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Transcript Overview
| Name | Phvul.010G128400.1 |
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| Unique Name | Phvul.010G128400.1_Pv_G19833_v2.1 |
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| Type | mRNA |
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| Organism | Phaseolus vulgaris (Common bean) |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.010G128400.1 | Phvul.010G128400.1_Pv_G19833_v2.1-protein | Phaseolus vulgaris | polypeptide |
| Phvul.010G128400.1_Pv_G19833_v2.1 | Phvul.010G128400.1_Pv_G19833_v2.1 | Phaseolus vulgaris | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.010G128400.1.v2.1.five_prime_UTR.1 | Phvul.010G128400.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | five_prime_UTR |
| Phvul.010G128400.1.v2.1.five_prime_UTR.2 | Phvul.010G128400.1.v2.1.five_prime_UTR.2_Pv_G19833_v2.1 | Phaseolus vulgaris | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.010G128400.1.v2.1.CDS.1 | Phvul.010G128400.1.v2.1.CDS.1_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.010G128400.1.v2.1.three_prime_UTR.1 | Phvul.010G128400.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR012876 | Protein of unknown function DUF1677, plant | PFAM | PF07911 | DUF1677 | coord: 30..119
e-value: 4.2E-40
score: 136.0 |
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.010G128400.1_Pv_G19833_v2.1 >Phvul.010G128400.1_Pv_G19833_v2.1 ID=Phvul.010G128400.1_Pv_G19833_v2.1; Name=Phvul.010G128400.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=161bp
MSAPMIIDPVVISAPETQSAASMLVGQSEVEFAVCDCCGLTEECTPAYIE
RIRERYHGKWVCGLCAEAVKDEIVRSERLVSTEEAMAKHMNFCKKFKASG
PPPNPTVHLISAMRQILRRSLDSPRVRSTPNSPTKTITEIHGSVLTRSES
CFPTLTEGLG* back to topmRNA from alignment at Chr10:40919024..40920542+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Phvul.010G128400.1_Pv_G19833_v2.1 ID=Phvul.010G128400.1_Pv_G19833_v2.1; Name=Phvul.010G128400.1; organism=Phaseolus vulgaris; type=mRNA; length=1519bp; location=Sequence derived from: Chr10:40919024..40920542+ (Phaseolus vulgaris
ATGTTTTTTCTCTCACCTCTTTCTTTTTCTCTCTCTACAAAGTGACTTTC
TCTTTCTCTCTCTCCCAACTTCCCCACTATTCATATATAGTTTAGGAGTG
CAGATCCCGTGGAGAAGCCAAATATAATCCCTTTGTTTCCTCACATAAGA
TTTGGGTTTCTTCAAAGCTATCCTTTTTTAAAAAAAAATTAAAACTTTTG
TTTAATCTTTTGAAGGAGGTTGCAGAAAGCAAAAGGTGTTTTAAGTTTTC
TCTGAAATGGTTTTCATGTCTGAGATATTGTTCCCTGAAGAAAAAATTGA
GGAAGGTGAGTGGGAGAAAGAGAGATAAGAAGAGGAGGAGAAGAATACCT
ACCCAGCAAGCAGAACTACAGAAAAGAGAAACAAACAATTGATTTCATTC
ATTTTGATCTGCTTCTGCTGGTAATAATCATCGTCCAATTGCTTTTCTTC
GATTTGCTTGCTTATACAATTTTATCATGTTTTTTTCTGCTCAGTTTCCC
TTGTTTTGTTCAATAATTTTCCTTGATATTATTACATTCATAACAATAAA
AAGCTTTGTCATAAACTCAAAAAGGAAAAAGCTTGGTTTTGTTGGATTTT
TTTCTCTTCTTTATTGAAAACTCTTCGTTATTTGTTGAACAAAAAACCAA
TATGTTCATTGGTCTTGTGAAAGGCGCAAACCGTTTGTATTTATGTCTAT
TGAAGCATATCCTTGAATTTTTGTGTTGTGTCAAATATTAGCAAAATGAT
GTTATATTAACCTGTTTGGTGTTGATTGTTTGTTCACAGGGTGGTTGGCA
ATGTCTGCACCGATGATAATTGACCCTGTGGTGATATCGGCACCAGAAAC
TCAATCAGCAGCTAGCATGCTAGTTGGACAAAGTGAAGTTGAATTTGCTG
TGTGTGACTGTTGTGGACTAACAGAAGAGTGCACCCCAGCCTATATAGAA
AGAATCAGAGAGAGGTACCATGGAAAATGGGTTTGTGGGTTGTGTGCCGA
GGCTGTTAAGGATGAAATAGTAAGGTCTGAGAGGCTTGTTAGCACAGAAG
AAGCAATGGCAAAGCATATGAACTTCTGCAAAAAGTTCAAGGCATCAGGG
CCTCCTCCAAATCCAACAGTGCATTTGATATCAGCTATGAGACAAATTCT
TAGAAGGAGTTTGGATTCTCCTAGAGTAAGGTCCACACCGAATAGTCCAA
CTAAGACCATCACAGAAATCCATGGTTCTGTGCTTACAAGGTCAGAGAGC
TGCTTCCCTACCCTCACTGAAGGATTGGGATGAAGGAAATGCAGTGTATT
TGGTTGGATAAAAATGGAAGGAGACATCAGAAATAAGGACAGAAAAATAT
AAGCTGAAAAATTAGATGTTCAATTGTAGTTTTTTCCAGTACAGAACTTT
CAATCTGTTTGTTAGAAATTTGAACATAATTTGGTCAAGAATTTTGCTTC
ACTAATACCAGTTACCTTGTTTTCAATTCCACTTAATTGTTTGAAATAAG
AAAATTTTGTTCATAACTG back to topCoding sequence (CDS) from alignment at Chr10:40919024..40920542+ >Phvul.010G128400.1_Pv_G19833_v2.1 ID=Phvul.010G128400.1_Pv_G19833_v2.1; Name=Phvul.010G128400.1; organism=Phaseolus vulgaris; type=CDS; length=483bp; location=Sequence derived from: Chr10:40919024..40920542+ (Phaseolus vulgaris
ATGTCTGCACCGATGATAATTGACCCTGTGGTGATATCGGCACCAGAAAC
TCAATCAGCAGCTAGCATGCTAGTTGGACAAAGTGAAGTTGAATTTGCTG
TGTGTGACTGTTGTGGACTAACAGAAGAGTGCACCCCAGCCTATATAGAA
AGAATCAGAGAGAGGTACCATGGAAAATGGGTTTGTGGGTTGTGTGCCGA
GGCTGTTAAGGATGAAATAGTAAGGTCTGAGAGGCTTGTTAGCACAGAAG
AAGCAATGGCAAAGCATATGAACTTCTGCAAAAAGTTCAAGGCATCAGGG
CCTCCTCCAAATCCAACAGTGCATTTGATATCAGCTATGAGACAAATTCT
TAGAAGGAGTTTGGATTCTCCTAGAGTAAGGTCCACACCGAATAGTCCAA
CTAAGACCATCACAGAAATCCATGGTTCTGTGCTTACAAGGTCAGAGAGC
TGCTTCCCTACCCTCACTGAAGGATTGGGATGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR012876 | DUF1677_pln |
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