rna-TanjilR_04302
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_04302 vs. DB:Swiss
Match: IDD10_ARATH (Zinc finger protein JACKDAW OS=Arabidopsis thaliana OX=3702 GN=JKD PE=1 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 4.166e-59 Identity = 106/120 (88.33%), Postives = 112/120 (93.33%), Query Frame = 1 Query: 1 MATNRFVCEICKKGFQRDQNLQLHLRGHNLPWKLKQRNKQEVIKKKVYVCPEKSCVHHDPFRALGDLTGIKKHYSRKHGEXXXXXXXXXXXYAVQSDWKAHSKICGTKEYKCECGTTFSR 360
MATNRFVCEIC KGFQRDQNLQLH RGHNLPWKLKQR+KQEVIKKKVY+CP K+CVHHD RALGDLTGIKKHYSRKHGEKKWKC KCSKKYAVQSDWKAH+K CGT+EYKC+CGT FSR
Sbjct: 77 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTREYKCDCGTLFSR 196
BLAST of rna-TanjilR_04302 vs. DB:Swiss
Match: IDD9_ARATH (Zinc finger protein BALDIBIS OS=Arabidopsis thaliana OX=3702 GN=BIB PE=1 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 3.956e-57 Identity = 100/120 (83.33%), Postives = 111/120 (92.50%), Query Frame = 1 Query: 1 MATNRFVCEICKKGFQRDQNLQLHLRGHNLPWKLKQRNKQEVIKKKVYVCPEKSCVHHDPFRALGDLTGIKKHYSRKHGEXXXXXXXXXXXYAVQSDWKAHSKICGTKEYKCECGTTFSR 360
M TNRF+CE+C KGF+RDQNLQLH RGHNLPWKLKQR +E +KKKVY+CPEK+CVHHDP RALGDLTGIKKH+SRKHGEKKWKC+KCSKKYAV SDWKAHSKICGTKEY+C+CGT FSR
Sbjct: 63 MTTNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLKQRTNKEQVKKKVYICPEKTCVHHDPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVMSDWKAHSKICGTKEYRCDCGTLFSR 182
BLAST of rna-TanjilR_04302 vs. DB:Swiss
Match: IDD2_ARATH (Zinc finger protein GAI-ASSOCIATED FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=GAF1 PE=1 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 5.261e-57 Identity = 104/120 (86.67%), Postives = 112/120 (93.33%), Query Frame = 1 Query: 1 MATNRFVCEICKKGFQRDQNLQLHLRGHNLPWKLKQRNKQEVIKKKVYVCPEKSCVHHDPFRALGDLTGIKKHYSRKHGEXXXXXXXXXXXYAVQSDWKAHSKICGTKEYKCECGTTFSR 360
+ATNRFVCEIC KGFQRDQNLQLH RGHNLPWKL+Q++ +EV KKKVYVCPE SCVHHDP RALGDLTGIKKH+ RKHGEKKWKC+KCSKKYAVQSDWKAHSKICGTKEYKC+CGT FSR
Sbjct: 58 LATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQKSNKEV-KKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSR 176
BLAST of rna-TanjilR_04302 vs. DB:Swiss
Match: IDD1_ARATH (Zinc finger protein ENHYDROUS OS=Arabidopsis thaliana OX=3702 GN=ENY PE=1 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 1.119e-56 Identity = 103/120 (85.83%), Postives = 109/120 (90.83%), Query Frame = 1 Query: 1 MATNRFVCEICKKGFQRDQNLQLHLRGHNLPWKLKQRNKQEVIKKKVYVCPEKSCVHHDPFRALGDLTGIKKHYSRKHGEXXXXXXXXXXXYAVQSDWKAHSKICGTKEYKCECGTTFSR 360
MATNRFVCEIC KGFQRDQNLQLH RGHNLPWKL+QR+ +EV +KKVYVCP CVHHDP RALGDLTGIKKH+ RKHGEKKWKC KCSKKYAVQSDWKAHSKICGTKEYKC+CGT FSR
Sbjct: 56 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTKEV-RKKVYVCPVSGCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSR 174
BLAST of rna-TanjilR_04302 vs. DB:Swiss
Match: IDD11_ARATH (Protein indeterminate-domain 11 OS=Arabidopsis thaliana OX=3702 GN=IDD11 PE=2 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 3.275e-56 Identity = 104/120 (86.67%), Postives = 111/120 (92.50%), Query Frame = 1 Query: 1 MATNRFVCEICKKGFQRDQNLQLHLRGHNLPWKLKQRNKQEVIKKKVYVCPEKSCVHHDPFRALGDLTGIKKHYSRKHGEXXXXXXXXXXXYAVQSDWKAHSKICGTKEYKCECGTTFSR 360
MATNRFVCEIC KGFQRDQNLQLH RGHNLPWKLKQR+ +EVI+KKVYVCPE SCVHHDP RALGDLTGIKKH+ RKHGEKKWKC+KCSKKYAVQSD KAHSK CGTKEY+C+CGT FSR
Sbjct: 94 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIRKKVYVCPEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDCKAHSKTCGTKEYRCDCGTLFSR 213
BLAST of rna-TanjilR_04302 vs. DB:Swiss
Match: IDD7_ARATH (Protein indeterminate-domain 7 OS=Arabidopsis thaliana OX=3702 GN=IDD7 PE=2 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 1.086e-55 Identity = 99/120 (82.50%), Postives = 109/120 (90.83%), Query Frame = 1 Query: 1 MATNRFVCEICKKGFQRDQNLQLHLRGHNLPWKLKQRNKQEVIKKKVYVCPEKSCVHHDPFRALGDLTGIKKHYSRKHGEXXXXXXXXXXXYAVQSDWKAHSKICGTKEYKCECGTTFSR 360
MATNRF+CE+C KGFQRDQNLQLH RGHNLPWKLKQR+ ++V++KKVYVCPE CVHH P RALGDLTGIKKH+ RKHGEKKWKC KCSKKYAVQSDWKAH+K CGTKEYKC+CGT FSR
Sbjct: 87 MATNRFICEVCNKGFQRDQNLQLHKRGHNLPWKLKQRSNKDVVRKKVYVCPEPGCVHHHPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTKEYKCDCGTLFSR 206
BLAST of rna-TanjilR_04302 vs. DB:Swiss
Match: IDD13_ARATH (Protein indeterminate-domain 13 OS=Arabidopsis thaliana OX=3702 GN=IDD13 PE=2 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 1.054e-54 Identity = 97/120 (80.83%), Postives = 110/120 (91.67%), Query Frame = 1 Query: 1 MATNRFVCEICKKGFQRDQNLQLHLRGHNLPWKLKQRNKQEVIKKKVYVCPEKSCVHHDPFRALGDLTGIKKHYSRKHGEXXXXXXXXXXXYAVQSDWKAHSKICGTKEYKCECGTTFSR 360
MATNRF CEIC KGFQR+QNLQLH RGHNLPWKLKQ+ + +KKKVY+CPEKSCVHHDP RALGDLTGIKKH+SRKHGEKKWKC+KCSKKYAV SDWKAH+KICG++E++C+CGT FSR
Sbjct: 59 MATNRFFCEICNKGFQREQNLQLHKRGHNLPWKLKQKTNKNQVKKKVYICPEKSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVISDWKAHNKICGSREFRCDCGTLFSR 178
BLAST of rna-TanjilR_04302 vs. DB:Swiss
Match: IDD6_ARATH (Protein indeterminate-domain 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=IDD6 PE=1 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 1.764e-54 Identity = 98/120 (81.67%), Postives = 111/120 (92.50%), Query Frame = 1 Query: 1 MATNRFVCEICKKGFQRDQNLQLHLRGHNLPWKLKQRNKQEVIKKKVYVCPEKSCVHHDPFRALGDLTGIKKHYSRKHGEXXXXXXXXXXXYAVQSDWKAHSKICGTKEYKCECGTTFSR 360
MATNRF+CE+C KGFQR+QNLQLH RGHNLPWKLKQ++ +EV ++KVY+CPE SCVHHDP RALGDLTGIKKHY RKHGEKKWKC+KCSK+YAVQSDWKAHSK CGTKEY+C+CGT FSR
Sbjct: 77 MATNRFLCEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEV-RRKVYLCPEPSCVHHDPARALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTKEYRCDCGTIFSR 195
BLAST of rna-TanjilR_04302 vs. DB:Swiss
Match: IDD12_ARATH (Protein indeterminate-domain 12 OS=Arabidopsis thaliana OX=3702 GN=IDD12 PE=2 SV=2) HSP 1 Score: 192.971 bits (489), Expect = 2.659e-54 Identity = 97/120 (80.83%), Postives = 107/120 (89.17%), Query Frame = 1 Query: 1 MATNRFVCEICKKGFQRDQNLQLHLRGHNLPWKLKQRNKQEVIKKKVYVCPEKSCVHHDPFRALGDLTGIKKHYSRKHGEXXXXXXXXXXXYAVQSDWKAHSKICGTKEYKCECGTTFSR 360
+ATNRFVCEIC KGFQRDQNLQLH RGHNLPWKLKQ+N +E KKKVYVCPE +C HH P RALGDLTGIKKH+ RKHGEKKWKC KCSK YAVQSDWKAH+KICGT++Y+C+CGT FSR
Sbjct: 77 LATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQKNTKEQQKKKVYVCPETNCAHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAVQSDWKAHTKICGTRDYRCDCGTLFSR 196
BLAST of rna-TanjilR_04302 vs. DB:Swiss
Match: IDD3_ARATH (Zinc finger protein MAGPIE OS=Arabidopsis thaliana OX=3702 GN=MGP PE=1 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 5.662e-54 Identity = 99/120 (82.50%), Postives = 109/120 (90.83%), Query Frame = 1 Query: 1 MATNRFVCEICKKGFQRDQNLQLHLRGHNLPWKLKQRNKQEVIKKKVYVCPEKSCVHHDPFRALGDLTGIKKHYSRKHGEXXXXXXXXXXXYAVQSDWKAHSKICGTKEYKCECGTTFSR 360
MATNRF+CEIC KGFQRDQNLQLH RGHNLPWKLKQR +EV +K+VYVCPEKSCVHH P RALGDLTGIKKH+ RKHGEKKWKC KC+K+YAVQSDWKAHSK CGT+EY+C+CGT FSR
Sbjct: 65 MATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEV-RKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSR 183 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_04302 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_04302_La_Tanjil_v1.0 ID=rna-TanjilR_04302_La_Tanjil_v1.0; Name=rna-TanjilR_04302; organism=Lupinus angustifolius; type=mRNA; length=1783bpback to top protein sequence of rna-TanjilR_04302_La_Tanjil_v1.0 >rna-TanjilR_04302_La_Tanjil_v1.0 ID=rna-TanjilR_04302_La_Tanjil_v1.0; Name=rna-TanjilR_04302_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=409bpback to top mRNA from alignment at Chr_LG03-CM007363.1:529627..531409+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_04302_La_Tanjil_v1.0 ID=rna-TanjilR_04302_La_Tanjil_v1.0; Name=rna-TanjilR_04302; organism=Lupinus angustifolius; type=mRNA; length=1783bp; location=Sequence derived from: Chr_LG03-CM007363.1:529627..531409+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:529627..531409+ >rna-TanjilR_04302_La_Tanjil_v1.0 ID=rna-TanjilR_04302_La_Tanjil_v1.0; Name=rna-TanjilR_04302; organism=Lupinus angustifolius; type=CDS; length=1230bp; location=Sequence derived from: Chr_LG03-CM007363.1:529627..531409+ (Lupinus angustifoliusback to top |