Phvul.007G224600.2

Transcript Overview
NamePhvul.007G224600.2
Unique NamePhvul.007G224600.2_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr07supercontigChr07:34820651..34822822 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvL033Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvpvL119Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL237Pisum sativum Cameor genome v1aPisum sativum
pspvL241Pisum sativum Cameor genome v1aPisum sativum
pspvL647Pisum sativum Cameor genome v1aPisum sativum
pspvL673Pisum sativum Cameor genome v1aPisum sativum
pvvuR580Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR627Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0313Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipvL0481Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL287Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crpvL406Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL248Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capvL389Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0465Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0768Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0921Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0808Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1047Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1395Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL169Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspvL463Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR547Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR603Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR638Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR676Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR627Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR664Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR552Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR571Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR510Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR551Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR694Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR726Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL078Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL234Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL358Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL103Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL428Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL517Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL080Cicer arietinum
carpvL241Cicer arietinum
carpvL371Cicer arietinum
carpvL615Cicer arietinum
ccapvL147Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL322Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL400Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL497Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR643Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR716Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR665Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR723Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR672Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR691Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR676Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR692Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR535Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR570Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR535Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR578Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.007G224600Phvul.007G224600_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.007G224600.2_Pv_G19833_v2.1Phvul.007G224600.2_Pv_G19833_v2.1Phaseolus vulgarispolypeptide
Phvul.007G224600.2Phvul.007G224600.2_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.007G224600.2.v2.1.CDS.3Phvul.007G224600.2.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.007G224600.2.v2.1.CDS.2Phvul.007G224600.2.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.007G224600.2.v2.1.CDS.1Phvul.007G224600.2.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.007G224600.2.v2.1.three_prime_UTR.1Phvul.007G224600.2.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.007G224600.2.v2.1.five_prime_UTR.1Phvul.007G224600.2.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Phvul.007G224600.2 vs.
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 392..419
NoneNo IPR availableGENE3D1.10.10.60coord: 126..177
e-value: 1.5E-6
score: 30.0
NoneNo IPR availablePFAMPF13837Myb_DNA-bind_4coord: 102..191
e-value: 1.5E-20
score: 73.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 265..330
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 204..245
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 269..292
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 302..325
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 213..245

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.007G224600.2_Pv_G19833_v2.1

>Phvul.007G224600.2_Pv_G19833_v2.1 ID=Phvul.007G224600.2_Pv_G19833_v2.1; Name=Phvul.007G224600.2_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=443bp
MLFPLFNYSIKGAGMFSGMVGVDNSLQPQQQQNPHHLQHHPQMVPYAPHH
DTDPHHPHHNQSIKQGYPPYSSAKTKQQQHSGLSDEDDDTSDPKKKVSLW
QRMKWTDTMVRLLIMAVYYIGDEGGSEGTDKKKSLGMLQKKGKWKSVSRA
MMEKGSYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQNLLETME
LSPKMKEEQGETGGDVPQSQAQLHQQQPQQQQPQQQQQQQPCFHSSEVEN
LGASGVEGLRMLKVGNGEENDDDSDEEEDSEDDSDEEEDDSGEGGSRGNV
GHGHENMEDDNDGRSMRKRARKVREVPVSPLMMQQLSAEVSGVFQDGGRS
AWDKKQWMRSRILQLEEQQISYQSQSFELEKQRLKWARFSSKKEREMKRA
KLENERRRLENERMVLLIRQKEFELMSLQHQQKHQQQQHSST*
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mRNA from alignment at Chr07:34820651..34822822-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.007G224600.2_Pv_G19833_v2.1 ID=Phvul.007G224600.2_Pv_G19833_v2.1; Name=Phvul.007G224600.2; organism=Phaseolus vulgaris; type=mRNA; length=2172bp; location=Sequence derived from: Chr07:34820651..34822822- (Phaseolus vulgaris
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAC ATAGGAAGGTTTCATGGTTTTAGTTTATGGTATCTTTGTTGGCGCTTTGA AACGGCGCACACATAGTCGGCGTGGCATGGCGTGAGTCCCCAATTTGAGC ACAAAACCTGTGGGTTGGTTAAACCCTCACTCTAACCCAACTATAAAACC ATGGGCAGTTTTATTTTCTCACTACTGCTTCGTCAACAAAACCAGTTGCT TCAAAAACCAACCTTTTGTTACACTTTCTGTTATATTATCTTTACTCTTC TCTTTCCCCGACAACACAATCTATCATCAACTCCTATGTAATCCCATACT AAACTGCCATTTTGCTTTCCTCTCACTCTCCCCCACCAACCCATCTTCAT CTTCTTCCATGCTCTTTCCTCTCTTCAACTATTCGATTAAGGGTAAGCGT TTTTCTTCTAAAGTTTGTAGCTTTAGCTTGTTTGGTTGAGTTTTGAAAAG TTGGTGTTTCTTGTTTATGGAACCCAATGGACTAGGCGCTGGAATGTTCT CTGGGATGGTAGGAGTGGATAACTCTCTGCAACCGCAGCAACAACAAAAC CCTCACCACTTGCAACACCACCCCCAAATGGTTCCCTATGCTCCACACCA TGACACTGATCCACATCATCCACACCATAATCAATCCATCAAACAAGGGT ACCCTCCCTATTCTTCGGCCAAGACCAAACAACAGCAGCATAGTGGCCTC AGTGATGAGGATGATGACACCTCGGACCCCAAGAAGAAGGTCTCGCTGTG GCAGAGAATGAAGTGGACTGACACCATGGTGAGGCTTTTGATAATGGCGG TTTATTACATTGGTGATGAGGGTGGCTCGGAAGGGACTGATAAGAAGAAG TCCTTGGGTATGTTGCAGAAGAAAGGGAAGTGGAAGTCGGTGTCCAGGGC TATGATGGAGAAAGGGTCCTATGTTTCTCCTCAACAGTGTGAGGACAAGT TCAATGACTTGAACAAGAGGTATAAGAGGGTGAATGATATTCTTGGCAAG GGAACTGCTTGCAGGGTTGTGGAGAATCAGAATTTGTTGGAAACGATGGA GTTGTCACCAAAGATGAAAGAGGAGGTAAAGAAGTTGCTCAATTCCAAAC ATTTGTTCTTCAGGGAAATGTGTGCTTACCATAATAGTTGTGGTCATGTG AATAACAATCCTCCACAGCAAGGAGAGACTGGGGGTGACGTGCCTCAGTC TCAGGCTCAACTACATCAGCAGCAGCCTCAGCAACAACAGCCTCAGCAAC AACAGCAACAGCAACCTTGTTTTCATTCATCAGAGGTGGAGAATTTGGGG GCTTCAGGGGTGGAGGGTTTGAGGATGTTGAAAGTGGGAAATGGGGAAGA GAATGATGATGATTCTGATGAGGAGGAAGACTCTGAGGATGATTCGGATG AGGAGGAAGATGATTCAGGAGAAGGTGGTTCAAGGGGTAATGTGGGGCAT GGACATGAAAATATGGAGGATGATAATGATGGAAGGTCAATGAGGAAGAG GGCAAGGAAAGTGAGGGAAGTTCCTGTGTCACCACTGATGATGCAGCAAC TGAGTGCTGAGGTGAGTGGTGTGTTCCAAGATGGGGGTAGGAGTGCTTGG GACAAGAAGCAATGGATGAGGAGCAGGATACTGCAGTTGGAGGAGCAGCA AATAAGCTATCAGAGTCAATCATTTGAGTTGGAGAAGCAAAGGTTGAAAT GGGCAAGGTTTAGCAGCAAGAAGGAGAGGGAAATGAAGAGAGCCAAACTT GAAAATGAACGAAGGAGGCTTGAGAATGAGAGAATGGTTTTGCTCATTCG CCAGAAGGAGTTTGAACTGATGAGTCTTCAACACCAACAAAAGCATCAAC AACAGCAACATTCTTCCACTTAGATCAAGGGGTGATGATTTTGCTGGGGT TAGTTGGATGATAGATGAAACTATGGCATAGAAAAATTGTAGATGAATTA GGCCAAATAGCTGTTCTCGTTTTGGGGTACTTATTAAGTTGGTATTTTTG TTATAAACCATGTTTAATATAATCTATCACTTCCTTCTTCAAGTTGGATA AAAGTAAAGCCATTTGACCCGG
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Coding sequence (CDS) from alignment at Chr07:34820651..34822822-

>Phvul.007G224600.2_Pv_G19833_v2.1 ID=Phvul.007G224600.2_Pv_G19833_v2.1; Name=Phvul.007G224600.2; organism=Phaseolus vulgaris; type=CDS; length=1329bp; location=Sequence derived from: Chr07:34820651..34822822- (Phaseolus vulgaris
ATGCTCTTTCCTCTCTTCAACTATTCGATTAAGGGCGCTGGAATGTTCTC
TGGGATGGTAGGAGTGGATAACTCTCTGCAACCGCAGCAACAACAAAACC
CTCACCACTTGCAACACCACCCCCAAATGGTTCCCTATGCTCCACACCAT
GACACTGATCCACATCATCCACACCATAATCAATCCATCAAACAAGGGTA
CCCTCCCTATTCTTCGGCCAAGACCAAACAACAGCAGCATAGTGGCCTCA
GTGATGAGGATGATGACACCTCGGACCCCAAGAAGAAGGTCTCGCTGTGG
CAGAGAATGAAGTGGACTGACACCATGGTGAGGCTTTTGATAATGGCGGT
TTATTACATTGGTGATGAGGGTGGCTCGGAAGGGACTGATAAGAAGAAGT
CCTTGGGTATGTTGCAGAAGAAAGGGAAGTGGAAGTCGGTGTCCAGGGCT
ATGATGGAGAAAGGGTCCTATGTTTCTCCTCAACAGTGTGAGGACAAGTT
CAATGACTTGAACAAGAGGTATAAGAGGGTGAATGATATTCTTGGCAAGG
GAACTGCTTGCAGGGTTGTGGAGAATCAGAATTTGTTGGAAACGATGGAG
TTGTCACCAAAGATGAAAGAGGAGCAAGGAGAGACTGGGGGTGACGTGCC
TCAGTCTCAGGCTCAACTACATCAGCAGCAGCCTCAGCAACAACAGCCTC
AGCAACAACAGCAACAGCAACCTTGTTTTCATTCATCAGAGGTGGAGAAT
TTGGGGGCTTCAGGGGTGGAGGGTTTGAGGATGTTGAAAGTGGGAAATGG
GGAAGAGAATGATGATGATTCTGATGAGGAGGAAGACTCTGAGGATGATT
CGGATGAGGAGGAAGATGATTCAGGAGAAGGTGGTTCAAGGGGTAATGTG
GGGCATGGACATGAAAATATGGAGGATGATAATGATGGAAGGTCAATGAG
GAAGAGGGCAAGGAAAGTGAGGGAAGTTCCTGTGTCACCACTGATGATGC
AGCAACTGAGTGCTGAGGTGAGTGGTGTGTTCCAAGATGGGGGTAGGAGT
GCTTGGGACAAGAAGCAATGGATGAGGAGCAGGATACTGCAGTTGGAGGA
GCAGCAAATAAGCTATCAGAGTCAATCATTTGAGTTGGAGAAGCAAAGGT
TGAAATGGGCAAGGTTTAGCAGCAAGAAGGAGAGGGAAATGAAGAGAGCC
AAACTTGAAAATGAACGAAGGAGGCTTGAGAATGAGAGAATGGTTTTGCT
CATTCGCCAGAAGGAGTTTGAACTGATGAGTCTTCAACACCAACAAAAGC
ATCAACAACAGCAACATTCTTCCACTTAG
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