Transcript Overview
Name rna-TanjilR_04280
Unique Name rna-TanjilR_04280_La_Tanjil_v1.0
Type mRNA
Organism Lupinus angustifolius (blue lupin)
Sequence length 2398
Product hypothetical protein
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
rna-TanjilR_04280 rna-TanjilR_04280_La_Tanjil_v1.0-protein Lupinus angustifolius polypeptide
rna-TanjilR_04280_La_Tanjil_v1.0 rna-TanjilR_04280_La_Tanjil_v1.0 Lupinus angustifolius polypeptide
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-TanjilR_04280_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:374298..374405 rna-TanjilR_04280_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:374298..374405 Lupinus angustifolius CDS
rna-TanjilR_04280_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:372801..374181 rna-TanjilR_04280_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:372801..374181 Lupinus angustifolius CDS
rna-TanjilR_04280_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:372008..372585 rna-TanjilR_04280_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:372008..372585 Lupinus angustifolius CDS
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-TanjilR_04280_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:374298..374405 rna-TanjilR_04280_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:374298..374405 Lupinus angustifolius exon
rna-TanjilR_04280_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:372801..374181 rna-TanjilR_04280_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:372801..374181 Lupinus angustifolius exon
rna-TanjilR_04280_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:372008..372585 rna-TanjilR_04280_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:372008..372585 Lupinus angustifolius exon
Homology
BLAST of rna-TanjilR_04280 vs. DB:Swiss
Match:
TRM32_ARATH (Protein TRM32 OS=Arabidopsis thaliana OX=3702 GN=TRM32 PE=2 SV=1)
HSP 1 Score: 67.3958 bits (163), Expect = 3.317e-10
Identity = 71/165 (43.03%), Postives = 100/165 (60.61%), Query Frame = 2
Query: 1907 DSNFKYVKKILEVSGFMGNEQN-QMWHTLNQPIKPSLRKDLENEIESYGEEIASHYDHQXXXXXXXXXXXXIDQISPTYFPVPFSFNKKTRPMPKGNYLLNDVWTIVNSYLS-LRPE-LDQTLDDVISRD-LAKGSVWMNXXXXXXXXXXXXXXMIVDDLLDELV 2389
D+ F YVKK+L+VSGF+ N+ N + W++ QP+ PSL +L+ +E + D +LLF+LVNE ++E S YFP F P G L++VW V LS L E D++LDD++ RD L K WMNLQ E E++ LELE++I DD+LDEL+
Sbjct: 400 DAYFCYVKKVLKVSGFLENKDNEEKWYSEEQPLNPSLLYELD------IQEEETVNDKELLFDLVNEAIVETQNHSQIYFPKTF---------PYGKRYLDEVWGRVEWSLSGLGAENRDRSLDDIVGRDLLTKSDGWMNLQGESEWLTLELEDLIFDDVLDELL 549
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 Score = Score = Score = Score = Expect = 1.4E-33 / Score = 116.6 Sequence Coil Coil mobidb-lite mobidb-lite PF14309
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 87..114
None No IPR available COILS Coil Coil coord: 562..582
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 65..79
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 15..101
IPR025486 Domain of unknown function DUF4378 PFAM PF14309 DUF4378 coord: 529..684 e-value: 1.4E-33 score: 116.6
Sequences
The
following sequences are available for this feature:
mRNA sequence
>rna-TanjilR_04280_La_Tanjil_v1.0 ID=rna-TanjilR_04280_La_Tanjil_v1.0; Name=rna-TanjilR_04280; organism=Lupinus angustifolius; type=mRNA; length=2398bp ATGCTCATAAAGCTCTACTTTAATCTATCTGCAGATAAGAGAAAAACAGA TTTGGATAACCACACCGGAAATCAACAAAATGGAGATGCAGAAGCAAAAT CCCTCCCTGTAAGTTTAAAACTTCATGCTCAAATTTTACGGTCATGGCAA CAAACAGTTGTAGATTATCTTGTATATAACATGGATATGTAAAACATTCT AATTGAATCTAATATAAATATCAGGTCAGGAAACATGGCAAAAAGTTGAG TGCTAAAGGGAAAAGTTGCCCGAAAAATCACAAGGGACAGTGCACCAAAG AGTGTCTACATTTAGAGTCCTCAGGAGAAAACCAGGCCAATAGTGAGAGT GCACTTGATTTGGAGGAAGATGGCAAGTCAAAACAAGAAGCTTCTCTTAA CCAAACACAATTGGAATCAAACAAGCTTAAGAGAGACATTTCCGATAAAC TTGATAAGCATAGTGATAGTTTGGAGATACTTGGCATGGAGAACGATTTA GTCCTCAAGTTTCAAGGAGATTTAGATGTCGGCGGGGAAAATCTCCATCA AACTTCCAACGAGAAACATTTGACAAAATCAGAGTCATTTCCTTTAACCA GATATTCAATGATGAGAAGGATGAATACTCCTACCTTTAGACACAAGCAA ACTGAAATTTGGGCCTTCTCCAAGGGAGAAAAGTTGCTTGCCGGTGCTCA AGCACCAAAAATGTCTGCATCTAGTTTTGTAGAAGATATTTCTTATGAGA AGCAAATGAAACAAAAGCAAAACATTTATTCACGGTTTTCTCAAGGATTA AATCACAAAGGGTGGAATCAAATGGTTCTTCATAGCTTCAGAGTCATAAA GCAGAAGATAAAAAATGCTCTTTCTGAAGCAATCTACCATGTAGCTTCAC CTGAATATAGTAGTACCAATGATGAGAAAGAGGTCTCAGAAATCGTAGAT GCTGGCGTGATTCGAGAGTGCGAAAAGACTGAAAGCTCAAATGAGATTAA AACTTCTGATTATGTTTCCAACAAAGATGAAGCTGGCCTCATCCAAAGAA CATCCTCTCTAGATGGATCGCTAGACAAATATACCGAGTTGTTTGAGAAA ATCTTCAGTAAAGATGCCAATAAGTATAAATGCTTAAATTTAATAAATGA AGATAAGGTTCTCAAGAGTGGAAGTGCTTCTAATTTATCCAGAAGAAATT ACTCTCTGCCTTGTCTCGAGTCTTTAGGCTTCATCCTACATGAGGTACTT CGTGATAGGAATATAGGGCATACATTGGAAACTGATAATCGTGTTCAAAG AAAATCACTGAGTTCTTCTTTACAAACTGCCAAGTCACTTGATCGGATTG AGGAGACTGAAATCGTGGAAACAGTAGAAGGAGATGGCAGAGATGTGAAC TCTGGTCTTTTATCTGGTAAGATTGTGGACAAAATTGATGAAGGAATTGC CTGTGATCAAAGGGAGAACATACATGAGATAGCATGGGAAGATGGAAGTT TCCTCAATGAAAATGTGGAAATAAGTAAGACTATATATCCTAGCAAGGAG GTAGTAGCATCTTTCGAAGCTATCTGCGAAGACAATACGACCATCCACGC CGAAGGTAATAAATTTGTGTTAATATTATATGCATGAGATTAGCATAGTA TTTCTTTGAGATGCCATGATATCATTAAGATATATTTTCTCTGTTCATAT TGAACAACTTTCACTAGAAGAAATATTGCAGTCAATTTTCTCCTCTCTTA ATTTAAGCCTTGTGCTTTCAACCCCAACAAAGATATATAATTGGTGATTG TTTTGCCGAAATGAAACCAGGTGGAGAATTGAATCCGCGAAGCTCTGGCA TGGAAGAATCGGAGAGTGACAACCATTTCCTGCTCCATAAATCAGGTACA GAGAATGATTCCAATTTCAAATACGTGAAAAAGATTCTTGAAGTTTCTGG CTTCATGGGAAATGAGCAGAATCAAATGTGGCATACATTAAACCAGCCTA TAAAGCCTTCGTTACGTAAGGATTTGGAAAATGAAATTGAATCTTATGGA GAAGAGATTGCAAGCCACTATGATCACCAGCTTCTATTCAACTTAGTTAA TGAAGTGCTCCTTGAAATAGATCAGATATCACCAACTTACTTCCCTGTAC CCTTCTCCTTCAACAAAAAAACTCGTCCAATGCCGAAGGGGAACTATCTT CTTAATGATGTATGGACTATTGTTAACTCATACCTGAGCTTGAGACCAGA ACTAGATCAGACATTAGACGATGTTATAAGTCGCGATTTGGCTAAAGGAA GTGTATGGATGAACCTCCAACAGGAAGAGGAGTATGTTGGACTTGAACTT GAAGAGATGATTGTGGATGATTTATTAGATGAACTTGTCTTCTCATGA back to top protein sequence of rna-TanjilR_04280_La_Tanjil_v1.0
>rna-TanjilR_04280_La_Tanjil_v1.0 ID=rna-TanjilR_04280_La_Tanjil_v1.0; Name=rna-TanjilR_04280_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=688bp MLIKLYFNLSADKRKTDLDNHTGNQQNGDAEAKSLPVRKHGKKLSAKGKS CPKNHKGQCTKECLHLESSGENQANSESALDLEEDGKSKQEASLNQTQLE SNKLKRDISDKLDKHSDSLEILGMENDLVLKFQGDLDVGGENLHQTSNEK HLTKSESFPLTRYSMMRRMNTPTFRHKQTEIWAFSKGEKLLAGAQAPKMS ASSFVEDISYEKQMKQKQNIYSRFSQGLNHKGWNQMVLHSFRVIKQKIKN ALSEAIYHVASPEYSSTNDEKEVSEIVDAGVIRECEKTESSNEIKTSDYV SNKDEAGLIQRTSSLDGSLDKYTELFEKIFSKDANKYKCLNLINEDKVLK SGSASNLSRRNYSLPCLESLGFILHEVLRDRNIGHTLETDNRVQRKSLSS SLQTAKSLDRIEETEIVETVEGDGRDVNSGLLSGKIVDKIDEGIACDQRE NIHEIAWEDGSFLNENVEISKTIYPSKEVVASFEAICEDNTTIHAEGGEL NPRSSGMEESESDNHFLLHKSGTENDSNFKYVKKILEVSGFMGNEQNQMW HTLNQPIKPSLRKDLENEIESYGEEIASHYDHQLLFNLVNEVLLEIDQIS PTYFPVPFSFNKKTRPMPKGNYLLNDVWTIVNSYLSLRPELDQTLDDVIS RDLAKGSVWMNLQQEEEYVGLELEEMIVDDLLDELVFS back to top mRNA from alignment at Chr_LG03-CM007363.1:372008..374405-
Legend: polypeptide CDS exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_04280_La_Tanjil_v1.0 ID=rna-TanjilR_04280_La_Tanjil_v1.0; Name=rna-TanjilR_04280; organism=Lupinus angustifolius; type=mRNA; length=2398bp; location=Sequence derived from: Chr_LG03-CM007363.1:372008..374405- (Lupinus angustifoliusATGCTCATAAAGCTCTACTTTAATCTATCTGCAGATAAGAGAAAAACAGA
TTTGGATAACCACACCGGAAATCAACAAAATGGAGATGCAGAAGCAAAAT
CCCTCCCT GTAAGTTTAAAACTTCATGCTCAAATTTTACGGTCATGGCAA
CAAACAGTTGTAGATTATCTTGTATATAACATGGATATGTAAAACATTCT
AATTGAATCTAATATAAATATCAGGTCAGGAAACATGGCAAAAAGTTGAG
TGCTAAAGGGAAAAGTTGCCCGAAAAATCACAAGGGACAGTGCACCAAAG
AGTGTCTACATTTAGAGTCCTCAGGAGAAAACCAGGCCAATAGTGAGAGT
GCACTTGATTTGGAGGAAGATGGCAAGTCAAAACAAGAAGCTTCTCTTAA
CCAAACACAATTGGAATCAAACAAGCTTAAGAGAGACATTTCCGATAAAC
TTGATAAGCATAGTGATAGTTTGGAGATACTTGGCATGGAGAACGATTTA
GTCCTCAAGTTTCAAGGAGATTTAGATGTCGGCGGGGAAAATCTCCATCA
AACTTCCAACGAGAAACATTTGACAAAATCAGAGTCATTTCCTTTAACCA
GATATTCAATGATGAGAAGGATGAATACTCCTACCTTTAGACACAAGCAA
ACTGAAATTTGGGCCTTCTCCAAGGGAGAAAAGTTGCTTGCCGGTGCTCA
AGCACCAAAAATGTCTGCATCTAGTTTTGTAGAAGATATTTCTTATGAGA
AGCAAATGAAACAAAAGCAAAACATTTATTCACGGTTTTCTCAAGGATTA
AATCACAAAGGGTGGAATCAAATGGTTCTTCATAGCTTCAGAGTCATAAA
GCAGAAGATAAAAAATGCTCTTTCTGAAGCAATCTACCATGTAGCTTCAC
CTGAATATAGTAGTACCAATGATGAGAAAGAGGTCTCAGAAATCGTAGAT
GCTGGCGTGATTCGAGAGTGCGAAAAGACTGAAAGCTCAAATGAGATTAA
AACTTCTGATTATGTTTCCAACAAAGATGAAGCTGGCCTCATCCAAAGAA
CATCCTCTCTAGATGGATCGCTAGACAAATATACCGAGTTGTTTGAGAAA
ATCTTCAGTAAAGATGCCAATAAGTATAAATGCTTAAATTTAATAAATGA
AGATAAGGTTCTCAAGAGTGGAAGTGCTTCTAATTTATCCAGAAGAAATT
ACTCTCTGCCTTGTCTCGAGTCTTTAGGCTTCATCCTACATGAGGTACTT
CGTGATAGGAATATAGGGCATACATTGGAAACTGATAATCGTGTTCAAAG
AAAATCACTGAGTTCTTCTTTACAAACTGCCAAGTCACTTGATCGGATTG
AGGAGACTGAAATCGTGGAAACAGTAGAAGGAGATGGCAGAGATGTGAAC
TCTGGTCTTTTATCTGGTAAGATTGTGGACAAAATTGATGAAGGAATTGC
CTGTGATCAAAGGGAGAACATACATGAGATAGCATGGGAAGATGGAAGTT
TCCTCAATGAAAATGTGGAAATAAGTAAGACTATATATCCTAGCAAGGAG
GTAGTAGCATCTTTCGAAGCTATCTGCGAAGACAATACGACCATCCACGC
CGAAG GTAATAAATTTGTGTTAATATTATATGCATGAGATTAGCATAGTA
TTTCTTTGAGATGCCATGATATCATTAAGATATATTTTCTCTGTTCATAT
TGAACAACTTTCACTAGAAGAAATATTGCAGTCAATTTTCTCCTCTCTTA
ATTTAAGCCTTGTGCTTTCAACCCCAACAAAGATATATAATTGGTGATTG
TTTTGCCGAAATGAAACCAGGTGGAGAATTGAATCCGCGAAGCTCTGGCA
TGGAAGAATCGGAGAGTGACAACCATTTCCTGCTCCATAAATCAGGTACA
GAGAATGATTCCAATTTCAAATACGTGAAAAAGATTCTTGAAGTTTCTGG
CTTCATGGGAAATGAGCAGAATCAAATGTGGCATACATTAAACCAGCCTA
TAAAGCCTTCGTTACGTAAGGATTTGGAAAATGAAATTGAATCTTATGGA
GAAGAGATTGCAAGCCACTATGATCACCAGCTTCTATTCAACTTAGTTAA
TGAAGTGCTCCTTGAAATAGATCAGATATCACCAACTTACTTCCCTGTAC
CCTTCTCCTTCAACAAAAAAACTCGTCCAATGCCGAAGGGGAACTATCTT
CTTAATGATGTATGGACTATTGTTAACTCATACCTGAGCTTGAGACCAGA
ACTAGATCAGACATTAGACGATGTTATAAGTCGCGATTTGGCTAAAGGAA
GTGTATGGATGAACCTCCAACAGGAAGAGGAGTATGTTGGACTTGAACTT
GAAGAGATGATTGTGGATGATTTATTAGATGAACTTGTCTTCTCATGA back to top Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:372008..374405-
>rna-TanjilR_04280_La_Tanjil_v1.0 ID=rna-TanjilR_04280_La_Tanjil_v1.0; Name=rna-TanjilR_04280; organism=Lupinus angustifolius; type=CDS; length=2067bp; location=Sequence derived from: Chr_LG03-CM007363.1:372008..374405- (Lupinus angustifolius ATGCTCATAAAGCTCTACTTTAATCTATCTGCAGATAAGAGAAAAACAGA TTTGGATAACCACACCGGAAATCAACAAAATGGAGATGCAGAAGCAAAAT CCCTCCCTGTCAGGAAACATGGCAAAAAGTTGAGTGCTAAAGGGAAAAGT TGCCCGAAAAATCACAAGGGACAGTGCACCAAAGAGTGTCTACATTTAGA GTCCTCAGGAGAAAACCAGGCCAATAGTGAGAGTGCACTTGATTTGGAGG AAGATGGCAAGTCAAAACAAGAAGCTTCTCTTAACCAAACACAATTGGAA TCAAACAAGCTTAAGAGAGACATTTCCGATAAACTTGATAAGCATAGTGA TAGTTTGGAGATACTTGGCATGGAGAACGATTTAGTCCTCAAGTTTCAAG GAGATTTAGATGTCGGCGGGGAAAATCTCCATCAAACTTCCAACGAGAAA CATTTGACAAAATCAGAGTCATTTCCTTTAACCAGATATTCAATGATGAG AAGGATGAATACTCCTACCTTTAGACACAAGCAAACTGAAATTTGGGCCT TCTCCAAGGGAGAAAAGTTGCTTGCCGGTGCTCAAGCACCAAAAATGTCT GCATCTAGTTTTGTAGAAGATATTTCTTATGAGAAGCAAATGAAACAAAA GCAAAACATTTATTCACGGTTTTCTCAAGGATTAAATCACAAAGGGTGGA ATCAAATGGTTCTTCATAGCTTCAGAGTCATAAAGCAGAAGATAAAAAAT GCTCTTTCTGAAGCAATCTACCATGTAGCTTCACCTGAATATAGTAGTAC CAATGATGAGAAAGAGGTCTCAGAAATCGTAGATGCTGGCGTGATTCGAG AGTGCGAAAAGACTGAAAGCTCAAATGAGATTAAAACTTCTGATTATGTT TCCAACAAAGATGAAGCTGGCCTCATCCAAAGAACATCCTCTCTAGATGG ATCGCTAGACAAATATACCGAGTTGTTTGAGAAAATCTTCAGTAAAGATG CCAATAAGTATAAATGCTTAAATTTAATAAATGAAGATAAGGTTCTCAAG AGTGGAAGTGCTTCTAATTTATCCAGAAGAAATTACTCTCTGCCTTGTCT CGAGTCTTTAGGCTTCATCCTACATGAGGTACTTCGTGATAGGAATATAG GGCATACATTGGAAACTGATAATCGTGTTCAAAGAAAATCACTGAGTTCT TCTTTACAAACTGCCAAGTCACTTGATCGGATTGAGGAGACTGAAATCGT GGAAACAGTAGAAGGAGATGGCAGAGATGTGAACTCTGGTCTTTTATCTG GTAAGATTGTGGACAAAATTGATGAAGGAATTGCCTGTGATCAAAGGGAG AACATACATGAGATAGCATGGGAAGATGGAAGTTTCCTCAATGAAAATGT GGAAATAAGTAAGACTATATATCCTAGCAAGGAGGTAGTAGCATCTTTCG AAGCTATCTGCGAAGACAATACGACCATCCACGCCGAAGGTGGAGAATTG AATCCGCGAAGCTCTGGCATGGAAGAATCGGAGAGTGACAACCATTTCCT GCTCCATAAATCAGGTACAGAGAATGATTCCAATTTCAAATACGTGAAAA AGATTCTTGAAGTTTCTGGCTTCATGGGAAATGAGCAGAATCAAATGTGG CATACATTAAACCAGCCTATAAAGCCTTCGTTACGTAAGGATTTGGAAAA TGAAATTGAATCTTATGGAGAAGAGATTGCAAGCCACTATGATCACCAGC TTCTATTCAACTTAGTTAATGAAGTGCTCCTTGAAATAGATCAGATATCA CCAACTTACTTCCCTGTACCCTTCTCCTTCAACAAAAAAACTCGTCCAAT GCCGAAGGGGAACTATCTTCTTAATGATGTATGGACTATTGTTAACTCAT ACCTGAGCTTGAGACCAGAACTAGATCAGACATTAGACGATGTTATAAGT CGCGATTTGGCTAAAGGAAGTGTATGGATGAACCTCCAACAGGAAGAGGA GTATGTTGGACTTGAACTTGAAGAGATGATTGTGGATGATTTATTAGATG AACTTGTCTTCTCATGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term Definition
IPR025486 DUF4378