Phvul.007G224900.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.007G224900.1 vs. DB:Swiss
Match: RL24_CICAR (60S ribosomal protein L24 OS=Cicer arietinum OX=3827 GN=RPL24 PE=2 SV=1) HSP 1 Score: 231.491 bits (589), Expect = 9.668e-78 Identity = 135/146 (92.47%), Postives = 140/146 (95.89%), Query Frame = 1 Query: 1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIXXXXXXXXXXXXXXXXXXXXXXXXSQGKGAV 438
MVLKTELCRFSGAKIYPG+GIRF+RGDSQVFLF NSKCKRYFHNRLKPSKLTWTAM+RKQHKKD AQEAVKKRRRATKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKER+KKTKDEKKAKKAEV +K QKSQGKG V
Sbjct: 1 MVLKTELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVASKAQKSQGKGNV 146
BLAST of Phvul.007G224900.1 vs. DB:Swiss
Match: RL24_PRUAV (60S ribosomal protein L24 OS=Prunus avium OX=42229 GN=RPL24 PE=2 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 2.752e-76 Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 1 Query: 1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREI 345
MVLKTELCRFSGAKIYPGKGIRF+R DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREI
Sbjct: 1 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREI 115
BLAST of Phvul.007G224900.1 vs. DB:Swiss
Match: RL242_ARATH (60S ribosomal protein L24-2 OS=Arabidopsis thaliana OX=3702 GN=RPL24B PE=1 SV=2) HSP 1 Score: 223.016 bits (567), Expect = 2.307e-74 Identity = 106/115 (92.17%), Postives = 110/115 (95.65%), Query Frame = 1 Query: 1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREI 345
MVLKTELCRFSG KIYPG+GIRF+R DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQHKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREI
Sbjct: 1 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREI 115
BLAST of Phvul.007G224900.1 vs. DB:Swiss
Match: RL241_ARATH (60S ribosomal protein L24-1 OS=Arabidopsis thaliana OX=3702 GN=RPL24A PE=1 SV=2) HSP 1 Score: 222.631 bits (566), Expect = 3.861e-74 Identity = 106/115 (92.17%), Postives = 110/115 (95.65%), Query Frame = 1 Query: 1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREI 345
MVLKTELCRFSG KIYPG+GIRF+R DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQHKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREI
Sbjct: 1 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREI 115
BLAST of Phvul.007G224900.1 vs. DB:Swiss
Match: RL24_HORVU (60S ribosomal protein L24 OS=Hordeum vulgare OX=4513 GN=RPL24 PE=2 SV=1) HSP 1 Score: 220.32 bits (560), Expect = 2.154e-73 Identity = 128/146 (87.67%), Postives = 132/146 (90.41%), Query Frame = 1 Query: 1 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIXXXXXXXXXXXXXXXXXXXXXXXXSQGKGAV 438
MVLKTELCRFSG KIYPGKGIRF+R DSQVFLFANSKCKRYFHNRLKP+KL WTAMYRKQHKKDI EA KKRRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKER+KKTKDEKKAKKAEV + GKGAV
Sbjct: 1 MVLKTELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQHKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVTKSQKSQGGKGAV 146
BLAST of Phvul.007G224900.1 vs. DB:Swiss
Match: RL24_DEBHA (60S ribosomal protein L24 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=RPL24 PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.570e-33 Identity = 56/107 (52.34%), Postives = 79/107 (73.83%), Query Frame = 1 Query: 7 LKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAARE 327
+K EL FSG KIYPG+G FVRGDS++F F +SK FH R P +++WT +YR+QHKK I++E+ K+R R T K R+IVGA+LE+I+++R++KP R AAR+
Sbjct: 1 MKVELDSFSGTKIYPGRGTLFVRGDSKIFRFQSSKSASLFHQRKNPRRISWTVLYRRQHKKGISEESAKRRTRKTVKN-QRAIVGASLELIKERRSQKPSDRKAARD 106
BLAST of Phvul.007G224900.1 vs. DB:Swiss
Match: RL24_ASHGO (60S ribosomal protein L24 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=RPL24 PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.398e-32 Identity = 56/106 (52.83%), Postives = 75/106 (70.75%), Query Frame = 1 Query: 7 LKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAR 324
+K E+ FSGAKIYPG+G FVRGDS+VF F +SK FH R P ++ WT +YR+ HKK I +E KKR R T K R++VGA+LE+I+++R+ KPE+R A R
Sbjct: 1 MKVEIDSFSGAKIYPGRGTLFVRGDSKVFRFHSSKSASLFHQRKNPRRIAWTVLYRRHHKKGITEEVAKKRSRKTVKA-QRAVVGASLELIKERRSLKPEIRKAKR 105
BLAST of Phvul.007G224900.1 vs. DB:Swiss
Match: RL24_CANGA (60S ribosomal protein L24 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=RPL24 PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 4.092e-32 Identity = 57/106 (53.77%), Postives = 74/106 (69.81%), Query Frame = 1 Query: 7 LKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAR 324
+K E+ FSGAKIYPG+G FVRGDS++F F NSK F R P ++ WT +YR+ HKK I +E KKR R T K R+IVGA+LE+I+++R+ KPEVR A R
Sbjct: 1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRVAWTVLYRRHHKKGITEEVAKKRSRKTVKA-QRAIVGASLELIKERRSLKPEVRKAKR 105
BLAST of Phvul.007G224900.1 vs. DB:Swiss
Match: RL24B_YEAST (60S ribosomal protein L24-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL24B PE=1 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 8.282e-32 Identity = 57/111 (51.35%), Postives = 75/111 (67.57%), Query Frame = 1 Query: 7 LKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALR 339
+K E+ FSGAKIYPG+G FVRGDS++F F NSK F R P ++ WT ++RK HKK I +E KKR R T K R I GA+L++I+++R+ KPEVR A RE L+
Sbjct: 1 MKVEVDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKA-QRPITGASLDLIKERRSLKPEVRKANREEKLK 110
BLAST of Phvul.007G224900.1 vs. DB:Swiss
Match: RL24_KLULA (60S ribosomal protein L24 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=RPL24 PE=1 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 8.649e-32 Identity = 54/106 (50.94%), Postives = 75/106 (70.75%), Query Frame = 1 Query: 7 LKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAR 324
+K E+ FSGAKIYPG+G FVRGDS++F F +SK FH R P ++ WT +YR+ HKK I +E +KR R + K R++VGA+LE+I+++R+ KPEVR A R
Sbjct: 1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQSSKSASLFHQRKNPRRIAWTVLYRRHHKKGITEEVARKRTRKSVKA-QRAVVGASLELIKERRSLKPEVRKAQR 105 The following BLAST results are available for this feature:
BLAST of Phvul.007G224900.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.007G224900.1_Pv_G19833_v2.1 >Phvul.007G224900.1_Pv_G19833_v2.1 ID=Phvul.007G224900.1_Pv_G19833_v2.1; Name=Phvul.007G224900.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=165bpback to top mRNA from alignment at Chr07:34851152..34853055- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.007G224900.1_Pv_G19833_v2.1 ID=Phvul.007G224900.1_Pv_G19833_v2.1; Name=Phvul.007G224900.1; organism=Phaseolus vulgaris; type=mRNA; length=1904bp; location=Sequence derived from: Chr07:34851152..34853055- (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr07:34851152..34853055- >Phvul.007G224900.1_Pv_G19833_v2.1 ID=Phvul.007G224900.1_Pv_G19833_v2.1; Name=Phvul.007G224900.1; organism=Phaseolus vulgaris; type=CDS; length=495bp; location=Sequence derived from: Chr07:34851152..34853055- (Phaseolus vulgarisback to top |