rna-TanjilR_04308
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_04308 vs. DB:Swiss
Match: ARFP_ARATH (Auxin response factor 16 OS=Arabidopsis thaliana OX=3702 GN=ARF16 PE=1 SV=1) HSP 1 Score: 470.7 bits (1210), Expect = 3.805e-152 Identity = 239/373 (64.08%), Postives = 292/373 (78.28%), Query Frame = 1 Query: 10 SQKSLDPELWHACAGGMVQMPPLNSKVFYFPQGHAEHAHTNLDFVDSMRIPPLILCSVAAVKFFADPETDEVFARVRLVPLRNAE-VDYD-TDGDCANASE-NSEKSVSFAKTLTQSDANNGGGFSVPRYCAETMFPKLDYSAEPPVQIVIVKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGDISXXXXXXXXXXXXXS-EAPSGWSSGAGNCGIGPYGAFSVFLREDTKIXXXXXXXXXXXXXXXXXXXAKVSSESVRDAMALAATNKPFEFVYYPRASTPEFCIKASAVKVAMRIQWCSGMRFKMAFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVLLSDPLFI 1116 ++K LDP+LWHACAGGMV+MPP+NSKVFYFPQGHAE+A+ +DF ++ IPP++LC V A+K+ AD E+DEVFA++RL+PL++ E VD++ DG+ +N E NSEK+ SFAKTLTQSDANNGGGFSVPRYCAET+FP+LDY+AEPPVQ ++ KDVHG+VWKFRHIYRGTPRRHLLTTGWS+FVNQKKLVAGDS+VF+RAENGD+ +GIRRAKRG G E +GW+ G+CG +S LRED + KV++ESV +A LA + +PFE VYYPRAST EFC+KA + AMRI WCSGMRFKMAFETEDSSRISWFMGT+++V V DPIRWPNSPWRLLQV +P + Sbjct: 12 TEKGLDPQLWHACAGGMVRMPPMNSKVFYFPQGHAENAYDCVDF-GNLPIPPMVLCRVLAIKYMADAESDEVFAKLRLIPLKDDEYVDHEYGDGEDSNGFESNSEKTPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFMRAENGDLCVGIRRAKRGGIGNGPEYSAGWNPIGGSCG------YSSLLREDES------NSLRRSNCSLADRKGKVTAESVIEAATLAISGRPFEVVYYPRASTSEFCVKALDARAAMRIPWCSGMRFKMAFETEDSSRISWFMGTVSAVNVSDPIRWPNSPWRLLQVAWDEPDLL 371 HSP 2 Score: 182.956 bits (463), Expect = 7.661e-47 Identity = 132/329 (40.12%), Postives = 175/329 (53.19%), Query Frame = 3 Query: 1467 QVTWDEPDLLHNVKHISPWLVELVSNVPVIHLSXXXXXXXXXXXXXHLDFPYDVQ-FPIPMFSGNAVGTSSPLRCLSDNAPAGIQEARH---AQIGKSLSDFH-FHNNKLRLGVLPTNIQQLNFNAAGISNGNITNHDKSKESLSWLLTDGNSRKSLEKSDNVKRHQFLLFGQPILTEQQISRRACDLLSQNCSAGKDSPDENKDKEKSFSVDSQSTLSEQFSP---GKSCTTESWQMGLDTTGHCKVFMESEDVGRTLDLTSLGSYEELYRRLSNMFGIERSEMLSHVLYRDVTGAVKQIGEEPFRYHFCLVNLFTIVHNLVNGMVVI 2429 QV WDEPDLL NVK ++PWLVELVSNV I L+ F PPRK++R P H D+ + P+P F N + SSPL + DN P G+Q ARH G S SD H ++ N+ + + + N D E LT G + + KS K+ +LFG+ IL E+Q+S + D+ + K + S + +FS G C+ + TGHCKVFMES+DVGRTLDL+ LGSYEEL R+LS+MFGI++SEMLS VLYRD +GA+K G EPF TI+ + VV+ Sbjct: 362 QVAWDEPDLLQNVKRVNPWLVELVSNVHPIPLTSFSPPRKKMRLPQHPDYNNLINSIPVPSFPSNPLIRSSPLSSVLDNVPVGLQGARHNAHQYYGLSSSDLHHYYLNR-------PPPPPPPSSLQLSPSLGLRNIDTKNEKGFCFLTMGTTPCNDTKS---KKSHIVLFGKLILPEEQLSEKG----------STDTANIEKTQISSGGSNQNGVAGREFSSSDEGSPCSKKVHDASGLETGHCKVFMESDDVGRTLDLSVLGSYEELSRKLSDMFGIKKSEMLSSVLYRDASGAIKYAGNEPFSEFLKTARRLTILTEQGSESVVV 670
BLAST of rna-TanjilR_04308 vs. DB:Swiss
Match: ARFR_ORYSJ (Auxin response factor 18 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF18 PE=2 SV=1) HSP 1 Score: 456.062 bits (1172), Expect = 3.902e-146 Identity = 240/379 (63.32%), Postives = 279/379 (73.61%), Query Frame = 1 Query: 4 KESQKSLDPELWHACAGGMVQMPPLNSKVFYFPQGHAEHA--HTNLDFVDSMRIPPLILCSVAAVKFFADPETDEVFARVRLVPLRNAEVDYDTDGDCANASE-----NSEKSVSFAKTLTQSDANNGGGFSVPRYCAETMFPKLDYSAEPPVQIVIVKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGDISXXXXXXXXXXXXXSE-APSGWSSGAGNCGIGPYGAFSVFLREDTKIXXXXXXXXXXXXXXXXXXXAKVSSESVRDAMALAATNKPFEFVYYPRASTPEFCIKASAVKVAMRIQWCSGMRFKMAFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVLLSDPLFI 1116 +ES K LDP+LWHACAGGMVQMPP++SKV+YFPQGHAEHA H ++F R+P L+LC VA V+F ADP+TDEVFA++RLVP+R E Y D D + EK SFAKTLTQSDANNGGGFSVPRYCAET+FP+LDYSA+PPVQ V+ KDVHG VWKFRHIYRGTPRRHLLTTGWS+FVNQKKLVAGDS+VF+R ENGD+ +GIRRAK+G GG E P G YG FS+FLR D + A+V E V +A LA + +PFE VYYPRASTPEFC+KA AV+ AMR QW +GMRFKMAFETEDSSRISWFMGT+++VQV DPIRWPNSPWRLLQV +P + Sbjct: 14 RESDKCLDPQLWHACAGGMVQMPPVSSKVYYFPQGHAEHAQGHGPVEFPGG-RVPALVLCRVAGVRFMADPDTDEVFAKIRLVPVRANEQGYAGDADDGIGAAAAAAAQEEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFMRTENGDLCVGIRRAKKGGVGGPEFLPPPPPPPPTPAAGGNYGGFSMFLRGDDD-------GNKMAAAARGKVRARVRPEEVVEAANLAVSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWFAGMRFKMAFETEDSSRISWFMGTVSAVQVADPIRWPNSPWRLLQVSWDEPDLL 384 HSP 2 Score: 246.128 bits (627), Expect = 2.832e-68 Identity = 148/307 (48.21%), Postives = 197/307 (64.17%), Query Frame = 3 Query: 1467 QVTWDEPDLLHNVKHISPWLVELVSNVPVIHLSXXXXXXXXXXXXXHLDFPYDVQFPIPMFSGNAVGTS-SPLRCLSDNAPAGIQEARHAQIGKSLSDFHFHNNKLRLGVLPTNIQQLNFNA-AGISNGNITNHDKSKESLSWLLTDGNSRKSLEKSDNVKR-HQFLLFGQPILTEQQIS---RRACDLLSQNCSAGKDSPDENKDKEKSFSVDSQSTLSEQFSPGKSCTTES---WQMGLDTTGHCKVFMESEDVGRTLDLTSLGSYEELYRRLSNMFGIERSEMLSHVLYRDVTGAVKQIGEEPF 2360 QV+WDEPDLL NVK +SPWLVELVSN+P IHL+PF PPRK+L P + + P D QFP PMF GN + P+ D PAGIQ ARHAQ G SLSD H NKL+ + P + QL+ I+ G I H +++ +S LLT G+ + + +KSD K Q +LFG+PILTEQQIS + D+ + ++ + + S +Q+ ++ S G + +GL+T GHCKVFM+SEDVGRTLDL+ +GSYEELYRRL++MFGIE++E++SHV YRD GA+K G+EPF Sbjct: 375 QVSWDEPDLLQNVKRVSPWLVELVSNMPAIHLAPFSPPRKKLCVPLYPELPIDGQFPTPMFHGNPLARGVGPMCYFPDGTPAGIQGARHAQFGISLSDLHL--NKLQSSLSPHGLHQLDHGMQPRIAAGLIIGHPAARDDISCLLTIGSPQNN-KKSDGKKAPAQLMLFGKPILTEQQISLGDAASVDVKKSSSDGNAENTVNKSNSDVSSPRSNQNGTTDNLSCGGVPLCQDNKVLDVGLET-GHCKVFMQSEDVGRTLDLSVVGSYEELYRRLADMFGIEKAELMSHVFYRDAAGALKHTGDEPF 677
BLAST of rna-TanjilR_04308 vs. DB:Swiss
Match: ARFJ_ARATH (Auxin response factor 10 OS=Arabidopsis thaliana OX=3702 GN=ARF10 PE=2 SV=1) HSP 1 Score: 444.891 bits (1143), Expect = 5.871e-142 Identity = 237/377 (62.86%), Postives = 278/377 (73.74%), Query Frame = 1 Query: 7 ESQKSLDPELWHACAGGMVQMPPLNSKVFYFPQGHAEHAHTNLDFVDSMRIPPLILCSVAAVKFFADPETDEVFARVRLVPLRNAEVDYDTDG-------DCANASENSEKSVSFAKTLTQSDANNGGGFSVPRYCAETMFPKLDYSAEPPVQIVIVKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGDISXXXXXXXXXXXXXSEAPSGWSSGAGNCGIGPYGAFSVFLRED---TKIXXXXXXXXXXXXXXXXXXXAKVSSESVRDAMALAATNKPFEFVYYPRASTPEFCIKASAVKVAMRIQWCSGMRFKMAFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVLLSDP 1107 E +KSLDP+LWHACAG MVQ+P LNS VFYF QGH EHAH DF + R+PPLILC V +VKF AD ETDEVFA++ L+PL ++D + D EK SFAKTLTQSDANNGGGFSVPRYCAET+FP+LDYSAEPPVQ VI KD+HGE WKFRHIYRGTPRRHLLTTGWS+FVNQKKL+AGDS+VFLR+E+GD+ +GIRRAKR G S AG+ PY FS FLR+D T + + N + + +V E+V +A+A AA + FE VYYPRASTPEFC+KA+ V+ AMRI+WCSGMRFKMAFETEDSSRISWFMGT+++VQV DPIRWPNSPWRLLQV +P Sbjct: 2 EQEKSLDPQLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPPDF-HAPRVPPLILCRVVSVKFLADAETDEVFAKITLLPLPGNDLDLENDAVLGLTPPSSDGNGNGKEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDIHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFLRSESGDLCVGIRRAKR---------GGLGSNAGS--DNPYPGFSGFLRDDESTTTTSKLMMMKRNGNNDGNAAATGRVRVEAVAEAVARAACGQAFEVVYYPRASTPEFCVKAADVRSAMRIRWCSGMRFKMAFETEDSSRISWFMGTVSAVQVADPIRWPNSPWRLLQVAWDEP 366 HSP 2 Score: 187.193 bits (474), Expect = 3.958e-48 Identity = 135/312 (43.27%), Postives = 174/312 (55.77%), Query Frame = 3 Query: 1467 QVTWDEPDLLHNVKHISPWLVELVSNVPVIHLSXXXXXXXXXXXXXHLDFPY-DVQFPI--PMFSGNAVGTS-SPLRCLSDNAPAGIQEARHAQIGKSLSDFHFHNNKLRLGVLPTNIQQLNFNAAGISNGNITNH------DKSKESLSWLLTDGNSRKSLEKSDNV---KRHQFLLFGQPILTEQQISRRACDLLSQNCSAGKDSPDENKDKEKSFSVDSQSTLSEQFSPGKSCTTESWQMGLDTTGHCKVFMESEDVGRTLDLTSLGSYEELYRRLSNMFGI-ERSEMLSHVLYRDVTGAVKQIGEEPF 2360 QV WDEPDLL NVK +SPWLVELVSN+P IHLSPF P +K P +FP+ +FPI P F+ N G S L ++NAPAGIQ AR AQ + T +L+ A +S+ N +H ++ ++S LT GN +K +V K HQF+LFGQPILTEQQ+ R K F + E+ + T GL+T GHCKVFMESEDVGRTLDL+ +GSY+ELYR+L+ MF I ERS++L+HV+YRD G +K+IG+EPF Sbjct: 360 QVAWDEPDLLQNVKRVSPWLVELVSNMPTIHLSPFSPRKKIRIPQP-FEFPFHGTKFPIFSPGFANNGGGESMCYLSNDNNNAPAGIQGARQAQ--QLFGSPSPSLLSDLNLSSYTGNNKLHSPAMFLSSFNPRHHHYQARDSENSNNISCSLTMGNPAMVQDKKKSVGSVKTHQFVLFGQPILTEQQVMNR-----------------------KRFLEEEAEAEEEKGLVARGLTWNYSLQGLET-GHCKVFMESEDVGRTLDLSVIGSYQELYRKLAEMFHIEERSDLLTHVVYRDANGVIKRIGDEPF 644
BLAST of rna-TanjilR_04308 vs. DB:Swiss
Match: ARFV_ORYSJ (Auxin response factor 22 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF22 PE=2 SV=1) HSP 1 Score: 422.935 bits (1086), Expect = 1.170e-133 Identity = 232/398 (58.29%), Postives = 280/398 (70.35%), Query Frame = 1 Query: 7 ESQKSLDPELWHACAGGMVQMPPLNSKVFYFPQGHAEHAHTNLDF------VDSMRIPPLILCSVAAVKFFADPETDEVFARVRLVPLRNAEVDYDTD------GDCANASENS-EKSVSFAKTLTQSDANNGGGFSVPRYCAETMFPKLDYSAEPPVQIVIVKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGDISXXXXXXXXXXXXXSEAPSGWSS-GAGNCGIGPYGAFSVFLREDTKIXXXXXXXXXXXXXXXXXXXAKVSSESVRDAMALAATNKPFEFVYYPRASTPEFCIKASAVKVAMRIQWCSGMRFKMAFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVLLSDPLFI----CLVIWFLNYL 1146 E + LDP+LWHACAGGMVQMP S+V+YF QGHAEHA + +PPL+LC V V+F AD ++DEV+A++RL P+ E ++ G +A+E S EK SFAKTLTQSDANNGGGFSVPRYCAET+FPKLDY A+PPVQ V+ KDVHG VWKFRHIYRGTPRRHLLTTGWS+FVNQKKLVAGDS+VFLR +G++ +GIRRAKR GG E SGW++ G G G FS FL+E+ GGG + G KV V +A +LA++ +PFE YYPRASTP+F +KA++V+ AMRIQWCSGMRFKMAFETEDSSRISWFMGTI+SVQV DP RWPNSPWRLLQV +P + C+ W + + Sbjct: 8 EEVRCLDPQLWHACAGGMVQMPAPRSRVYYFAQGHAEHADGGGGAAAAAAELGPRALPPLVLCRVEGVQFLADRDSDEVYAKIRLAPVAPGEAEFREPDELCPLGAAGDAAEPSPEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPKLDYRADPPVQTVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRTRHGELCVGIRRAKRMACGGMECMSGWNAPGYGG------GGFSAFLKEEES-----KLMKGHGGGGYMKGKGKVRMADVVEAASLASSGQPFEVAYYPRASTPDFVVKAASVQAAMRIQWCSGMRFKMAFETEDSSRISWFMGTISSVQVADPNRWPNSPWRLLQVTWDEPDLLQNVKCVSPWLVELV 394 HSP 2 Score: 228.794 bits (582), Expect = 3.307e-62 Identity = 149/320 (46.56%), Postives = 195/320 (60.94%), Query Frame = 3 Query: 1467 QVTWDEPDLLHNVKHISPWLVELVSNVPVIHLSXXXXXXXXXXXXXHLDFPYDVQFPIPMFSGNAVGTS-SPLRCLSDNAPAGIQEARHAQIGKSLSDFHFHNNKLRLGVLPTNIQQLNFN-------AAGISNGNITNHDKSKESLSWLLTDGNSRKSLEKSDNVKRHQFLLFGQPILTEQQI-SRRACDLLSQNCSAGKDSPDENKDKEKSFSVDSQSTLSEQFSPGKSCTTESWQMGLDTTGHCKVFMESEDVGRTLDLTSLGSYEELYRRLSNMFGIERSEMLSHVLYRDVTGAVKQIGEEPFRYHFCLVNLFTIV 2399 QVTWDEPDLL NVK +SPWLVELVS++P IHL PF PRK+LR PPH DFP++ P+F GN +G S SPL C D APAGIQ ARHAQ G L+D NKL LG+L + +FN + IS G + + + +++S LL+ + + + D +LFG+ I TEQQI S + + LS + G SP+ N K + S S S++ FS S E+ +GL+ GHCKVFMESEDVGRT+DL+ GSYEELY RL++MFGIE+ E+++H+ +RD G VK GE PF TI+ Sbjct: 371 QVTWDEPDLLQNVKCVSPWLVELVSSIPPIHLGPFSSPRKKLRVPPHPDFPFEGHLLNPIFHGNPLGPSNSPLCCYPDTAPAGIQGARHAQFGLPLTDHQL--NKLHLGLLHSG----SFNRLDAITPPSRISKGFVVSSAPAHDNISCLLSISTPQVAEKSDDRKTTPHIMLFGKAIFTEQQITSSGSTETLSPGVT-GNSSPNGNAHKTGNASDGSGSSICIGFS---SQGHEASDLGLEA-GHCKVFMESEDVGRTIDLSVFGSYEELYGRLADMFGIEKEEIINHLHFRDAAGVVKHPGEVPFSDFMKAARRLTII 679
BLAST of rna-TanjilR_04308 vs. DB:Swiss
Match: ARFH_ORYSJ (Auxin response factor 8 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF8 PE=2 SV=1) HSP 1 Score: 404.445 bits (1038), Expect = 7.702e-127 Identity = 221/375 (58.93%), Postives = 265/375 (70.67%), Query Frame = 1 Query: 10 SQKSLDPELWHACAGGMVQMPPLNSKVFYFPQGHAEHA-HTNLDFVDSMRIPPLILCSVAAVKFFADPETDEVFARVRLVPLRNAEVDYDTDGDCANASENSEKSVSFAKTLTQSDANNGGGFSVPRYCAETMFPKLDYSAEPPVQIVIVKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGDISXXXXXXXX-----XXXXXSEAPSGWSSGAGNCGIGPYGAFSVFLREDTKIXXXXXXXXXXXXXXXXXXXAKVSSESVRDAMALAATNKPFEFVYYPRASTPEFCIKASAVKVAMRIQWCSGMRFKMAFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVLLSDPLFI 1116 +++ +D +LW ACAGGM +PP+ + V+YFPQGHAEHA + + R+P L+ C VA+V++ ADP+TDEVFAR+RLVPLR AE D D + D A A E EK SFAKTLTQSDANNGGGFSVPRYCAET+FP+LDY+A+PPVQ V+ KDVHG W FRHIYRGTPRRHLLTTGWS+FVNQKKLVAGDS+VFLR + GD+ +GIRRAKR G G + GW G +R + G KV +E + +A LA +PFE VYYPRASTPEFC++A+AV+ AMR+QWC GMRFKMAFETEDSSRISWFMGT+ASVQV DPIRWP SPWRLLQV +P + Sbjct: 14 AERCVDRQLWLACAGGMCTVPPVGAAVYYFPQGHAEHALGLAAPELSAARVPALVPCRVASVRYMADPDTDEVFARIRLVPLRAAE-DGDVEEDGAAAGEEHEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPVQTVVAKDVHGVAWNFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRGDGGDLHVGIRRAKRGFCGGGGGAEEASLPGWDQYGG------------LMRGNAS------------PCAAAKGRGKVRAEDLVEAARLANGGQPFEVVYYPRASTPEFCVRAAAVRAAMRVQWCPGMRFKMAFETEDSSRISWFMGTVASVQVADPIRWPQSPWRLLQVTWDEPDLL 363 HSP 2 Score: 179.104 bits (453), Expect = 1.595e-45 Identity = 132/338 (39.05%), Postives = 176/338 (52.07%), Query Frame = 3 Query: 1467 QVTWDEPDLLHNVKHISPWLVELVSNVPVIHLSXXXXXXXXXXXXXHLDFPYDVQFPIPMFSGNAVGTSS-----------PLRCLSDNAPAGIQEARHAQIGKSLSDFHF---HNNKLRLGVL-PTNIQQLNFNAAGISNGNITNHDKSKESLSWLLTDGNSRKSLEKSDNVKRHQFLLFGQPILTEQQISRRACDLLSQNCSAGKDSPDENKDKEKSFSVDSQSTLSEQFSPGKSCTTESWQ----------MGLDTTGHCKVFMESEDVGRTLDLTSLGSYEELYRRLSNMFGIERSEMLSHVLYRDVTGAVKQIGEEPFRYHFCLVNLFTIVHN 2405 QVTWDEPDLL NVK +SPWLVELVS++P I+LS F PPRK+ R + +FP++ Q P F N + P +S APAGIQ ARHAQ G SLSD H ++ + G+ P ++ + IS +LS +K D+ K +LFGQ ILTE+Q+S L A + N + EK S S S + Q SP + ++E Q +GL+ G CKVF+ES+ VGR LDL+SL S+E+LY RLS MF I+ +E+ S VLYR TG V+ G+EPF L TI+ + Sbjct: 354 QVTWDEPDLLQNVKRVSPWLVELVSSMPAINLSSFSPPRKKPRILAYPEFPFEGQLLNPAFPPNPLAHGHHHYHHNHPSFFPFPDVS--APAGIQGARHAQFGPSLSDLHLTHLQSSLMYPGLRRPDHVGPTSIPPPRISTDLTMGSSPPARALS---------MGAKKPDDAKPPGLMLFGQRILTERQMS-----LSGTTSPAATGNSSLNWNTEKGASEGSGSGVI-QNSPTDNTSSERLQWFRENSTVSELGLEP-GQCKVFIESDTVGRNLDLSSLASFEQLYGRLSEMFCIDSAELRSRVLYRGATGEVRHAGDEPFSEFIKLARRLTILTD 673
BLAST of rna-TanjilR_04308 vs. DB:Swiss
Match: ARFJ_ORYSJ (Auxin response factor 10 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF10 PE=2 SV=3) HSP 1 Score: 391.734 bits (1005), Expect = 1.046e-121 Identity = 201/375 (53.60%), Postives = 248/375 (66.13%), Query Frame = 1 Query: 19 SLDPELWHACAGGMVQMPPLNSKVFYFPQGHAEHAHTNLDFVDSMRIPPLILCSVAAVKFFADPETDEVFARVRLVPLRNAEVDYDTDGDCANAS-----ENSEKSVSFAKTLTQSDANNGGGFSVPRYCAETMFPKLDYSAEPPVQIVIVKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGDISXXXXXXXXXXXXXSEAPSGWSSGAGN----CGIGPYGAFSVFLREDTKIXXXXXXXXXXXXXXXXXXXAKVSSESVRDAMALAATNKPFEFVYYPRASTPEFCIKASAVKVAMRIQWCSGMRFKMAFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVLLSDPLFI 1116 S+D +LW ACAG M +PP+ + V+YFPQGHAE A +D + S R+PPL+ C V AV+F AD E+DEVFA++RLVPLR + D A + + + SFAKTLTQSDANNGGGFSVPR+CAET+FP+LDYS+EPPVQ V KDVHG W FRHIYRGTPRRHLLTTGWS FVN+K+L AGDS+VF+R E G+I G A G+ S G+ I + + +R + ++ G KV E+V A A T +PFE +YYPRASTPEFC++A+AV+ AM +QWC GMRFKMAFETEDSSRISWFMGT+A VQ DP+RWP SPWRLLQV +P + Sbjct: 18 SVDSQLWAACAGSMSSVPPVGAAVYYFPQGHAEQASAAVD-LSSARVPPLVPCRVVAVRFMADAESDEVFAKIRLVPLRPGDAVVDVGEAAAAEARREEENSRPRPTSFAKTLTQSDANNGGGFSVPRFCAETIFPELDYSSEPPVQSVCAKDVHGVEWTFRHIYRGTPRRHLLTTGWSPFVNKKQLTAGDSIVFMRDEGGNIH----------VGLRRAKRGFCSIGGDDESLSSIPGWDQYRGLMRRNA---------TATATGGRTPPKGKVPPENVLTAATRATTGQPFEVLYYPRASTPEFCVRAAAVRTAMAVQWCPGMRFKMAFETEDSSRISWFMGTVAGVQASDPVRWPQSPWRLLQVTWDEPELL 372 HSP 2 Score: 160.229 bits (404), Expect = 2.745e-39 Identity = 125/328 (38.11%), Postives = 167/328 (50.91%), Query Frame = 3 Query: 1467 QVTWDEPDLLHNVKHISPWLVELVSNVPVIHLSXXXXXXXXXXXXXHLDFPYDVQ-FPIPMFSGNAVGTSS------PLRCLSDNA--PAGIQEARHAQIGKSLSDFHFHN--------NKLRLGVLPTNIQQLNFNAAGISNGNITNHDKSKESLSWLLTDGNSRKSLEKSDNVKRHQFLLFGQPILTEQQISRRACDLLSQNCSAGKDSPDENKDKEKSFSVDSQSTLSEQFSPGKSCTTESWQM----GLDTT---------GHCKVFMESEDVGRTLDLTSLGSYEELYRRLSNMFGIERSEMLSHVLYRDVTGAVKQIGEEPF 2360 QVTWDEP+LL NVK + PWLVELVS++P +HL F PPRK+ R PP+ + P + Q F P+F N + P D++ PAGIQ ARHAQ +FH N +RL IS + + + G +K D+ K FLLFGQ ILTE+QI + N SP+ + +K + S S S ++ Q SP K+ TT SW + G + + G CKVF+ESE VGR+LDL++L S+EELY LS+MF I E+ SH++YR G VK G+EPF Sbjct: 363 QVTWDEPELLQNVKRVCPWLVELVSSMPNLHLPSFSPPRKKPRNPPYAELPLEGQIFTGPVFPPNPMAHDHHHHHGFPFLPFPDSSAQPAGIQGARHAQFASPFPEFHIGNLQPNLMLYAGIRLPPADRAAPAPRPPRIIISTDLTIGSPGKPDDAACSPSSGG-----KKIDDTKPRGFLLFGQAILTEEQIK-------NGNSDGRPASPNWDAEKAPNTSEGSDSGVT-QGSPTKN-TTPSWSLPYFGGNNISRASEYELNPGQCKVFVESETVGRSLDLSALSSFEELYACLSDMFSIGSDELRSHLVYRSPAGEVKHAGDEPF 676
BLAST of rna-TanjilR_04308 vs. DB:Swiss
Match: ARFJ_ORYSI (Auxin response factor 10 OS=Oryza sativa subsp. indica OX=39946 GN=ARF10 PE=3 SV=2) HSP 1 Score: 391.734 bits (1005), Expect = 1.046e-121 Identity = 201/375 (53.60%), Postives = 248/375 (66.13%), Query Frame = 1 Query: 19 SLDPELWHACAGGMVQMPPLNSKVFYFPQGHAEHAHTNLDFVDSMRIPPLILCSVAAVKFFADPETDEVFARVRLVPLRNAEVDYDTDGDCANAS-----ENSEKSVSFAKTLTQSDANNGGGFSVPRYCAETMFPKLDYSAEPPVQIVIVKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGDISXXXXXXXXXXXXXSEAPSGWSSGAGN----CGIGPYGAFSVFLREDTKIXXXXXXXXXXXXXXXXXXXAKVSSESVRDAMALAATNKPFEFVYYPRASTPEFCIKASAVKVAMRIQWCSGMRFKMAFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVLLSDPLFI 1116 S+D +LW ACAG M +PP+ + V+YFPQGHAE A +D + S R+PPL+ C V AV+F AD E+DEVFA++RLVPLR + D A + + + SFAKTLTQSDANNGGGFSVPR+CAET+FP+LDYS+EPPVQ V KDVHG W FRHIYRGTPRRHLLTTGWS FVN+K+L AGDS+VF+R E G+I G A G+ S G+ I + + +R + ++ G KV E+V A A T +PFE +YYPRASTPEFC++A+AV+ AM +QWC GMRFKMAFETEDSSRISWFMGT+A VQ DP+RWP SPWRLLQV +P + Sbjct: 18 SVDSQLWAACAGSMSSVPPVGAAVYYFPQGHAEQASAAVD-LSSARVPPLVPCRVVAVRFMADAESDEVFAKIRLVPLRPGDAVVDVGEAAAAEARREEENSRPRPTSFAKTLTQSDANNGGGFSVPRFCAETIFPELDYSSEPPVQSVCAKDVHGVEWTFRHIYRGTPRRHLLTTGWSPFVNKKQLTAGDSIVFMRDEGGNIH----------VGLRRAKRGFCSIGGDDESLSSIPGWDQYRGLMRRNA---------TATATGGRTPPKGKVPPENVLTAATRATTGQPFEVLYYPRASTPEFCVRAAAVRTAMAVQWCPGMRFKMAFETEDSSRISWFMGTVAGVQASDPVRWPQSPWRLLQVTWDEPELL 372 HSP 2 Score: 160.229 bits (404), Expect = 2.745e-39 Identity = 125/328 (38.11%), Postives = 167/328 (50.91%), Query Frame = 3 Query: 1467 QVTWDEPDLLHNVKHISPWLVELVSNVPVIHLSXXXXXXXXXXXXXHLDFPYDVQ-FPIPMFSGNAVGTSS------PLRCLSDNA--PAGIQEARHAQIGKSLSDFHFHN--------NKLRLGVLPTNIQQLNFNAAGISNGNITNHDKSKESLSWLLTDGNSRKSLEKSDNVKRHQFLLFGQPILTEQQISRRACDLLSQNCSAGKDSPDENKDKEKSFSVDSQSTLSEQFSPGKSCTTESWQM----GLDTT---------GHCKVFMESEDVGRTLDLTSLGSYEELYRRLSNMFGIERSEMLSHVLYRDVTGAVKQIGEEPF 2360 QVTWDEP+LL NVK + PWLVELVS++P +HL F PPRK+ R PP+ + P + Q F P+F N + P D++ PAGIQ ARHAQ +FH N +RL IS + + + G +K D+ K FLLFGQ ILTE+QI + N SP+ + +K + S S S ++ Q SP K+ TT SW + G + + G CKVF+ESE VGR+LDL++L S+EELY LS+MF I E+ SH++YR G VK G+EPF Sbjct: 363 QVTWDEPELLQNVKRVCPWLVELVSSMPNLHLPSFSPPRKKPRNPPYAELPLEGQIFTGPVFPPNPMAHDHHHHHGFPFLPFPDSSAQPAGIQGARHAQFASPFPEFHIGNLQPNLMLYAGIRLPPADRAAPAPRPPRIIISTDLTIGSPGKPDDAACSPSSGG-----KKIDDTKPRGFLLFGQAILTEEQIK-------NGNSDGRPASPNWDAEKAPNTSEGSDSGVT-QGSPTKN-TTPSWSLPYFGGNNISRASEYELNPGQCKVFVESETVGRSLDLSALSSFEELYACLSDMFSIGSDELRSHLVYRSPAGEVKHAGDEPF 676
BLAST of rna-TanjilR_04308 vs. DB:Swiss
Match: ARFQ_ARATH (Auxin response factor 17 OS=Arabidopsis thaliana OX=3702 GN=ARF17 PE=2 SV=1) HSP 1 Score: 287.73 bits (735), Expect = 3.127e-84 Identity = 165/373 (44.24%), Postives = 224/373 (60.05%), Query Frame = 1 Query: 10 SQKSLDPELWHACAGGMVQMPPLNSKVFYFPQGHAEHAHTNLDFVDSMRIPPLILCSVAAVKFFADPETDEVFARVRLVPLRNAE---VDYDTDGDCANASENSEKSVSFAKTLTQSDANNGGGFSVPRYCAETMFPKLDYSAEPPVQIVIVKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGDISXXXXXXXXXXXXXSEAPSGWSSGAGNCGIGPYGAFSVFLREDTKIXXXXXXXXXXXXXXXXXXXAKVSSESVRDAMALAATNKPFEFVYYPRASTPEFCIKASAVKVAMRIQWCSGMRFKMAFETEDSSRISWFMGTIASV-QVVDPIRWPNSPWRLLQVLLSDPLFI 1116 + + +DP +W ACAG VQ+P L+S+V+YFPQGH EH L + S P + C + +++ ADP TDEVFA + L P+ + +Y G +++ K +FAK LT SDANNGGGFSVPR+CA+++FP L++ +PPVQ + V D+HG VW FRHIYRGTPRRHLLTTGWS FVN KKL+AGDSVVF+R ++ IG+RR G + G G Y + S +ED SP SG+ K+++E+V DA+ A+ PFE V+YP A EF ++A V+ +M + W G R KMA ETEDSSRI+WF G ++S Q P W SPW+ LQ+ +P + Sbjct: 12 NHREVDPTIWRACAGASVQIPVLHSRVYYFPQGHVEHCCPLLSTLPSSTSP--VPCIITSIQLLADPVTDEVFAHLILQPMTQQQFTPTNYSRFGRFDGDVDDNNKVTTFAKILTPSDANNGGGFSVPRFCADSVFPLLNFQIDPPVQKLYVTDIHGAVWDFRHIYRGTPRRHLLTTGWSKFVNSKKLIAGDSVVFMRKSADEMFIGVRRTPISSSDGGSSYYGGDEYNG------YYSQSSVAKEDDG---------SPKKTFRRSGNGKLTAEAVTDAINRASQGLPFEVVFYPAAGWSEFVVRAEDVESSMSMYWTPGTRVKMAMETEDSSRITWFQGIVSSTYQETGP--WRGSPWKQLQITWDEPEIL 365
BLAST of rna-TanjilR_04308 vs. DB:Swiss
Match: ARFC_ARATH (Auxin response factor 3 OS=Arabidopsis thaliana OX=3702 GN=ARF3 PE=1 SV=2) HSP 1 Score: 224.172 bits (570), Expect = 2.213e-61 Identity = 139/367 (37.87%), Postives = 189/367 (51.50%), Query Frame = 1 Query: 31 ELWHACAGGMVQMPPLNSKVFYFPQGHAEHAHTNLDFVDSMR-IPPLILCSVAAVKFFADPETDEVFARVRLVP--------LRNAEVDYDTDGDCANASENSEKSVSFAKTLTQSDANNGGGFSVPRYCAETMFPKLDYSAEPPVQIVIVKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGDISXXXXXXXXXXXXXSEAPSGWSSGAGNCGIGPYGAFSVFLREDTKIXXXXXXXXXXXXXXXXXXXAKVSSESVRDAMALAATNKPFEFVYYPRASTPEFCIKASAVKVAMRIQWCSGMRFKMAFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVLLSD 1104 ELWHACAG ++ +P S V YFPQGH E A DF ++ +PP + C + VK A+ TDEV+A+V L+P +R +D D + + S F KTLT SD + GGFSVPR AE FP LDYS P Q ++ +D+HG W+FRHIYRG PRRHLLTTGWS+FVN+KKLV+GD+V+FLR ++ G + +R ++I G ++ +N + ++V A A++ T+ F Y P+AS F I A + +C GMRFK E+ED+S G I+ + +DPIRWP S WR L V D Sbjct: 54 ELWHACAGPLISLPKRGSLVLYFPQGHLEQA---PDFSAAIYGLPPHVFCRILDVKLHAETTTDEVYAQVSLLPESEDIERKVREGIIDVDGGEEDYEVLKRSNTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQPRPSQELLARDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDD------------------------------------GKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEV-------AHAIS-THSVFSISYNPKASWSNFIIPAPKFLKVVDYPFCIGMRFKARVESEDASE-RRSPGIISGISDLDPIRWPGSKWRCLLVRWDD 372
BLAST of rna-TanjilR_04308 vs. DB:Swiss
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica OX=39946 GN=ARF23 PE=2 SV=1) HSP 1 Score: 212.231 bits (539), Expect = 9.949e-56 Identity = 135/368 (36.68%), Postives = 186/368 (50.54%), Query Frame = 1 Query: 31 ELWHACAGGMVQMPPLNSKVFYFPQGHAEHAHTNLDFVDSMR-----IPPLILCSVAAVKFFADPETDEVFARVRLVP-LRNAEVDYDTDGDCANASENSE---KSVSFAKTLTQSDANNGGGFSVPRYCAETMFPKLDYSAEPPVQIVIVKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGDISXXXXXXXXXXXXXSEAPSGWSSGAGNCGIGPYGAFSVFLREDTKIXXXXXXXXXXXXXXXXXXXAKVSSESVRDAM---ALAATNKPFEFVYY--PRASTPEFCIKASAVKVAMRIQWCSGMRFKMAFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQV 1092 ELW ACAG +V +P + KVFYFPQGH E + + V R +P ILC V V+ A+P+TDEV+A++ L+P L+ E + T+ + +A + SF KTLT SD + GGFSV R A+ P LD S +PP Q ++ KD+HG W+FRHI+RG PRRHLL +GWS FV+ K+LVAGD+ +FLR ENG++ +G A +R+ T + + +SS S+ + A A N F Y PR S EF + +++ + GMRFKM FE E++ F GTI + DP WP S WR L+V Sbjct: 41 ELWSACAGPLVTVPRVGEKVFYFPQGHIEQVEASTNQVGEQRMQLYNLPWKILCEVMNVELKAEPDTDEVYAQLTLLPELKQQEDNGSTEEEVPSAPAAGHVRPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFLRGENGELR----------------------------VGVRRA----MRQQTNVPSSV-----------------ISSHSMHLGVLATAWHAVNTGTMFTVYYKPRTSPAEFVVPYDRYMESLKRNYSIGMRFKMRFEGEEAPE-QRFTGTIVGMGDSDPAGWPESKWRSLKV 358 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_04308 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_04308_La_Tanjil_v1.0 ID=rna-TanjilR_04308_La_Tanjil_v1.0; Name=rna-TanjilR_04308; organism=Lupinus angustifolius; type=mRNA; length=3091bpback to top protein sequence of rna-TanjilR_04308_La_Tanjil_v1.0 >rna-TanjilR_04308_La_Tanjil_v1.0 ID=rna-TanjilR_04308_La_Tanjil_v1.0; Name=rna-TanjilR_04308_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=709bpback to top mRNA from alignment at Chr_LG03-CM007363.1:570250..573340- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_04308_La_Tanjil_v1.0 ID=rna-TanjilR_04308_La_Tanjil_v1.0; Name=rna-TanjilR_04308; organism=Lupinus angustifolius; type=mRNA; length=3091bp; location=Sequence derived from: Chr_LG03-CM007363.1:570250..573340- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:570250..573340- >rna-TanjilR_04308_La_Tanjil_v1.0 ID=rna-TanjilR_04308_La_Tanjil_v1.0; Name=rna-TanjilR_04308; organism=Lupinus angustifolius; type=CDS; length=2130bp; location=Sequence derived from: Chr_LG03-CM007363.1:570250..573340- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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