Transcript Overview
Name | Phvul.007G224600.2 |
Unique Name | Phvul.007G224600.2_Pv_G19833_v2.1 |
Type | mRNA |
Organism | Phaseolus vulgaris (Common bean) |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.007G224600.2_Pv_G19833_v2.1 | Phvul.007G224600.2_Pv_G19833_v2.1 | Phaseolus vulgaris | polypeptide |
Phvul.007G224600.2 | Phvul.007G224600.2_Pv_G19833_v2.1-protein | Phaseolus vulgaris | polypeptide |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.007G224600.2.v2.1.CDS.3 | Phvul.007G224600.2.v2.1.CDS.3_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
Phvul.007G224600.2.v2.1.CDS.2 | Phvul.007G224600.2.v2.1.CDS.2_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
Phvul.007G224600.2.v2.1.CDS.1 | Phvul.007G224600.2.v2.1.CDS.1_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.007G224600.2.v2.1.three_prime_UTR.1 | Phvul.007G224600.2.v2.1.three_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | three_prime_UTR |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.007G224600.2.v2.1.five_prime_UTR.1 | Phvul.007G224600.2.v2.1.five_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | five_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 392..419 |
None | No IPR available | GENE3D | 1.10.10.60 | | coord: 126..177 e-value: 1.5E-6 score: 30.0 |
None | No IPR available | PFAM | PF13837 | Myb_DNA-bind_4 | coord: 102..191 e-value: 1.5E-20 score: 73.4 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 265..330 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 204..245 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 24..96 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 269..292 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 302..325 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 24..38 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 80..96 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 64..79 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 213..245 |
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.007G224600.2_Pv_G19833_v2.1 >Phvul.007G224600.2_Pv_G19833_v2.1 ID=Phvul.007G224600.2_Pv_G19833_v2.1; Name=Phvul.007G224600.2_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=443bp MLFPLFNYSIKGAGMFSGMVGVDNSLQPQQQQNPHHLQHHPQMVPYAPHH DTDPHHPHHNQSIKQGYPPYSSAKTKQQQHSGLSDEDDDTSDPKKKVSLW QRMKWTDTMVRLLIMAVYYIGDEGGSEGTDKKKSLGMLQKKGKWKSVSRA MMEKGSYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQNLLETME LSPKMKEEQGETGGDVPQSQAQLHQQQPQQQQPQQQQQQQPCFHSSEVEN LGASGVEGLRMLKVGNGEENDDDSDEEEDSEDDSDEEEDDSGEGGSRGNV GHGHENMEDDNDGRSMRKRARKVREVPVSPLMMQQLSAEVSGVFQDGGRS AWDKKQWMRSRILQLEEQQISYQSQSFELEKQRLKWARFSSKKEREMKRA KLENERRRLENERMVLLIRQKEFELMSLQHQQKHQQQQHSST* back to topmRNA from alignment at Chr07:34820651..34822822- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Phvul.007G224600.2_Pv_G19833_v2.1 ID=Phvul.007G224600.2_Pv_G19833_v2.1; Name=Phvul.007G224600.2; organism=Phaseolus vulgaris; type=mRNA; length=2172bp; location=Sequence derived from: Chr07:34820651..34822822- (Phaseolus vulgaris GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAC
ATAGGAAGGTTTCATGGTTTTAGTTTATGGTATCTTTGTTGGCGCTTTGA
AACGGCGCACACATAGTCGGCGTGGCATGGCGTGAGTCCCCAATTTGAGC
ACAAAACCTGTGGGTTGGTTAAACCCTCACTCTAACCCAACTATAAAACC
ATGGGCAGTTTTATTTTCTCACTACTGCTTCGTCAACAAAACCAGTTGCT
TCAAAAACCAACCTTTTGTTACACTTTCTGTTATATTATCTTTACTCTTC
TCTTTCCCCGACAACACAATCTATCATCAACTCCTATGTAATCCCATACT
AAACTGCCATTTTGCTTTCCTCTCACTCTCCCCCACCAACCCATCTTCAT
CTTCTTCCATGCTCTTTCCTCTCTTCAACTATTCGATTAAGGGTAAGCGT
TTTTCTTCTAAAGTTTGTAGCTTTAGCTTGTTTGGTTGAGTTTTGAAAAG
TTGGTGTTTCTTGTTTATGGAACCCAATGGACTAGGCGCTGGAATGTTCT
CTGGGATGGTAGGAGTGGATAACTCTCTGCAACCGCAGCAACAACAAAAC
CCTCACCACTTGCAACACCACCCCCAAATGGTTCCCTATGCTCCACACCA
TGACACTGATCCACATCATCCACACCATAATCAATCCATCAAACAAGGGT
ACCCTCCCTATTCTTCGGCCAAGACCAAACAACAGCAGCATAGTGGCCTC
AGTGATGAGGATGATGACACCTCGGACCCCAAGAAGAAGGTCTCGCTGTG
GCAGAGAATGAAGTGGACTGACACCATGGTGAGGCTTTTGATAATGGCGG
TTTATTACATTGGTGATGAGGGTGGCTCGGAAGGGACTGATAAGAAGAAG
TCCTTGGGTATGTTGCAGAAGAAAGGGAAGTGGAAGTCGGTGTCCAGGGC
TATGATGGAGAAAGGGTCCTATGTTTCTCCTCAACAGTGTGAGGACAAGT
TCAATGACTTGAACAAGAGGTATAAGAGGGTGAATGATATTCTTGGCAAG
GGAACTGCTTGCAGGGTTGTGGAGAATCAGAATTTGTTGGAAACGATGGA
GTTGTCACCAAAGATGAAAGAGGAGGTAAAGAAGTTGCTCAATTCCAAAC
ATTTGTTCTTCAGGGAAATGTGTGCTTACCATAATAGTTGTGGTCATGTG
AATAACAATCCTCCACAGCAAGGAGAGACTGGGGGTGACGTGCCTCAGTC
TCAGGCTCAACTACATCAGCAGCAGCCTCAGCAACAACAGCCTCAGCAAC
AACAGCAACAGCAACCTTGTTTTCATTCATCAGAGGTGGAGAATTTGGGG
GCTTCAGGGGTGGAGGGTTTGAGGATGTTGAAAGTGGGAAATGGGGAAGA
GAATGATGATGATTCTGATGAGGAGGAAGACTCTGAGGATGATTCGGATG
AGGAGGAAGATGATTCAGGAGAAGGTGGTTCAAGGGGTAATGTGGGGCAT
GGACATGAAAATATGGAGGATGATAATGATGGAAGGTCAATGAGGAAGAG
GGCAAGGAAAGTGAGGGAAGTTCCTGTGTCACCACTGATGATGCAGCAAC
TGAGTGCTGAGGTGAGTGGTGTGTTCCAAGATGGGGGTAGGAGTGCTTGG
GACAAGAAGCAATGGATGAGGAGCAGGATACTGCAGTTGGAGGAGCAGCA
AATAAGCTATCAGAGTCAATCATTTGAGTTGGAGAAGCAAAGGTTGAAAT
GGGCAAGGTTTAGCAGCAAGAAGGAGAGGGAAATGAAGAGAGCCAAACTT
GAAAATGAACGAAGGAGGCTTGAGAATGAGAGAATGGTTTTGCTCATTCG
CCAGAAGGAGTTTGAACTGATGAGTCTTCAACACCAACAAAAGCATCAAC
AACAGCAACATTCTTCCACTTAGATCAAGGGGTGATGATTTTGCTGGGGT
TAGTTGGATGATAGATGAAACTATGGCATAGAAAAATTGTAGATGAATTA
GGCCAAATAGCTGTTCTCGTTTTGGGGTACTTATTAAGTTGGTATTTTTG
TTATAAACCATGTTTAATATAATCTATCACTTCCTTCTTCAAGTTGGATA
AAAGTAAAGCCATTTGACCCGG back to topCoding sequence (CDS) from alignment at Chr07:34820651..34822822- >Phvul.007G224600.2_Pv_G19833_v2.1 ID=Phvul.007G224600.2_Pv_G19833_v2.1; Name=Phvul.007G224600.2; organism=Phaseolus vulgaris; type=CDS; length=1329bp; location=Sequence derived from: Chr07:34820651..34822822- (Phaseolus vulgaris ATGCTCTTTCCTCTCTTCAACTATTCGATTAAGGGCGCTGGAATGTTCTC TGGGATGGTAGGAGTGGATAACTCTCTGCAACCGCAGCAACAACAAAACC CTCACCACTTGCAACACCACCCCCAAATGGTTCCCTATGCTCCACACCAT GACACTGATCCACATCATCCACACCATAATCAATCCATCAAACAAGGGTA CCCTCCCTATTCTTCGGCCAAGACCAAACAACAGCAGCATAGTGGCCTCA GTGATGAGGATGATGACACCTCGGACCCCAAGAAGAAGGTCTCGCTGTGG CAGAGAATGAAGTGGACTGACACCATGGTGAGGCTTTTGATAATGGCGGT TTATTACATTGGTGATGAGGGTGGCTCGGAAGGGACTGATAAGAAGAAGT CCTTGGGTATGTTGCAGAAGAAAGGGAAGTGGAAGTCGGTGTCCAGGGCT ATGATGGAGAAAGGGTCCTATGTTTCTCCTCAACAGTGTGAGGACAAGTT CAATGACTTGAACAAGAGGTATAAGAGGGTGAATGATATTCTTGGCAAGG GAACTGCTTGCAGGGTTGTGGAGAATCAGAATTTGTTGGAAACGATGGAG TTGTCACCAAAGATGAAAGAGGAGCAAGGAGAGACTGGGGGTGACGTGCC TCAGTCTCAGGCTCAACTACATCAGCAGCAGCCTCAGCAACAACAGCCTC AGCAACAACAGCAACAGCAACCTTGTTTTCATTCATCAGAGGTGGAGAAT TTGGGGGCTTCAGGGGTGGAGGGTTTGAGGATGTTGAAAGTGGGAAATGG GGAAGAGAATGATGATGATTCTGATGAGGAGGAAGACTCTGAGGATGATT CGGATGAGGAGGAAGATGATTCAGGAGAAGGTGGTTCAAGGGGTAATGTG GGGCATGGACATGAAAATATGGAGGATGATAATGATGGAAGGTCAATGAG GAAGAGGGCAAGGAAAGTGAGGGAAGTTCCTGTGTCACCACTGATGATGC AGCAACTGAGTGCTGAGGTGAGTGGTGTGTTCCAAGATGGGGGTAGGAGT GCTTGGGACAAGAAGCAATGGATGAGGAGCAGGATACTGCAGTTGGAGGA GCAGCAAATAAGCTATCAGAGTCAATCATTTGAGTTGGAGAAGCAAAGGT TGAAATGGGCAAGGTTTAGCAGCAAGAAGGAGAGGGAAATGAAGAGAGCC AAACTTGAAAATGAACGAAGGAGGCTTGAGAATGAGAGAATGGTTTTGCT CATTCGCCAGAAGGAGTTTGAACTGATGAGTCTTCAACACCAACAAAAGC ATCAACAACAGCAACATTCTTCCACTTAG back to top
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