rna-TanjilR_04315
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_04315 vs. DB:Swiss
Match: AB3G_ARATH (ABC transporter G family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCG3 PE=1 SV=2) HSP 1 Score: 207.608 bits (527), Expect = 2.491e-54 Identity = 119/197 (60.41%), Postives = 133/197 (67.51%), Query Frame = 1
Query: 88 FFYLRKPGSLRQPISFEDSPEWEXXXXXXXXXXXXX----SIHVATT-PASPSLSKLNSGSLPSPHLPEGAV---IPRKIAGASVAWRDLTVTIKGKRKYSDKVIKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGPEASFLCLFIKHFTIFPCIF**TNLNRSFLFTSGRLHPSARVYGEVFVNGRTSHMAYGSY 654
FFY+RKPGSLRQPISFEDSPEWEDT + SI+ ATT P SPSLSK+NSGS+ SP +PEG + RKIAGAS+AW+DLTVT+KGKRKYSDKV+KSSNGYA PGTMTVIMGPAKSGKSTLLRA+A GRL PSA++YGEVFVNG SHM YGSY
Sbjct: 30 FFYVRKPGSLRQPISFEDSPEWEDTPDVDLRMEDEAGGGDSINDATTTPVSPSLSKMNSGSMASPPVPEGGAGTGVVRKIAGASIAWKDLTVTMKGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALA----------------------------------GRLPPSAKMYGEVFVNGSKSHMPYGSY 192 HSP 2 Score: 127.102 bits (318), Expect = 9.494e-49 Identity = 93/199 (46.73%), Postives = 112/199 (56.28%), Query Frame = 1
Query: 3697 SFTLILKNVNEIKLFAIFQVYACEESNQHSSTLVFLLAQXXXXXXXXXXXXXXXXXXXXXXVGLEDQFSLLMYFVLNFFMTLLVNEGIMLVVTTLWQDVFCSVMTLLCIHVSPIIHLFSMSNFN*SYMLLHLLYPMFLHNGYDCIKNSVNA*TNYRCVYMSFQVVMMLSAGYFRIRNALPGPVWMYPMSYIAFHTYSIQ 4293
SF +L L ++Y E SNQHS VFLL QFL SIPFLFL+SISSSLVFYF+VGL D FSLLMYFVLNFFM LLVNEG+ML + +W+DV+ S +TL+ +HV +MML+AG+FRIR ALP PVW YP +YI+FHTYSI+
Sbjct: 501 SFASLLGIAGIPSLLKEIKIYRSEASNQHSGAFVFLLGQFLGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFFMCLLVNEGLMLFIACIWRDVYWSTLTLISVHV-----------------------------------------------------IMMLAAGHFRIRTALPKPVWTYPFAYISFHTYSIE 646 HSP 3 Score: 91.6633 bits (226), Expect = 9.494e-49 Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 2
Query: 4367 GLLENEYLGTLFAVGQVRTISGFQALQNVYNISLDNTSKWNNLLVLFLMAVGYRIFVFILLCFFIGRKVS--VLKSFKCN 4600
GLLENEYLG +FAVG+VR+ISG+QA+Q Y IS D +KW N+LVL MA GYR+ V++LL F + + VS +L S K N
Sbjct: 647 GLLENEYLGEVFAVGEVRSISGYQAIQGNYQISPDTNAKWRNMLVLLAMAFGYRLLVYVLLRFGLNKNVSGRLLLSHKKN 726 HSP 4 Score: 173.711 bits (439), Expect = 3.640e-43 Identity = 84/95 (88.42%), Postives = 87/95 (91.58%), Query Frame = 3
Query: 1080 GYVERETTLIGSLTVREFLYYSALLQLPGFFCQKKSVVEDAIHAMSLGDHANKLIGGHCYMKGLPSGERRLVSIARELVMRPRILFIDEPLYHLD 1364
G+VERET LIGSLTVREFLYYSALLQLPGF QK+SVVEDAI AMSL D+ANKLIGGHCYMKGL SGERR VSIARELVMRP ILFIDEPLYHLD
Sbjct: 193 GFVERETQLIGSLTVREFLYYSALLQLPGFLFQKRSVVEDAIQAMSLSDYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLD 287 HSP 5 Score: 112.079 bits (279), Expect = 1.423e-23 Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 2
Query: 1445 VIFVNILFWKYVFFY--SVSALLMMVTLKRLASTGCTLILTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 1663
V+ +ILF ++ SVSALLMMVTLK+LAS GCTL+ TIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ
Sbjct: 271 VMRPHILFIDEPLYHLDSVSALLMMVTLKKLASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 345 HSP 6 Score: 89.3521 bits (220), Expect = 1.437e-16 Identity = 37/40 (92.50%), Postives = 40/40 (100.00%), Query Frame = 2
Query: 1892 VKHFSNAGFPCPIMQSPSDHFLRAINTEFDRIIAMCKNWQ 2011
++HFSNAGFPCPIMQSPSDHFLRAINT+FDRIIAMCKNWQ
Sbjct: 344 LQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKNWQ 383 HSP 7 Score: 70.8626 bits (172), Expect = 8.659e-11 Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 2
Query: 2570 LISQEGPALKSKGKASNATRVAVLTWRSLLVVSREWKHYW 2689
L +EG LKSKGKA ATRVAVLTWRSLLV+SREWK+YW
Sbjct: 423 LTEREGTQLKSKGKAGAATRVAVLTWRSLLVMSREWKYYW 462 HSP 8 Score: 61.6178 bits (148), Expect = 6.102e-8 Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 3
Query: 2136 VNMDTAVAIRTLEATYKSSADAASVETTILKLTEK 2240
VNMDTAVAIRTLEATYKSSADA SVE I+KLTE+
Sbjct: 392 VNMDTAVAIRTLEATYKSSADADSVEAMIIKLTER 426
BLAST of rna-TanjilR_04315 vs. DB:Swiss
Match: AB11G_ARATH (ABC transporter G family member 11 OS=Arabidopsis thaliana OX=3702 GN=ABCG11 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 8.909e-16 Identity = 45/99 (45.45%), Postives = 68/99 (68.69%), Query Frame = 3
Query: 1080 GYVERETTLIGSLTVREFLYYSALLQLPGFF--CQKKSVVEDAIHAMSLGDHANKLIGGHCYMKGLPSGERRLVSIARELVMRPRILFIDEPLYHLDRC 1370
YV ++ LIG+LTVRE ++YSA ++LP +K+++VE I M L D A+ +IG + +++G+ GE+R VSIA E++MRPR+LF+DEP LD
Sbjct: 129 AYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRALVERTIIEMGLQDCADTVIG-NWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSA 226
BLAST of rna-TanjilR_04315 vs. DB:Swiss
Match: AB15G_ARATH (ABC transporter G family member 15 OS=Arabidopsis thaliana OX=3702 GN=ABCG15 PE=2 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 2.366e-13 Identity = 43/102 (42.16%), Postives = 66/102 (64.71%), Query Frame = 3
Query: 1071 NLQGYVERETTLIGSLTVREFLYYSALLQLPGFFCQKK--SVVEDAIHAMSLGDHANKLIGGHCYMKGLPSGERRLVSIARELVMRPRILFIDEPLYHLDRC 1370
L YV +E L+G+LTVRE + YSA L+LP +++ +VE I + L D ++++IG + + +G+ GER+ VSIA E++ RP+ILF+DEP LD
Sbjct: 102 GLVAYVTQEDVLLGTLTVRETITYSAHLRLPSDMSKEEVSDIVEGTIMELGLQDCSDRVIG-NWHARGVSGGERKRVSIALEILTRPQILFLDEPTSGLDSA 202
BLAST of rna-TanjilR_04315 vs. DB:Swiss
Match: AB12G_ARATH (ABC transporter G family member 12 OS=Arabidopsis thaliana OX=3702 GN=ABCG12 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.901e-12 Identity = 42/102 (41.18%), Postives = 65/102 (63.73%), Query Frame = 3
Query: 1071 NLQGYVERETTLIGSLTVREFLYYSALLQLPGFFCQKK--SVVEDAIHAMSLGDHANKLIGGHCYMKGLPSGERRLVSIARELVMRPRILFIDEPLYHLDRC 1370
L YV +E L+G+LTVRE + YSA L+L +++ +VE I + L D A+++IG + + +G+ GER+ VS+A E++ RP+ILF+DEP LD
Sbjct: 101 GLVAYVTQEDILMGTLTVRETITYSAHLRLSSDLTKEEVNDIVEGTIIELGLQDCADRVIG-NWHSRGVSGGERKRVSVALEILTRPQILFLDEPTSGLDSA 201
BLAST of rna-TanjilR_04315 vs. DB:Swiss
Match: ABCG5_RAT (ATP-binding cassette sub-family G member 5 OS=Rattus norvegicus OX=10116 GN=Abcg5 PE=1 SV=3) HSP 1 Score: 63.5438 bits (153), Expect = 5.105e-12 Identity = 44/114 (38.60%), Postives = 65/114 (57.02%), Query Frame = 3
Query: 1065 FLNLQGYVERETTLIGSLTVREFLYYSALLQL---PGFFCQKKSVVEDAIHAMSLGDHANKLIGGHCYMKGLPSGERRLVSIARELVMRPRILFIDEPLYHLDRCLF*NFQFLL 1397
F + Y+ + + SLTVRE L Y+A+L L F KK VE + +SL A+++IG + + G+ SGERR VSIA +L+ P+++ +DEP LD C+ N LL
Sbjct: 126 FQDCVSYLLQSDVFLSSLTVRETLRYTAMLALRSSSADFYDKK--VEAVLTELSLSHVADQMIGNYNF-GGISSGERRRVSIAAQLLQDPKVMMLDEPTTGLD-CMTANHIVLL 235 HSP 2 Score: 31.9574 bits (71), Expect = 5.105e-12 Identity = 17/50 (34.00%), Postives = 31/50 (62.00%), Query Frame = 2
Query: 1493 VSALLMMVTLKRLASTGCTLILTIYQSSTEVFGLFDRICLLSNGNTLFFG 1642
++A +++ L LA +I+TI+Q +E+F FD+I +L+ G +F G
Sbjct: 227 MTANHIVLLLVELARRNRIVIVTIHQPRSELFHHFDKIAILTYGELVFCG 276
BLAST of rna-TanjilR_04315 vs. DB:Swiss
Match: ABCG5_HUMAN (ATP-binding cassette sub-family G member 5 OS=Homo sapiens OX=9606 GN=ABCG5 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.258e-11 Identity = 45/98 (45.92%), Postives = 63/98 (64.29%), Query Frame = 3
Query: 1083 YVERETTLIGSLTVREFLYYSALLQL----PGFFCQKKSVVEDAIHAMSLGDHANKLIGGHCYMKGLPSGERRLVSIARELVMRPRILFIDEPLYHLD 1364
YV + TL+ SLTVRE L+Y+ALL + PG F QKK VE + +SL A++LIG + + G+ +GERR VSIA +L+ P+++ DEP LD
Sbjct: 131 YVLQSDTLLSSLTVRETLHYTALLAIRRGNPGSF-QKK--VEAVMAELSLSHVADRLIGNYS-LGGISTGERRRVSIAAQLLQDPKVMLFDEPTTGLD 224
BLAST of rna-TanjilR_04315 vs. DB:Swiss
Match: WHITE_CERCA (Protein white OS=Ceratitis capitata OX=7213 GN=W PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.182e-11 Identity = 39/97 (40.21%), Postives = 56/97 (57.73%), Query Frame = 3
Query: 1080 GYVERETTLIGSLTVREFLYYSALLQLPGFFCQKKSV--VEDAIHAMSLGDHANKLIGGHCYMKGLPSGERRLVSIARELVMRPRILFIDEPLYHLD 1364
YV+++ IGSLT RE L + A++++P QK+ V V+ I +SLG N LIG +KGL GER+ ++ A E + P +L DEP LD
Sbjct: 167 AYVQQDDLFIGSLTAREHLIFQAMVRMPRHMTQKQKVQRVDQVIQDLSLGKCQNTLIGVPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLD 263
BLAST of rna-TanjilR_04315 vs. DB:Swiss
Match: AB13G_ARATH (ABC transporter G family member 13 OS=Arabidopsis thaliana OX=3702 GN=ABCG13 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.249e-11 Identity = 38/99 (38.38%), Postives = 64/99 (64.65%), Query Frame = 3
Query: 1080 GYVERETTLIGSLTVREFLYYSALLQLPGFFCQKK--SVVEDAIHAMSLGDHANKLIGGHCYMKGLPSGERRLVSIARELVMRPRILFIDEPLYHLDRC 1370
YV +E L+G+LTVRE + YSA L+LP +++ +VE I M L + +++ IG + +++G+ GE++ +SIA E++ +P +LF+DEP LD
Sbjct: 90 AYVTQEDVLLGTLTVRESISYSAHLRLPSKLTREEISDIVEATITDMGLEECSDRTIG-NWHLRGISGGEKKRLSIALEVLTKPSLLFLDEPTSGLDSA 187
BLAST of rna-TanjilR_04315 vs. DB:Swiss
Match: ABCG2_BOVIN (ATP-binding cassette sub-family G member 2 OS=Bos taurus OX=9913 GN=ABCG2 PE=3 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 8.404e-11 Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 3
Query: 1077 QGYVERETTLIGSLTVREFLYYSALLQLPGFFC--QKKSVVEDAIHAMSLGDHANKLIGGHCYMKGLPSGERRLVSIARELVMRPRILFIDEPLYHLD 1364
GYV ++ ++G+LTVRE L +SA L+LP +K + I + L A+ +G +++G+ GER+ SIA EL+ P ILF+DEP LD
Sbjct: 120 SGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTSYEKNERINKVIQELGLDKVADSKVGTQ-FIRGVSGGERKRTSIAMELITDPSILFLDEPTTGLD 216
BLAST of rna-TanjilR_04315 vs. DB:Swiss
Match: ABCG2_PIG (ATP-binding cassette sub-family G member 2 OS=Sus scrofa OX=9823 GN=ABCG2 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.192e-10 Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 3
Query: 1077 QGYVERETTLIGSLTVREFLYYSALLQLPGFFC--QKKSVVEDAIHAMSLGDHANKLIGGHCYMKGLPSGERRLVSIARELVMRPRILFIDEPLYHLD 1364
GYV ++ ++G+LTVRE L +SA L+LP +K + I + L A+ +G +++G+ GER+ SIA EL+ P ILF+DEP LD
Sbjct: 121 SGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTNHEKNERINMVIQELGLDKVADSKVGTQ-FIRGVSGGERKRTSIAMELITDPSILFLDEPTTGLD 217 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_04315 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_04315_La_Tanjil_v1.0 ID=rna-TanjilR_04315_La_Tanjil_v1.0; Name=rna-TanjilR_04315; organism=Lupinus angustifolius; type=mRNA; length=4624bpback to top protein sequence of rna-TanjilR_04315_La_Tanjil_v1.0 >rna-TanjilR_04315_La_Tanjil_v1.0 ID=rna-TanjilR_04315_La_Tanjil_v1.0; Name=rna-TanjilR_04315_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=723bpback to top mRNA from alignment at Chr_LG03-CM007363.1:635457..640080+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_04315_La_Tanjil_v1.0 ID=rna-TanjilR_04315_La_Tanjil_v1.0; Name=rna-TanjilR_04315; organism=Lupinus angustifolius; type=mRNA; length=4624bp; location=Sequence derived from: Chr_LG03-CM007363.1:635457..640080+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:635457..640080+ >rna-TanjilR_04315_La_Tanjil_v1.0 ID=rna-TanjilR_04315_La_Tanjil_v1.0; Name=rna-TanjilR_04315; organism=Lupinus angustifolius; type=CDS; length=2172bp; location=Sequence derived from: Chr_LG03-CM007363.1:635457..640080+ (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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