNFQP---RQIRLQISCAAKADTVDKVCEIVKKQLAVAEGETVTAESTFQKLGADSLDTVEIVMALEEAFGIAIEEESAQTITTVQQAADLIEDIIDKKS 420 +++GTS+SM S + + A + +S RS + G+ +F P R R + CAAK +TV+KVC IVKKQLA+ + VT ES F LGADSLDTVEIVM LEE FGI +EEESAQ+I TVQ AADLIE +I+KKS Sbjct: 3 SVTGTSISMASFKA-SLAPSRVSNLRSVSLPIKGK-----SFAPLRMRSARFVVCCAAKPETVEKVCAIVKKQLALPDDSAVTGESKFATLGADSLDTVEIVMGLEEEFGINVEEESAQSIATVQDAADLIEKLIEKKS 135
BLAST of Phvul.006G096600.2 vs. DB:Swiss
Match: ACP5_BRANA (Acyl carrier protein, chloroplastic OS=Brassica napus OX=3708 GN=ACL1.C1 PE=2 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 8.257e-38 Identity = 73/139 (52.52%), Postives = 96/139 (69.06%), Query Frame = 1 Query: 1 MATNALSGTSLSMRSLTSQTQAFTSLSGQRSGLISSFGRKNVSFNFQPRQIRLQISCAAKADTVDKVCEIVKKQLAVAEGETVTAESTFQKLGADSLDTVEIVMALEEAFGIAIEEESAQTITTVQQAADLIEDIIDKK 417 MAT + S+ SL + T+ +S Q+ L+S+ GR N+SFN + RL ISCAAK +TV+KV EIVKKQL++ + + V AE+ F LGADSLDTVEIVM LEE FGI + EE AQ I TV+QAA+LIE+++ K Sbjct: 1 MATTFSASVSMQATSLATTTR----ISFQKPVLVSNHGRTNLSFNLS--RTRLSISCAAKQETVEKVSEIVKKQLSLKDDQQVVAETKFVDLGADSLDTVEIVMGLEEEFGIQMAEEKAQKIATVEQAAELIEELMQAK 133
BLAST of Phvul.006G096600.2 vs. DB:Swiss
Match: ACP1_ARATH (Acyl carrier protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ACP1 PE=1 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 1.098e-36 Identity = 69/128 (53.91%), Postives = 91/128 (71.09%), Query Frame = 1 Query: 43 SLTSQTQAFTSLSGQRSGLISSFGRKNVSFNFQPRQI---RLQISCAAKADTVDKVCEIVKKQLAVAEGETVTAESTFQKLGADSLDTVEIVMALEEAFGIAIEEESAQTITTVQQAADLIEDIIDKK 417 SL + A T +S Q+ LIS+ G+ N+SFN + R I RL +SCAAK +T++KV IVKKQL++ + V AE+ F LGADSLDTVEIVM LEE F I + EE AQ I TV+QAA+LIE++I++K Sbjct: 10 SLQTSCLATTRISFQKPALISNHGKTNLSFNLR-RSIPSRRLSVSCAAKQETIEKVSAIVKKQLSLTPDKKVVAETKFADLGADSLDTVEIVMGLEEEFNIQMAEEKAQKIATVEQAAELIEELINEK 136
BLAST of Phvul.006G096600.2 vs. DB:Swiss
Match: ACP2_HORVU (Acyl carrier protein 2, chloroplastic OS=Hordeum vulgare OX=4513 GN=ACL1.2 PE=1 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 3.658e-36 Identity = 61/104 (58.65%), Postives = 78/104 (75.00%), Query Frame = 1 Query: 103 SSFGRKNVSFNFQPRQIRLQISCAAKADTVDKVCEIVKKQLAVAEGETVTAESTFQKLGADSLDTVEIVMALEEAFGIAIEEESAQTITTVQQAADLIEDIIDK 414 S+ + NVSF QP R + CAAK +TV+KVC+IVK QLA+++ V+ STF LGADSLDTVEIVM LEEAFGI++EE SAQTI TV+ AA+LI+ ++ K Sbjct: 26 SALRKDNVSFRLQPVPQRFSVCCAAKKETVEKVCDIVKSQLALSDDTEVSGSSTFADLGADSLDTVEIVMGLEEAFGISVEESSAQTIATVEDAANLIDSLVGK 129
BLAST of Phvul.006G096600.2 vs. DB:Swiss
Match: ACP3_ARATH (Acyl carrier protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ACP3 PE=1 SV=2) HSP 1 Score: 122.094 bits (305), Expect = 2.750e-35 Identity = 60/106 (56.60%), Postives = 80/106 (75.47%), Query Frame = 1 Query: 106 SFG-RKNVSFNFQPRQIRLQISCAAKADTVDKVCEIVKKQLAVAEGETVTAESTFQKLGADSLDTVEIVMALEEAFGIAIEEESAQTITTVQQAADLIEDIIDKKS 420 S+G R N+SFN + RL + CAAK +TVDKVC +V+KQL++ E + +TA + F LGADSLDTVEIVM LEE FGI + EE AQ+I TV+QAA LIE+++ +K+ Sbjct: 30 SYGSRSNLSFNLRQLPTRLTVYCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGLEEEFGIEMAEEKAQSIATVEQAAALIEELLLEKA 135
BLAST of Phvul.006G096600.2 vs. DB:Swiss
Match: ACP2_ARATH (Acyl carrier protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ACP2 PE=1 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 2.089e-34 Identity = 64/123 (52.03%), Postives = 87/123 (70.73%), Query Frame = 1 Query: 52 SQTQAFTSLSGQRSGLISSFGRKNVSFNFQPRQIRLQISCAAKADTVDKVCEIVKKQLAVAEGETVTAESTFQKLGADSLDTVEIVMALEEAFGIAIEEESAQTITTVQQAADLIEDIIDKKS 420 SQ ++F++ G+RS L SFN + RL +SCAAK +TVDKVC +V+KQL++ E + +TA + F LGADSLDTVEIVM LEE FGI + EE AQ+I TV+QAA LIE+++ +K+ Sbjct: 24 SQVKSFSN--GRRSSL---------SFNLRQLPTRLTVSCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGLEEEFGIEMAEEKAQSIATVEQAAALIEELLFEKA 135
BLAST of Phvul.006G096600.2 vs. DB:Swiss
Match: ACP3_HORVU (Acyl carrier protein 3, chloroplastic OS=Hordeum vulgare OX=4513 GN=ACL1.3 PE=1 SV=2) HSP 1 Score: 119.398 bits (298), Expect = 3.206e-34 Identity = 64/117 (54.70%), Postives = 75/117 (64.10%), Query Frame = 1 Query: 73 SLSGQRSGLISSFGRKNVSFNFQPRQIRLQISCAAKADTVDKVCEIVKKQLAVAEGETVTAESTFQKLGADSLDTVEIVMALEEAFGIAIEEESAQTITTVQQAADLIEDIIDKKSS 423 S SG R G N QP +R + C+AK DTV+KVCEIVKKQLAV EG V + F LGADSLDTVEIVM LEE F I++EE SAQ I TV+ AA LI+ ++ KSS Sbjct: 24 SFSGARRG--------NAFLRLQPVPMRFAVCCSAKQDTVEKVCEIVKKQLAVPEGTEVCGTTKFSDLGADSLDTVEIVMGLEEEFQISVEETSAQAIATVEDAATLIDKLVSAKSS 132
BLAST of Phvul.006G096600.2 vs. DB:Swiss
Match: ACP1_BRANA (Acyl carrier protein, chloroplastic OS=Brassica napus OX=3708 GN=ACL1.A1 PE=2 SV=2) HSP 1 Score: 118.242 bits (295), Expect = 7.055e-34 Identity = 71/141 (50.35%), Postives = 94/141 (66.67%), Query Frame = 1 Query: 1 MATNALSGTSLSMRSLTSQTQAFTSLSGQRSGLISSFGRKNVSFNFQPRQI--RLQISCAAKADTVDKVCEIVKKQLAVAEGETVTAESTFQKLGADSLDTVEIVMALEEAFGIAIEEESAQTITTVQQAADLIEDIIDKK 417 M+T S S+ SL A T +S Q+ L+S R N+SFN R I RL +SCAAK +TV+KV +IVKKQL++ + + V AE+ F LGADSLDTVEIVM LEE F I + EE AQ ITTV++AA+LI++++ K Sbjct: 1 MSTTFCSSVSMQATSLA----ATTRISFQKPALVS---RTNLSFNLS-RSIPTRLSVSCAAKPETVEKVSKIVKKQLSLKDDQNVVAETKFADLGADSLDTVEIVMGLEEEFHIEMAEEKAQKITTVEEAAELIDELVQAK 133
BLAST of Phvul.006G096600.2 vs. DB:Swiss
Match: ACP1_HORVU (Acyl carrier protein 1, chloroplastic OS=Hordeum vulgare OX=4513 GN=ACL1.1 PE=1 SV=2) HSP 1 Score: 117.857 bits (294), Expect = 1.837e-33 Identity = 62/106 (58.49%), Postives = 77/106 (72.64%), Query Frame = 1 Query: 124 VSFNFQPRQIRLQISCAA------KADTVDKVCEIVKKQLAVAEGETVTAESTFQKLGADSLDTVEIVMALEEAFGIAIEEESAQTITTVQQAADLIEDIIDKKSS 423 VS + +P +R +I CAA K +TVDKVC IVKKQLAV +G VTAES F +LGADSLDTVEIVM LEE F I ++E SAQ I TVQ AA+LIE ++ +K++ Sbjct: 44 VSISSRPSSLRFKICCAAMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELGADSLDTVEIVMGLEEEFNITVDETSAQDIATVQDAANLIEKLVTEKTA 149 The following BLAST results are available for this feature:
BLAST of Phvul.006G096600.2 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.006G096600.2_Pv_G19833_v2.1 >Phvul.006G096600.2_Pv_G19833_v2.1 ID=Phvul.006G096600.2_Pv_G19833_v2.1; Name=Phvul.006G096600.2_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=142bpback to top mRNA from alignment at Chr06:20735833..20738208+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.006G096600.2_Pv_G19833_v2.1 ID=Phvul.006G096600.2_Pv_G19833_v2.1; Name=Phvul.006G096600.2; organism=Phaseolus vulgaris; type=mRNA; length=2376bp; location=Sequence derived from: Chr06:20735833..20738208+ (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr06:20735833..20738208+ >Phvul.006G096600.2_Pv_G19833_v2.1 ID=Phvul.006G096600.2_Pv_G19833_v2.1; Name=Phvul.006G096600.2; organism=Phaseolus vulgaris; type=CDS; length=426bp; location=Sequence derived from: Chr06:20735833..20738208+ (Phaseolus vulgarisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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