Phvul.009G078100.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.009G078100.1 vs. DB:Swiss
Match: GRC10_ARATH (Glutaredoxin-C10 OS=Arabidopsis thaliana OX=3702 GN=GRXC10 PE=2 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 2.615e-40 Identity = 68/96 (70.83%), Postives = 79/96 (82.29%), Query Frame = 1 Query: 85 TETRIQRLISEHPVIIFTR-SSCCMCHVMKKLLATIGVHPAVIELDDNEIXXXXXXXXXXXXXFIGGTCIGGLESLVALHVSGHLIPKLVQVGALW 369 +E++I RLISEHPVIIFTR SSCCMCHVMKKLL+T+GVHP VIE+DD EI L + FIGGTC+GG ESLVALH+SG LIP+LV+VGALW Sbjct: 54 SESKIGRLISEHPVIIFTRFSSCCMCHVMKKLLSTVGVHPTVIEIDDGEIAYLAVEAAPVL--FIGGTCVGGFESLVALHLSGQLIPRLVEVGALW 147
BLAST of Phvul.009G078100.1 vs. DB:Swiss
Match: GRXC6_ARATH (Glutaredoxin-C6 OS=Arabidopsis thaliana OX=3702 GN=GRXC6 PE=2 SV=2) HSP 1 Score: 133.265 bits (334), Expect = 7.226e-40 Identity = 71/107 (66.36%), Postives = 81/107 (75.70%), Query Frame = 1 Query: 85 TETRIQRLISEHPVIIFTRSSCCMCHVMKKLLATIGVHPAVIELDDNEIXXXXXXXXXXX-----------XXFIGGTCIGGLESLVALHVSGHLIPKLVQVGALWV 372 TE +I+RLISEHPVIIF+RSSCCMCHVMK+LLATIGV P VIELDD+E+ +LP A FIG C+GGLESLVALH+SG L+PKLVQVGALWV Sbjct: 38 TEAKIRRLISEHPVIIFSRSSCCMCHVMKRLLATIGVIPTVIELDDHEVSSLPTALQDEYSGGVSVVGPPPAVFIGRECVGGLESLVALHLSGQLVPKLVQVGALWV 144
BLAST of Phvul.009G078100.1 vs. DB:Swiss
Match: GRXC7_ORYSJ (Glutaredoxin-C7 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC7 PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 5.757e-24 Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 1 Query: 94 RIQRLISEHPVIIFTRSSCCMCHVMKKLLATIGVHPAVIELDDNEIXXXXXXXXXXX--XXFIGGTCIGGLESLVALHVSGHLIPKLVQVGAL 366 RI RL+ E PV+IF R CCMCHVM++LLA +G H VIELD+ A A A F+GG +GGL+ L+ LH+SG L+P+L +VGAL Sbjct: 44 RIGRLVRESPVVIFARRGCCMCHVMRRLLAAVGAHATVIELDEAAEEAAASAAAAAAVPALFVGGAPVGGLDGLMGLHLSGRLVPRLREVGAL 136
BLAST of Phvul.009G078100.1 vs. DB:Swiss
Match: GRXC1_ORYSJ (Glutaredoxin-C1 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC1 PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.547e-20 Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 1 Query: 94 RIQRLISEHPVIIFTRSSCCMCHVMKKLLATIGVHPAVIELDDN--------EIXXXXXXXXXXXXXFIGGTCIGGLESLVALHVSGHLIPKLVQVGALWV 372 R+ RL ++ V+IF+ SSCCMCH + +L +GV+P V+ELD++ + L + PA FIGG +G + +++LH+SG+L+P L GALWV Sbjct: 3 RVNRLAAQRAVVIFSMSSCCMCHTVTRLFCELGVNPTVVELDEDPRGKEMEKALARLLGRSPAVPAVFIGGRLVGSTDKVMSLHLSGNLVPLLRNAGALWV 103
BLAST of Phvul.009G078100.1 vs. DB:Swiss
Match: GRS13_ARATH (Monothiol glutaredoxin-S13 OS=Arabidopsis thaliana OX=3702 GN=GRXS13 PE=2 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 5.921e-20 Identity = 39/92 (42.39%), Postives = 58/92 (63.04%), Query Frame = 1 Query: 106 LISEHPVIIFTRSSCCMCHVMKKLLATIGVHPAVIEL---DDNEIXXXXXXXXXXXXXFIGGTCIGGLESLVALHVSGHLIPKLVQVGALWV 372 ++ E+ V++F R CC+ HV K+LL T GV+P V+E+ D+N + P +IGG GGLE+L+A H++G L+P L Q GALW+ Sbjct: 59 VVMENAVVVFARRGCCLGHVAKRLLLTHGVNPVVVEIGEEDNNNYDNIVSDKEKLPMMYIGGKLFGGLENLMAAHINGDLVPTLRQAGALWL 150
BLAST of Phvul.009G078100.1 vs. DB:Swiss
Match: GRXS2_ARATH (Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana OX=3702 GN=GRXS2 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.478e-19 Identity = 40/99 (40.40%), Postives = 60/99 (60.61%), Query Frame = 1 Query: 97 IQRLISEHPVIIFTRSSCCMCHVMKKLLATIGVHPAVIELDD-------NEIXXXXXXXXXXXXXFIGGTCIGGLESLVALHVSGHLIPKLVQVGALWV 372 I +++ E PV+I+++SSCCM H +K LL G +PAV ELD+ + + + P FIGG +GG +++LH++G LIP L + GALWV Sbjct: 4 ITKMVMERPVVIYSKSSCCMSHTIKTLLCDFGANPAVYELDEISRGREIEQALLRLGCSPAVPGVFIGGELVGGANEVMSLHLNGSLIPMLKRAGALWV 102
BLAST of Phvul.009G078100.1 vs. DB:Swiss
Match: GRXS2_ORYSJ (Monothiol glutaredoxin-S2 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXS2 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.133e-19 Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 1 Query: 94 RIQRLISEHPVIIFTRSSCCMCHVMKKLLATIGVHPAVIELDDNEIXXXXXXXXXXX---XXFIGGTCIGGLESLVALHVSGHLIPKLVQVGAL 366 R+ RL+ E PV++F R C M HVM++LLA +G H VIEL+ A F+GG +GGLE L+ LH+SG L+P+L +VGAL Sbjct: 30 RVGRLVRESPVVVFARRGCYMAHVMRRLLAAVGAHATVIELEGGAAEEEEAALGGGAALPALFVGGDPVGGLEGLMGLHLSGRLVPRLREVGAL 123
BLAST of Phvul.009G078100.1 vs. DB:Swiss
Match: GRXC9_ARATH (Glutaredoxin-C9 OS=Arabidopsis thaliana OX=3702 GN=GRXC9 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 8.292e-19 Identity = 42/104 (40.38%), Postives = 65/104 (62.50%), Query Frame = 1 Query: 94 RIQRLISEHPVIIFTRSSCCMCHVMKKLLATIGVHPAVIELD-----------DNEIXXXXXXXXXXXXXFIGGTCIGGLESLVALHVSGHLIPKLVQVGALWV 372 R++ ++ E+ VI+ R CCMCHV+++LL +GV+PAV+E+D +N V V PA ++GG GGL+ ++A H+SG L+P L +VGALW+ Sbjct: 34 RVRMVVEENAVIVIGRRGCCMCHVVRRLLLGLGVNPAVLEIDEEREDEVLSELENIGVQGGGGTVKLPAVYVGGRLFGGLDRVMATHISGELVPILKEVGALWL 137
BLAST of Phvul.009G078100.1 vs. DB:Swiss
Match: GRXS4_ARATH (Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana OX=3702 GN=GRXS4 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 2.483e-18 Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = 1 Query: 94 RIQRLISEHPVIIFTRSSCCMCHVMKKLLATIGVHPAVIELDD----NEIXXXXXX---XXXXXXXFIGGTCIGGLESLVALHVSGHLIPKLVQVGALWV 372 ++Q++ISE V+IF+++SCCM H +K L GV+P + ELD+ EI + P FIGG +GG +++LH++ L+P L +VGALW+ Sbjct: 3 KLQKMISEKSVVIFSKNSCCMSHTIKTLFIDFGVNPTIYELDEINRGKEIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRVGALWL 102
BLAST of Phvul.009G078100.1 vs. DB:Swiss
Match: GRXS8_ARATH (Monothiol glutaredoxin-S8 OS=Arabidopsis thaliana OX=3702 GN=GRXS8 PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 3.750e-18 Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 1 Query: 94 RIQRLISEHPVIIFTRSSCCMCHVMKKLLATIGVHPAVIELDD----NEIXXXXXX---XXXXXXXFIGGTCIGGLESLVALHVSGHLIPKLVQVGALWV 372 +IQ++ISE V+IF+ +SCCM H +K L +GV+P + ELD+ EI + P FIGG +GG +++LH++ LIP L + GALW+ Sbjct: 3 KIQKMISEKSVVIFSNNSCCMSHTIKTLFLDLGVNPTIYELDEINRGKEIEYALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLIPMLKRFGALWL 102 The following BLAST results are available for this feature:
BLAST of Phvul.009G078100.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.009G078100.1_Pv_G19833_v2.1 >Phvul.009G078100.1_Pv_G19833_v2.1 ID=Phvul.009G078100.1_Pv_G19833_v2.1; Name=Phvul.009G078100.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=125bpback to top mRNA from alignment at Chr09:13113419..13113793- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.009G078100.1_Pv_G19833_v2.1 ID=Phvul.009G078100.1_Pv_G19833_v2.1; Name=Phvul.009G078100.1; organism=Phaseolus vulgaris; type=mRNA; length=375bp; location=Sequence derived from: Chr09:13113419..13113793- (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr09:13113419..13113793- >Phvul.009G078100.1_Pv_G19833_v2.1 ID=Phvul.009G078100.1_Pv_G19833_v2.1; Name=Phvul.009G078100.1; organism=Phaseolus vulgaris; type=CDS; length=375bp; location=Sequence derived from: Chr09:13113419..13113793- (Phaseolus vulgarisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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